{"id":"https://openalex.org/W7163738631","doi":"https://doi.org/10.1093/database/baag033","title":"PhaLP 2.0: extending the community-oriented phage lysin database with a SUBLYME pipeline for metagenomic discovery","display_name":"PhaLP 2.0: extending the community-oriented phage lysin database with a SUBLYME pipeline for metagenomic discovery","publication_year":2026,"publication_date":"2026-01-01","ids":{"openalex":"https://openalex.org/W7163738631","doi":"https://doi.org/10.1093/database/baag033","pmid":"https://pubmed.ncbi.nlm.nih.gov/42247592"},"language":"en","primary_location":{"id":"doi:10.1093/database/baag033","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baag033","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baag033","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5115734251","display_name":"Alexandre Boulay","orcid":null},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"HOGENT University of Applied Sciences and Arts","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["BE","CA"],"is_corresponding":false,"raw_author_name":"Alexandre Boulay","raw_affiliation_strings":["Centre Nutrition, Sant\u00e9 et Soci\u00e9t\u00e9 (NUTRISS), Institute of Nutrition and Functional Foods (INAF), Universit\u00e9 Laval , 2440 Bd Hochelaga Suite 1710, Qu\u00e9bec, Qu\u00e9bec G1V 0A6 ,","Department of Biotechnology, Ghent University, Valentin Vaerwyckweg 1 , Ghent 9000 ,","D\u00e9partement de biochimie, de microbiologie et de bio-informatique, Universit\u00e9 Laval , 1045 avenue de la M\u00e9decine, Qu\u00e9bec, Qu\u00e9bec G1V 0A6 ,"],"raw_orcid":"https://orcid.org/0009-0000-5796-8598","affiliations":[{"raw_affiliation_string":"Centre Nutrition, Sant\u00e9 et Soci\u00e9t\u00e9 (NUTRISS), Institute of Nutrition and Functional Foods (INAF), Universit\u00e9 Laval , 2440 Bd Hochelaga Suite 1710, Qu\u00e9bec, Qu\u00e9bec G1V 0A6 ,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Department of Biotechnology, Ghent University, Valentin Vaerwyckweg 1 , Ghent 9000 ,","institution_ids":["https://openalex.org/I12607205","https://openalex.org/I32597200"]},{"raw_affiliation_string":"D\u00e9partement de biochimie, de microbiologie et de bio-informatique, Universit\u00e9 Laval , 1045 avenue de la M\u00e9decine, Qu\u00e9bec, Qu\u00e9bec G1V 0A6 ,","institution_ids":["https://openalex.org/I43406934"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5129161370","display_name":"Victor N\u00e9meth","orcid":null},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"HOGENT University of Applied Sciences and Arts","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Victor N\u00e9meth","raw_affiliation_strings":["Department of Biotechnology, Ghent University, Valentin Vaerwyckweg 1 , Ghent 9000 ,","KERMIT, Department of Data Analysis and Mathematical Modelling, Ghent University, Coupure links 653, Ghent 9000,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Ghent University, Valentin Vaerwyckweg 1 , Ghent 9000 ,","institution_ids":["https://openalex.org/I12607205","https://openalex.org/I32597200"]},{"raw_affiliation_string":"KERMIT, Department of Data Analysis and Mathematical Modelling, Ghent University, Coupure links 653, Ghent 9000,","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040222999","display_name":"Bjorn Criel","orcid":"https://orcid.org/0000-0002-6856-5863"},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"HOGENT University of Applied Sciences and Arts","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Bjorn Criel","raw_affiliation_strings":["Department of Biotechnology, Ghent University, Valentin Vaerwyckweg 1 , Ghent 9000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Ghent University, Valentin Vaerwyckweg 1 , Ghent 9000 ,","institution_ids":["https://openalex.org/I12607205","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079406761","display_name":"Michiel Stock","orcid":"https://orcid.org/0000-0003-0903-6061"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Michiel Stock","raw_affiliation_strings":["KERMIT, Department of Data Analysis and Mathematical Modelling, Ghent University, Coupure links 653, Ghent 9000,"],"raw_orcid":"https://orcid.org/0000-0003-0903-6061","affiliations":[{"raw_affiliation_string":"KERMIT, Department of Data Analysis and Mathematical Modelling, Ghent University, Coupure links 653, Ghent 9000,","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012437460","display_name":"Bernard De Baets","orcid":"https://orcid.org/0000-0002-3876-620X"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Bernard De\u00a0Baets","raw_affiliation_strings":["KERMIT, Department of Data Analysis and Mathematical Modelling, Ghent University, Coupure links 653, Ghent 9000,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KERMIT, Department of Data Analysis and Mathematical Modelling, Ghent University, Coupure links 653, Ghent 