{"id":"https://openalex.org/W2118022849","doi":"https://doi.org/10.1093/database/bap007","title":"Radiation Genes: a database devoted to microarrays screenings revealing transcriptome alterations induced by ionizing radiation in mammalian cells","display_name":"Radiation Genes: a database devoted to microarrays screenings revealing transcriptome alterations induced by ionizing radiation in mammalian cells","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2118022849","doi":"https://doi.org/10.1093/database/bap007","mag":"2118022849","pmid":"https://pubmed.ncbi.nlm.nih.gov/20157480"},"language":"en","primary_location":{"id":"doi:10.1093/database/bap007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap007","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap007/16728437/bap007.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap007/16728437/bap007.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016468953","display_name":"Francesco Chiani","orcid":"https://orcid.org/0000-0002-8887-3900"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Francesco Chiani","raw_affiliation_strings":["Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047126178","display_name":"Camilla Iannone","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Camilla Iannone","raw_affiliation_strings":["Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078115197","display_name":"Rodolfo Negri","orcid":"https://orcid.org/0000-0002-4806-7090"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rodolfo Negri","raw_affiliation_strings":["Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004444915","display_name":"Daniele Paoletti","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniele Paoletti","raw_affiliation_strings":["Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049391887","display_name":"Mattia D\u2019Antonio","orcid":"https://orcid.org/0000-0003-2470-9797"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mattia D\u2019Antonio","raw_affiliation_strings":["Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110358657","display_name":"Paolo D\u2019Onorio De Meo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Paolo D\u2019onorio De Meo","raw_affiliation_strings":["Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086235625","display_name":"Tiziana Castrignan\u00f2","orcid":"https://orcid.org/0000-0002-0689-6720"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Tiziana Castrignan\u00f2","raw_affiliation_strings":["Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Functional Genomics and Proteomics of Model Systems, Department of Cell Biology and Development, University of Rome, La Sapienza and 2Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0 e Ricerca, Rome, Italy","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5086235625"],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.3779,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.61717289,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"2009","issue":null,"first_page":"bap007","last_page":"bap007"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6781255006790161},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5972018837928772},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5506889820098877},{"id":"https://openalex.org/keywords/ionizing-radiation","display_name":"Ionizing radiation","score":0.5011053085327148},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.42831000685691833},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4110637903213501},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35558390617370605},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.324137419462204},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32330939173698425},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21860337257385254},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19887778162956238},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10043591260910034},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08064672350883484},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07973721623420715}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6781255006790161},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5972018837928772},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5506889820098877},{"id":"https://openalex.org/C18231593","wikidata":"https://www.wikidata.org/wiki/Q186161","display_name":"Ionizing radiation","level":3,"score":0.5011053085327148},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.42831000685691833},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4110637903213501},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35558390617370605},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.324137419462204},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32330939173698425},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21860337257385254},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19887778162956238},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10043591260910034},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08064672350883484},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07973721623420715},{"id":"https://openalex.org/C185544564","wikidata":"https://www.wikidata.org/wiki/Q81197","display_name":"Nuclear physics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C111337013","wikidata":"https://www.wikidata.org/wiki/Q2737837","display_name":"Irradiation","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bap007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap007","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap007/16728437/bap007.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:20157480","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20157480","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:iris.uniroma1.it:11573/123896","is_oa":false,"landing_page_url":"http://hdl.handle.net/11573/123896","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2790304","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2790304","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bap007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap007","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap007/16728437/bap007.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.47999998927116394,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320325394","display_name":"Ministry of Minority Affairs","ror":"https://ror.org/050kded90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118022849.pdf","grobid_xml":"https://content.openalex.org/works/W2118022849.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W176066471","https://openalex.org/W584551010","https://openalex.org/W1978612943","https://openalex.org/W1986311655","https://openalex.org/W1995701014","https://openalex.org/W2013444425","https://openalex.org/W2030472002","https://openalex.org/W2047447041","https://openalex.org/W2096921397","https://openalex.org/W2098132781","https://openalex.org/W2098454071","https://openalex.org/W2118364944","https://openalex.org/W2135482228","https://openalex.org/W2141326128","https://openalex.org/W2151058265","https://openalex.org/W2157795344","https://openalex.org/W2169809006","https://openalex.org/W2175764635","https://openalex.org/W2245294724","https://openalex.org/W4294107304","https://openalex.org/W6646977224","https://openalex.org/W6649032976","https://openalex.org/W6653717688","https://openalex.org/W6658059702","https://openalex.org/W6662222868","https://openalex.org/W6674326701","https://openalex.org/W6674547384","https://openalex.org/W6674599156","https://openalex.org/W6681052721","https://openalex.org/W6682093604","https://openalex.org/W6684895669","https://openalex.org/W6685336938","https://openalex.org/W6842595098"],"related_works":["https://openalex.org/W2798735802","https://openalex.org/W4206616768","https://openalex.org/W2399513595","https://openalex.org/W2911908587","https://openalex.org/W4206147900","https://openalex.org/W2501493637","https://openalex.org/W4388386498","https://openalex.org/W2517584471","https://openalex.org/W4248584036","https://openalex.org/W2393727419"],"abstract_inverted_index":{"The":[0,118,139],"analysis":[1],"of":[2,6,36,145],"the":[3,17,28,30,41,45],"great":[4],"extent":[5],"data":[7,55,83,125,165],"generated":[8],"by":[9],"using":[10],"DNA":[11],"microarrays":[12,124],"technologies":[13],"has":[14],"shown":[15],"that":[16],"transcriptional":[18],"response":[19],"to":[20,53,65,159,163],"radiation":[21,150],"can":[22],"be":[23,75],"considerably":[24],"different":[25,62,87],"depending":[26],"on":[27],"quality,":[29,151],"dose":[31,34,153],"range":[32],"and":[33,77,129,136,155,167],"rate":[35,154],"radiation,":[37],"as":[38,40,149,158],"well":[39],"timing":[42],"selected":[43],"for":[44],"analysis.":[46],"At":[47],"present,":[48],"it":[49,104,142],"is":[50,84,105],"very":[51],"difficult":[52],"integrate":[54],"obtained":[56],"under":[57],"several":[58],"experimental":[59],"conditions":[60],"in":[61,86,92,98,101,107,143],"biological":[63],"systems":[64],"reach":[66],"overall":[67],"conclusions":[68],"or":[69,90,94,97,132],"build":[70],"regulatory":[71],"models":[72],"which":[73,110],"may":[74],"tested":[76],"validated.":[78],"In":[79],"fact,":[80],"most":[81],"available":[82],"buried":[85],"websites,":[88],"public":[89,130],"private,":[91],"general":[93],"local":[95,128],"repositories":[96,131],"files":[99],"included":[100],"published":[102,134],"papers;":[103],"often":[106],"various":[108,127],"formats,":[109],"makes":[111],"a":[112],"wide":[113],"comparison":[114],"even":[115],"more":[116],"difficult.":[117],"Radiation":[119],"Genes":[120],"Database":[121],"(http://www.caspur.it/RadiationGenes)":[122],"collects":[123],"from":[126,133],"papers":[135],"supplementary":[137],"materials.":[138],"database":[140],"classifies":[141],"terms":[144],"significant":[146],"variables,":[147],"such":[148],"dose,":[152],"sampling":[156],"timing,":[157],"provide":[160],"user-friendly":[161],"tools":[162],"facilitate":[164],"integration":[166],"comparison.":[168]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
