{"id":"https://openalex.org/W2110946298","doi":"https://doi.org/10.1093/database/bap012","title":"A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki","display_name":"A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki","publication_year":2009,"publication_date":"2009-09-17","ids":{"openalex":"https://openalex.org/W2110946298","doi":"https://doi.org/10.1093/database/bap012","mag":"2110946298","pmid":"https://pubmed.ncbi.nlm.nih.gov/20157485"},"language":"en","primary_location":{"id":"doi:10.1093/database/bap012","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap012","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap012/1020760/bap012.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap012/1020760/bap012.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029265039","display_name":"Lope A. Fl\u00f3rez","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"L. A. Florez","raw_affiliation_strings":["Department of General Microbiology, Institute for Microbiology and Genetics, Georg-August-University of G\u00f6ttingen, Grisebachstr. 8, 37077 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of General Microbiology, Institute for Microbiology and Genetics, Georg-August-University of G\u00f6ttingen, Grisebachstr. 8, 37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077161681","display_name":"Sebastian Roppel","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"S. F. Roppel","raw_affiliation_strings":["Department of General Microbiology, Institute for Microbiology and Genetics, Georg-August-University of G\u00f6ttingen, Grisebachstr. 8, 37077 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of General Microbiology, Institute for Microbiology and Genetics, Georg-August-University of G\u00f6ttingen, Grisebachstr. 8, 37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002191042","display_name":"Arne Schmeisky","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"A. G. Schmeisky","raw_affiliation_strings":["Department of General Microbiology, Institute for Microbiology and Genetics, Georg-August-University of G\u00f6ttingen, Grisebachstr. 8, 37077 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of General Microbiology, Institute for Microbiology and Genetics, Georg-August-University of G\u00f6ttingen, Grisebachstr. 8, 37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036484654","display_name":"Christoph Lammers","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"C. R. Lammers","raw_affiliation_strings":["Department of General Microbiology, Institute for Microbiology and Genetics, Georg-August-University of G\u00f6ttingen, Grisebachstr. 8, 37077 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of General Microbiology, Institute for Microbiology and Genetics, Georg-August-University of G\u00f6ttingen, Grisebachstr. 8, 37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006672133","display_name":"J\u00f6rg St\u00fclke","orcid":"https://orcid.org/0000-0001-5881-5390"},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"J. Stulke","raw_affiliation_strings":["Department of General Microbiology, Institute for Microbiology and Genetics, Georg-August-University of G\u00f6ttingen, Grisebachstr. 8, 37077 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of General Microbiology, Institute for Microbiology and Genetics, Georg-August-University of G\u00f6ttingen, Grisebachstr. 8, 37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5006672133"],"corresponding_institution_ids":["https://openalex.org/I74656192"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":6.4921,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.96870201,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2009","issue":"0","first_page":"bap012","last_page":"bap012"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12478","display_name":"Wikis in Education and Collaboration","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/3315","display_name":"Communication"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7084716558456421},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6055423617362976},{"id":"https://openalex.org/keywords/bacillus-subtilis","display_name":"Bacillus subtilis","score":0.5967154502868652},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.585739254951477},{"id":"https://openalex.org/keywords/web-page","display_name":"Web page","score":0.5218117237091064},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.4729219079017639},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.46082863211631775},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3944503664970398},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35137778520584106},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3037017583847046},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29840290546417236},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14236107468605042}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7084716558456421},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6055423617362976},{"id":"https://openalex.org/C2777272437","wikidata":"https://www.wikidata.org/wiki/Q131238","display_name":"Bacillus subtilis","level":3,"score":0.5967154502868652},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.585739254951477},{"id":"https://openalex.org/C21959979","wikidata":"https://www.wikidata.org/wiki/Q36774","display_name":"Web page","level":2,"score":0.5218117237091064},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.4729219079017639},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.46082863211631775},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3944503664970398},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35137778520584106},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3037017583847046},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29840290546417236},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14236107468605042},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1093/database/bap012","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap012","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap012/1020760/bap012.