9000,","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065367548","display_name":"Clovis Galiez","orcid":"https://orcid.org/0000-0002-0560-6023"},"institutions":[{"id":"https://openalex.org/I106785703","display_name":"Institut polytechnique de Grenoble","ror":"https://ror.org/05sbt2524","country_code":"FR","type":"education","lineage":["https://openalex.org/I106785703","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210149092","display_name":"Laboratoire Jean Kuntzmann","ror":"https://ror.org/04ett5b41","country_code":"FR","type":"facility","lineage":["https://openalex.org/I106785703","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210149092","https://openalex.org/I899635006","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I899635006","display_name":"Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/02rx3b187","country_code":"FR","type":"education","lineage":["https://openalex.org/I899635006"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Clovis Galiez","raw_affiliation_strings":["Univ. Grenoble Alpes, CNRS, Grenoble INP , LJK, 38000 Grenoble ,"],"raw_orcid":"https://orcid.org/0000-0002-0560-6023","affiliations":[{"raw_affiliation_string":"Univ. Grenoble Alpes, CNRS, Grenoble INP , LJK, 38000 Grenoble ,","institution_ids":["https://openalex.org/I106785703","https://openalex.org/I1294671590","https://openalex.org/I4210149092","https://openalex.org/I899635006"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018522008","display_name":"Elsa Rousseau","orcid":"https://orcid.org/0000-0001-7013-6024"},"institutions":[{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Elsa Rousseau","raw_affiliation_strings":["Centre Nutrition, Sant\u00e9 et Soci\u00e9t\u00e9 (NUTRISS), Institute of Nutrition and Functional Foods (INAF), Universit\u00e9 Laval , 2440 Bd Hochelaga Suite 1710, Qu\u00e9bec, Qu\u00e9bec G1V 0A6 ,","Centre de Recherche en Donn\u00e9es Massives (CRDM) de l\u2019Universit\u00e9 Laval , 1065 Avenue de la M\u00e9decine, Qu\u00e9bec, Qu\u00e9bec G1V 0A6 ,","D\u00e9partement d\u2019informatique et de g\u00e9nie logiciel, Universit\u00e9 Laval , 1045 avenue de la M\u00e9decine, Qu\u00e9bec, Qu\u00e9bec G1V 0A6 ,","Institut Intelligence et Donn\u00e9es (IID), Universit\u00e9 Laval , 1065 Avenue de la M\u00e9decine, Qu\u00e9bec, Qu\u00e9bec G1V 0A6 ,"],"raw_orcid":"https://orcid.org/0000-0001-7013-6024","affiliations":[{"raw_affiliation_string":"Centre Nutrition, Sant\u00e9 et Soci\u00e9t\u00e9 (NUTRISS), Institute of Nutrition and Functional Foods (INAF), Universit\u00e9 Laval , 2440 Bd Hochelaga Suite 1710, Qu\u00e9bec, Qu\u00e9bec G1V 0A6 ,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Centre de Recherche en Donn\u00e9es Massives (CRDM) de l\u2019Universit\u00e9 Laval , 1065 Avenue de la M\u00e9decine, Qu\u00e9bec, Qu\u00e9bec G1V 0A6 ,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"D\u00e9partement d\u2019informatique et de g\u00e9nie logiciel, Universit\u00e9 Laval , 1045 avenue de la M\u00e9decine, Qu\u00e9bec, Qu\u00e9bec G1V 0A6 ,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Institut Intelligence et Donn\u00e9es (IID), Universit\u00e9 Laval , 1065 Avenue de la M\u00e9decine, Qu\u00e9bec, Qu\u00e9bec G1V 0A6 ,","institution_ids":["https://openalex.org/I43406934"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138063372","display_name":"Yves Briers","orcid":"https://orcid.org/0000-0001-7723-1040"},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"HOGENT University of Applied Sciences and Arts","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Yves Briers","raw_affiliation_strings":["Department of Biotechnology, Ghent University, Valentin Vaerwyckweg 1 , Ghent 9000 ,"],"raw_orcid":"https://orcid.org/0000-0001-7723-1040","affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Ghent University, Valentin Vaerwyckweg 1 , Ghent 9000 ,","institution_ids":["https://openalex.org/I12607205","https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5138043314","display_name":"Roberto V\u00e1zquez","orcid":"https://orcid.org/0000-0002-7919-552X"},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"HOGENT University of Applied Sciences and Arts","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210099160","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Respiratorias","ror":"https://ror.org/0119pby33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210099160","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]}],"countries":["BE","ES"],"is_corresponding":true,"raw_author_name":"Roberto V\u00e1zquez","raw_affiliation_strings":["Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Respiratorias (CIBERES), Av. Monforte de Lemos 3-5 , Madrid 28029 ,","Department of Biotechnology, Ghent University, Valentin Vaerwyckweg 1 , Ghent 9000 ,"],"raw_orcid":"https://orcid.org/0000-0002-7919-552X","affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Respiratorias (CIBERES), Av. Monforte de Lemos 3-5 , Madrid 28029 ,","institution_ids":["https://openalex.org/I4210099160"]},{"raw_affiliation_string":"Department of Biotechnology, Ghent University, Valentin Vaerwyckweg 1 , Ghent 9000 ,","institution_ids":["https://openalex.org/I12607205","https://openalex.org/I32597200"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5138043314","https://openalex.org/A5138063372"],"corresponding_institution_ids":["https://openalex.org/I12607205","https://openalex.org/I32597200","https://openalex.org/I4210099160"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.54930811,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2026","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.00430000014603138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.00279999990016222,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lysin","display_name":"Lysin","score":0.9868000149726868},{"id":"https://openalex.org/keywords/lytic-cycle","display_name":"Lytic cycle","score":0.6590999960899353},{"id":"https://openalex.org/keywords/bacteriophage","display_name":"Bacteriophage","score":0.6513000130653381},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5741000175476074},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4984000027179718},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.4221999943256378},{"id":"https://openalex.org/keywords/emulation","display_name":"Emulation","score":0.3822000026702881}],"concepts":[{"id":"https://openalex.org/C22538091","wikidata":"https://www.wikidata.org/wiki/Q2646830","display_name":"Lysin","level":5,"score":0.9868000149726868},{"id":"https://openalex.org/C182615771","wikidata":"https://www.wikidata.org/wiki/Q1369386","display_name":"Lytic cycle","level":3,"score":0.6590999960899353},{"id":"https://openalex.org/C2776441376","wikidata":"https://www.wikidata.org/wiki/Q165028","display_name":"Bacteriophage","level":4,"score":0.6513000130653381},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5741000175476074},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5393999814987183},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4984000027179718},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49810001254081726},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43209999799728394},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.4221999943256378},{"id":"https://openalex.org/C149810388","wikidata":"https://www.wikidata.org/wiki/Q5374873","display_name":"Emulation","level":2,"score":0.3822000026702881},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34380000829696655},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32820001244544983},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.32190001010894775},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3025999963283539},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.29760000109672546},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.289900004863739},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.28630000352859497},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.2822999954223633},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.28209999203681946},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.26589998602867126},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2648000121116638},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2540999948978424}],"mesh":[{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baag033","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baag033","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:42247592","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42247592","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13237592","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13237592/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baag033","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baag033","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2008576635","display_name":null,"funder_award_id":"01P10022","funder_id":"https://openalex.org/F4320335227","funder_display_name":"Bijzonder Onderzoeksfonds UGent"},{"id":"https://openalex.org/G2508219703","display_name":"Strain promoted thiol-yne click reactions for biopharmaceutical applications","funder_award_id":"1S91526N","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G3320254991","display_name":"Bourses de ma\u00eetrise en recherche \u2014 Micro-organismes, Nutrition","funder_award_id":"325947","funder_id":"https://openalex.org/F4320334841","funder_display_name":"Fonds de recherche du Qu\u00e9bec \u2013 Nature et technologies"},{"id":"https://openalex.org/G4308208107","display_name":"Directed evolution of modular proteins driven by machine learning: the VersaTile Platform 