{"id":"https://openalex.org/W7163320755","doi":"https://doi.org/10.1093/database/baag029","title":"GUTAID: a curated database linking gut microbial antigens to autoimmune mechanisms","display_name":"GUTAID: a curated database linking gut microbial antigens to autoimmune mechanisms","publication_year":2026,"publication_date":"2026-01-01","ids":{"openalex":"https://openalex.org/W7163320755","doi":"https://doi.org/10.1093/database/baag029","pmid":"https://pubmed.ncbi.nlm.nih.gov/42233252"},"language":"en","primary_location":{"id":"doi:10.1093/database/baag029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baag029","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baag029","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5137722401","display_name":"Laibah Hashmi","orcid":null},"institutions":[{"id":"https://openalex.org/I929597975","display_name":"National University of Sciences and Technology","ror":"https://ror.org/03w2j5y17","country_code":"PK","type":"education","lineage":["https://openalex.org/I929597975"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Laibah Hashmi","raw_affiliation_strings":["National University of Sciences & Technology (NUST) Metagenomics Discovery Lab, Department of Sciences, School of Interdisciplinary Engineering & Sciences (SINES), , Srinagar Highway, Sector H-12, Islamabad 44000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National University of Sciences & Technology (NUST) Metagenomics Discovery Lab, Department of Sciences, School of Interdisciplinary Engineering & Sciences (SINES), , Srinagar Highway, Sector H-12, Islamabad 44000 ,","institution_ids":["https://openalex.org/I929597975"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5134086854","display_name":"Shoaib Ur Rehman","orcid":null},"institutions":[{"id":"https://openalex.org/I929597975","display_name":"National University of Sciences and Technology","ror":"https://ror.org/03w2j5y17","country_code":"PK","type":"education","lineage":["https://openalex.org/I929597975"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Shoaib Ur Rehman","raw_affiliation_strings":["National University of Sciences & Technology (NUST) Metagenomics Discovery Lab, Department of Sciences, School of Interdisciplinary Engineering & Sciences (SINES), , Srinagar Highway, Sector H-12, Islamabad 44000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National University of Sciences & Technology (NUST) Metagenomics Discovery Lab, Department of Sciences, School of Interdisciplinary Engineering & Sciences (SINES), , Srinagar Highway, Sector H-12, Islamabad 44000 ,","institution_ids":["https://openalex.org/I929597975"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031104388","display_name":"Farzana Jabeen","orcid":null},"institutions":[{"id":"https://openalex.org/I929597975","display_name":"National University of Sciences and Technology","ror":"https://ror.org/03w2j5y17","country_code":"PK","type":"education","lineage":["https://openalex.org/I929597975"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Farzana Jabeen","raw_affiliation_strings":["School of Electrical Engineering and Computer Science (SEECS), National University of Sciences & Technology (NUST) , Srinagar Highway, Sector H-12, Islamabad 44000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science (SEECS), National University of Sciences & Technology (NUST) , Srinagar Highway, Sector H-12, Islamabad 44000 ,","institution_ids":["https://openalex.org/I929597975"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076103542","display_name":"Masood Ur Rehman Kayani","orcid":"https://orcid.org/0000-0002-7425-1756"},"institutions":[{"id":"https://openalex.org/I929597975","display_name":"National University of Sciences and Technology","ror":"https://ror.org/03w2j5y17","country_code":"PK","type":"education","lineage":["https://openalex.org/I929597975"]}],"countries":["PK"],"is_corresponding":true,"raw_author_name":"Masood Ur Rehman Kayani","raw_affiliation_strings":["National University of Sciences & Technology (NUST) Metagenomics Discovery Lab, Department of Sciences, School of Interdisciplinary Engineering & Sciences (SINES), , Srinagar Highway, Sector H-12, Islamabad 44000 ,"],"raw_orcid":"https://orcid.org/0000-0002-7425-1756","affiliations":[{"raw_affiliation_string":"National University of Sciences & Technology (NUST) Metagenomics Discovery Lab, Department of Sciences, School of Interdisciplinary Engineering & Sciences (SINES), , Srinagar Highway, Sector H-12, Islamabad 44000 ,","institution_ids":["https://openalex.org/I929597975"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5076103542"],"corresponding_institution_ids":["https://openalex.org/I929597975"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.66389564,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2026","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.37299999594688416,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.37299999594688416,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11171","display_name":"Diabetes and associated disorders","score":0.10279999673366547,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.06689999997615814,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.6347000002861023},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.5716999769210815},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.5210999846458435},{"id":"https://openalex.org/keywords/gut-flora","display_name":"Gut flora","score":0.42669999599456787},{"id":"https://openalex.org/keywords/dysbiosis","display_name":"Dysbiosis","score":0.3634999990463257},{"id":"https://openalex.org/keywords/autoimmune-disease","display_name":"Autoimmune disease","score":0.3508000075817108},{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.3352000117301941},{"id":"https://openalex.org/keywords/antigenic-variation","display_name":"Antigenic variation","score":0.3285999894142151}],"concepts":[{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.6347000002861023},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6144000291824341},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5716999769210815},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.5210999846458435},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5088000297546387},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.447299987077713},{"id":"https://openalex.org/C539455810","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut flora","level":2,"score":0.42669999599456787},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.39579999446868896},{"id":"https://openalex.org/C2777165150","wikidata":"https://www.wikidata.org/wiki/Q269334","display_name":"Dysbiosis","level":3,"score":0.3634999990463257},{"id":"https://openalex.org/C2779075594","wikidata":"https://www.wikidata.org/wiki/Q8084905","display_name":"Autoimmune disease","level":3,"score":0.3508000075817108},{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.3352000117301941},{"id":"https://openalex.org/C191942190","wikidata":"https://www.wikidata.org/wiki/Q4774739","display_name":"Antigenic variation","level":3,"score":0.3285999894142151},{"id":"https://openalex.org/C180223184","wikidata":"https://www.wikidata.org/wiki/Q4839986","display_name":"Bacterial genetics","level":4,"score":0.2784000039100647},{"id":"https://openalex.org/C108249834","wikidata":"https://www.wikidata.org/wiki/Q3922363","display_name":"Antigen processing","level":5,"score":0.27810001373291016},{"id":"https://openalex.org/C2780130043","wikidata":"https://www.wikidata.org/wiki/Q192360","display_name":"Autoimmunity","level":3,"score":0.27070000767707825},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.26919999718666077},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.2678000032901764},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.2646999955177307},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.258899986743927},{"id":"https://openalex.org/C195814341","wikidata":"https://www.wikidata.org/wiki/Q494918","display_name":"Protein microarray","level":5,"score":0.25540000200271606},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.2517000138759613}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000096104","descriptor_name":"Biocuration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000096104","descriptor_name":"Biocuration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000942","descriptor_name":"Antigens, Bacterial","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000942","descriptor_name":"Antigens, Bacterial","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D001327","descriptor_name":"Autoimmune Diseases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D001327","descriptor_name":"Autoimmune Diseases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D001327","descriptor_name":"Autoimmune Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D001327","descriptor_name":"Autoimmune Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015551","descriptor_name":"Autoimmunity","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D015551","descriptor_name":"Autoimmunity","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baag029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baag029","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:42233252","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42233252","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13231167","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13231167/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baag029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baag029","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323191","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1969853939","https://openalex.org/W1994766602","https://openalex.org/W2018896468","https://openalex.org/W2019355614","https://openalex.org/W2037420833","https://openalex.org/W2056010835","https://openalex.org/W2097728608","https://openalex.org/W2102367710","https://openalex.org/W2106171259","https://openalex.org/W2148226248","https://openalex.org/W2163782220","https://openalex.org/W2322763599","https://openalex.org/W2789260861","https://openalex.org/W2801343089","https://openalex.org/W2809017655","https://openalex.org/W2983698537","https://openalex.org/W3121536476","https://openalex.org/W3124906490","https://openalex.org/W4206915952","https://openalex.org/W4283763451","https://openalex.org/W4293567381","https://openalex.org/W4296103269","https://openalex.org/W4304116809","https://openalex.org/W4322770111","https://openalex.org/W4387343638","https://openalex.org/W4390877197"],"related_works":[],"abstract_inverted_index":{"Gut":[0],"dysbiosis":[1],"is":[2],"widely":[3],"recognized":[4],"as":[5,11],"a":[6,58,127,150],"contributor":[7],"to":[8,15,40,77],"autoimmune":[9,43,69,176],"diseases,":[10],"it":[12],"can":[13,142],"lead":[14],"the":[16,41,120],"expression":[17],"of":[18,61,164],"microbial":[19,37,63,166],"antigens":[20,64,86,167],"that":[21,87],"disrupt":[22],"immune":[23,101],"regulation":[24],"through":[25,45,89,126],"specific":[26,42],"molecular":[27,91,98],"mechanisms.":[28,70],"However,":[29],"existing":[30],"resources":[31],"do":[32],"not":[33],"systematically":[34],"link":[35],"gut":[36,62,165],"antigen":[38],"sequences":[39,108],"mechanisms":[44],"which":[46],"they":[47],"act.":[48],"Here,":[49],"we":[50],"present":[51],"GUTAID":[52,159],"(Gut":[53],"Microbes":[54],"in":[55,175],"Autoimmune":[56],"Disorders),":[57],"literature-curated":[59],"database":[60,121],"annotated":[65],"with":[66,117,132],"experimentally":[67],"supported":[68],"Peer-reviewed":[71],"studies":[72],"published":[73],"from":[74,111],"October":[75],"1970":[76],"September":[78],"2024":[79],"were":[80,109,124],"manually":[81],"screened,":[82],"yielding":[83],"73":[84],"potential":[85],"operate":[88],"nine":[90],"mechanisms,":[92],"including":[93],"protein":[94,107],"citrullination,":[95],"epitope":[96],"spreading,":[97],"mimicry,":[99],"and":[100,113,138,157,168,172],"modulation,":[102],"amongst":[103],"others.":[104],"The":[105],"corresponding":[106],"retrieved":[110],"UniProtKB,":[112],"redundancy":[114],"was":[115],"removed":[116],"MMseqs2.":[118],"For":[119],"implementation,":[122],"data":[123],"delivered":[125],"lightweight":[128],"LAMP":[129],"(Linux-Apache-MySQL/MariaDB-PHP)":[130],"stack":[131],"server-side":[133],"HTML/Bootstrap":[134],"rendering,":[135],"MySQL":[136],"indexing,":[137],"HTTPS-secured":[139],"downloads.":[140],"Users":[141],"browse,":[143],"keyword-search,":[144],"or":[145],"bulk-download":[146],"sequence":[147],"archives":[148],"via":[149],"five-tab":[151],"interface":[152],"(Home,":[153],"Downloads,":[154],"Search,":[155],"Team,":[156],"About).":[158],"thus":[160],"enables":[161],"mechanism-oriented":[162],"exploration":[163],"supports":[169],"downstream":[170],"biomarker":[171],"therapeutic":[173],"discovery":[174],"research.":[177],"Database":[178],"URL:":[179],"https://gutaid.mgdiscoverylab.com/.":[180]},"counts_by_year":[],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2026-06-04T00:00:00"}