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:20157485","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20157485","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:goescholar:1/5848","is_oa":true,"landing_page_url":"http://resolver.sub.uni-goettingen.de/purl?gs-1/5848","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journalArticle"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/17789","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gs-1/5848","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal_article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2790307","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2790307","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bap012","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap012","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap012/1020760/bap012.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W129666705","https://openalex.org/W1543120839","https://openalex.org/W1947125612","https://openalex.org/W1970836666","https://openalex.org/W1972864050","https://openalex.org/W1981473578","https://openalex.org/W1992687305","https://openalex.org/W1994021560","https://openalex.org/W2004188992","https://openalex.org/W2006803093","https://openalex.org/W2010502047","https://openalex.org/W2011846730","https://openalex.org/W2022710553","https://openalex.org/W2045478141","https://openalex.org/W2047415418","https://openalex.org/W2065793212","https://openalex.org/W2071004407","https://openalex.org/W2077261875","https://openalex.org/W2082093843","https://openalex.org/W2100882223","https://openalex.org/W2101292724","https://openalex.org/W2102024801","https://openalex.org/W2102162073","https://openalex.org/W2102789902","https://openalex.org/W2107510307","https://openalex.org/W2109615707","https://openalex.org/W2109872885","https://openalex.org/W2118062583","https://openalex.org/W2121438763","https://openalex.org/W2122726157","https://openalex.org/W2123060905","https://openalex.org/W2125314454","https://openalex.org/W2130775386","https://openalex.org/W2132586689","https://openalex.org/W2134331533","https://openalex.org/W2140226087","https://openalex.org/W2144297593","https://openalex.org/W2144760185","https://openalex.org/W2145065529","https://openalex.org/W2153991025","https://openalex.org/W2156783270","https://openalex.org/W2160764161","https://openalex.org/W2161062388","https://openalex.org/W2164997719","https://openalex.org/W2169934605","https://openalex.org/W4211000692","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2059565715","https://openalex.org/W2901823680","https://openalex.org/W1999129612","https://openalex.org/W2116418175","https://openalex.org/W2009940763","https://openalex.org/W4361192415","https://openalex.org/W2126804125","https://openalex.org/W2946410450","https://openalex.org/W2137318037","https://openalex.org/W4386637333"],"abstract_inverted_index":{"Bacillus":[0],"subtilis":[1],"is":[2,50],"the":[3,26,53,66,69,73,76,86,109,119,121,132,136,150,175],"model":[4],"organism":[5],"for":[6,42,65,72,167],"Gram-positive":[7],"bacteria,":[8],"with":[9,143],"a":[10,38,92],"large":[11],"amount":[12],"of":[13,18,28,57,68,75,135,179],"publications":[14,147],"on":[15,31,52,118],"all":[16],"aspects":[17],"its":[19],"biology.":[20],"To":[21],"facilitate":[22],"genome":[23],"annotation":[24,40],"and":[25,45,55,71,96,148,154,177],"collection":[27],"comprehensive":[29,116],"information":[30,43,107,117,129,144],"B.":[32,155],"subtilis,":[33],"we":[34],"created":[35],"SubtiWiki":[36,104,161],"as":[37,126,128,164],"community-oriented":[39],"tool":[41],"retrieval":[44],"continuous":[46],"maintenance.":[47],"The":[48,79,138,183],"wiki":[49,139,184],"focused":[51],"needs":[54],"requirements":[56],"scientists":[58],"doing":[59],"experimental":[60],"work.":[61],"This":[62],"has":[63,140],"implications":[64],"design":[67],"interface":[70],"layout":[74],"individual":[77],"pages.":[78],"pages":[80,90,102],"can":[81,185],"be":[82,186],"accessed":[83,187],"primarily":[84],"by":[85],"gene":[87,101],"designations.":[88],"All":[89],"have":[91],"similar":[93],"flexible":[94],"structure":[95],"provide":[97],"links":[98],"to":[99,106,131,174],"related":[100,130],"in":[103,108],"or":[105,124],"World":[110],"Wide":[111],"Web.":[112],"Each":[113],"page":[114],"gives":[115],"gene,":[120],"encoded":[122],"protein":[123],"RNA":[125],"well":[127],"current":[133],"investigation":[134],"gene/protein.":[137],"been":[141],"seeded":[142],"from":[145,149],"key":[146],"most":[151],"relevant":[152],"general":[153],"subtilis-specific":[156],"databases.":[157],"We":[158],"think":[159],"that":[160,171],"might":[162],"serve":[163],"an":[165],"example":[166],"other":[168],"scientific":[169],"wikis":[170],"are":[172],"devoted":[173],"genes":[176],"proteins":[178],"one":[180],"organism.Database":[181],"URL:":[182],"at":[188],"http://subtiwiki.uni-goettingen.de/":[189]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