2.0","funder_award_id":"1S38519N","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G6467675658","display_name":"Bourses de carri\u00e8re Junior 1 en intelligence artificielle et sant\u00e9 num\u00e9rique \u2014 Services de sant\u00e9","funder_award_id":"307935","funder_id":"https://openalex.org/F4320334618","funder_display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9"}],"funders":[{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320334618","display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9","ror":"https://ror.org/02eqrsj93"},{"id":"https://openalex.org/F4320334841","display_name":"Fonds de recherche du Qu\u00e9bec \u2013 Nature et technologies","ror":"https://ror.org/00b9f9778"},{"id":"https://openalex.org/F4320335227","display_name":"Bijzonder Onderzoeksfonds UGent","ror":"https://ror.org/00cv9y106"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1957232976","https://openalex.org/W1966313166","https://openalex.org/W2015642465","https://openalex.org/W2026292570","https://openalex.org/W2063206735","https://openalex.org/W2100402024","https://openalex.org/W2101291993","https://openalex.org/W2143485490","https://openalex.org/W2153843103","https://openalex.org/W2166637863","https://openalex.org/W2767759966","https://openalex.org/W2791796577","https://openalex.org/W2802299626","https://openalex.org/W2950954328","https://openalex.org/W3003557640","https://openalex.org/W3174759005","https://openalex.org/W3177500196","https://openalex.org/W3189053267","https://openalex.org/W3205000511","https://openalex.org/W4200299595","https://openalex.org/W4281790889","https://openalex.org/W4287378205","https://openalex.org/W4289262185","https://openalex.org/W4389088427","https://openalex.org/W4391316987","https://openalex.org/W4399389955","https://openalex.org/W4399908084","https://openalex.org/W4403919252","https://openalex.org/W4404458588","https://openalex.org/W4409387847","https://openalex.org/W4414331000","https://openalex.org/W4414458008","https://openalex.org/W4415147619","https://openalex.org/W4416096963","https://openalex.org/W4417105621"],"related_works":[],"abstract_inverted_index":{"As":[0],"biology":[1],"becomes":[2],"increasingly":[3],"data-driven,":[4],"so":[5],"does":[6],"the":[7,75,106,110,148,163,207],"field":[8],"of":[9,71,78,82,109,141,150,165],"phage":[10],"lysins,":[11],"enzymes":[12],"that":[13,81],"degrade":[14],"bacterial":[15],"cell":[16],"walls":[17],"and":[18,39,95,126,176,184,196,203,213],"offer":[19],"promising":[20],"alternatives":[21],"to":[22,42,56,93,119,172],"traditional":[23],"antibiotics.":[24],"Five":[25],"years":[26],"ago,":[27],"we":[28,48,85,114],"introduced":[29],"PhaLP,":[30],"a":[31,88,158,194],"centralized":[32],"resource":[33],"for":[34,199,209],"Phage":[35],"Lytic":[36],"Protein":[37],"sequences":[38,108,155],"associated":[40],"metadata":[41],"support":[43,116],"global":[44],"research":[45,63],"efforts.":[46],"Here,":[47],"present":[49],"PhaLP":[50,112,177,191],"2.0,":[51],"an":[52,137],"enhanced":[53],"database":[54],"designed":[55,92],"address":[57],"key":[58],"challenges":[59],"in":[60,124],"computational":[61],"lysin":[62,154,167,200],"by":[64],"integrating":[65],"newly":[66],"identified":[67],"lysins":[68,79,121],"from":[69,99,105,122,156,170],"thousands":[70],"metagenomes.":[72],"To":[73],"expand":[74],"known":[76,166],"diversity":[77],"beyond":[80],"cultured":[83],"phages,":[84],"developed":[86],"SUBLYME,":[87],"protein-embedding-based":[89],"machine-learning":[90],"Software":[91],"Uncover":[94],"classify":[96,127],"Bacteriophage":[97],"Lysins":[98],"Metagenomic":[100],"datasets.":[101],"Using":[102],"embeddings":[103],"derived":[104],"well-curated":[107],"original":[111],"database,":[113,161],"trained":[115],"vector":[117],"machines":[118],"distinguish":[120],"non-lysins":[123],"viromes":[125],"them":[128],"as":[129,193],"endolysins":[130],"or":[131],"virion-associated":[132],"lysins.":[133],"The":[134],"models":[135],"achieved":[136],"average":[138],"F1":[139],"score":[140],"98%":[142],"on":[143],"held-out":[144],"clusters.":[145],"SUBLYME":[146,175],"enabled":[147],"discovery":[149],"743":[151],"000":[152],"new":[153],"EnVhogDB,":[157],"virome-derived":[159],"protein":[160],"increasing":[162],"number":[164],"clusters":[168],"40-fold,":[169],"1000":[171],"40":[173],"000.":[174],"2.0":[178,192],"are":[179],"accessible":[180],"online":[181],"at":[182],"https://github.com/Rousseau-Team/sublyme":[183],"https://phalp.ugent.be,":[185],"respectively.":[186],"Together,":[187],"these":[188],"advances":[189],"establish":[190],"comprehensive":[195],"scalable":[197],"portal":[198],"discovery,":[201],"classification,":[202],"sequence":[204],"analysis,":[205],"paving":[206],"way":[208],"future":[210],"antibacterial":[211],"applications":[212],"evolutionary":[214],"insights.":[215]},"counts_by_year":[],"updated_date":"2026-08-16T07:02:28.622633","created_date":"2026-06-07T00:00:00"}
