{"id":"https://openalex.org/W4410700804","doi":"https://doi.org/10.1093/database/baag025","title":"TEITbase: a database for transposable element (TE)-initiated transcripts in human cancers","display_name":"TEITbase: a database for transposable element (TE)-initiated transcripts in human cancers","publication_year":2026,"publication_date":"2026-01-01","ids":{"openalex":"https://openalex.org/W4410700804","doi":"https://doi.org/10.1093/database/baag025","pmid":"https://pubmed.ncbi.nlm.nih.gov/42153345"},"language":"en","primary_location":{"id":"doi:10.1093/database/baag025","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baag025","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baag025","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101368298","display_name":"Yun Zhang","orcid":"https://orcid.org/0009-0001-5981-2279"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yun Zhang","raw_affiliation_strings":["School of Basic Medical Sciences, Peking University Health Science Center Department of Medical Bioinformatics, , Beijing 100191 ,","Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 009, China"],"raw_orcid":"https://orcid.org/0009-0001-5981-2279","affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Peking University Health Science Center Department of Medical Bioinformatics, , Beijing 100191 ,","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 009, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005413673","display_name":"Jianqi She","orcid":"https://orcid.org/0000-0001-7210-6638"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianqi She","raw_affiliation_strings":["School of Basic Medical Sciences, Peking University Health Science Center Department of Microbiology & Infectious Disease Center, , Beijing 100191 ,","School of Basic Medical Sciences, Peking University Health Science Center Department of Radiation Medicine, , Beijing 100191 ,","Department of Microbiology & Infectious Disease Center, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China"],"raw_orcid":"https://orcid.org/0000-0001-7210-6638","affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Peking University Health Science Center Department of Microbiology & Infectious Disease Center, , Beijing 100191 ,","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"School of Basic Medical Sciences, Peking University Health Science Center Department of Radiation Medicine, , Beijing 100191 ,","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Microbiology & Infectious Disease Center, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090320683","display_name":"Xueyan Hu","orcid":"https://orcid.org/0000-0002-4253-3564"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xueyan Hu","raw_affiliation_strings":["School of Basic Medical Sciences, Peking University Health Science Center Department of Microbiology & Infectious Disease Center, , Beijing 100191 ,","Department of Microbiology & Infectious Disease Center, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China"],"raw_orcid":"https://orcid.org/0000-0002-4253-3564","affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Peking University Health Science Center Department of Microbiology & Infectious Disease Center, , Beijing 100191 ,","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Microbiology & Infectious Disease Center, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067907338","display_name":"Yueqi Jin","orcid":"https://orcid.org/0000-0003-0225-6512"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yueqi Jin","raw_affiliation_strings":["School of Basic Medical Sciences, Peking University Health Science Center Department of Medical Bioinformatics, , Beijing 100191 ,","Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 009, China"],"raw_orcid":"https://orcid.org/0000-0003-0225-6512","affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Peking University Health Science Center Department of Medical Bioinformatics, , Beijing 100191 ,","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 009, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060603713","display_name":"Changyu Tao","orcid":"https://orcid.org/0000-0001-7333-6822"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changyu Tao","raw_affiliation_strings":["Histology and Embryology, School of Basic Medical Sciences, Peking University Health Science Center Department of Human Anatomy, , Beijing 100191 ,","Department of Human Anatomy, Histology and Embryology, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China"],"raw_orcid":"https://orcid.org/0000-0001-7333-6822","affiliations":[{"raw_affiliation_string":"Histology and Embryology, School of Basic Medical Sciences, Peking University Health Science Center Department of Human Anatomy, , Beijing 100191 ,","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Human Anatomy, Histology and Embryology, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086919232","display_name":"Minghao Du","orcid":"https://orcid.org/0000-0002-7478-5539"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Minghao Du","raw_affiliation_strings":["School of Basic Medical Sciences, Peking University Health Science Center Department of Microbiology & Infectious Disease Center, , Beijing 100191 ,","Department of Microbiology & Infectious Disease Center, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Peking University Health Science Center Department of Microbiology & Infectious Disease Center, , Beijing 100191 ,","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Microbiology & Infectious Disease Center, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083924807","display_name":"Ence Yang","orcid":"https://orcid.org/0000-0002-9526-2737"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ence Yang","raw_affiliation_strings":["School of Basic Medical Sciences, Peking University Health Science Center Department of Medical Bioinformatics, , Beijing 100191 ,","School of Basic Medical Sciences, Peking University Health Science Center Department of Microbiology & Infectious Disease Center, , Beijing 100191 ,","Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 009, China"],"raw_orcid":"https://orcid.org/0000-0002-9526-2737","affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Peking University Health Science Center Department of Medical Bioinformatics, , Beijing 100191 ,","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"School of Basic Medical Sciences, Peking University Health Science Center Department of Microbiology & Infectious Disease Center, , Beijing 100191 ,","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 009, China","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5083924807","https://openalex.org/A5086919232"],"corresponding_institution_ids":["https://openalex.org/I20231570"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00104133,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2026","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9593999981880188,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9593999981880188,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9513999819755554,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.9172838926315308},{"id":"https://openalex.org/keywords/element","display_name":"Element (criminal law)","score":0.5158076286315918},{"id":"https://openalex.org/keywords/dna-transposable-elements","display_name":"DNA Transposable Elements","score":0.4675373435020447},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4241427183151245},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41581082344055176},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4093720614910126},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3983694314956665},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.30143213272094727},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23087811470031738},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.19569283723831177},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.16439154744148254}],"concepts":[{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.9172838926315308},{"id":"https://openalex.org/C200288055","wikidata":"https://www.wikidata.org/wiki/Q2621792","display_name":"Element (criminal law)","level":2,"score":0.5158076286315918},{"id":"https://openalex.org/C2910146623","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"DNA Transposable Elements","level":5,"score":0.4675373435020447},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4241427183151245},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41581082344055176},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4093720614910126},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3983694314956665},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.30143213272094727},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23087811470031738},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.19569283723831177},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.16439154744148254},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000096104","descriptor_name":"Biocuration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baag025","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baag025","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"doi:10.1101/2025.05.19.654796","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2025.05.19.654796","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2025/05/23/2025.05.19.654796.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmid:42153345","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42153345","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13184619","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13184619/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baag025","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baag025","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1889879445","display_name":null,"funder_award_id":"32400534","funder_id":"https://openalex.org/F4320331088","funder_display_name":"Natural Science Foundation for Young Scientists of Shanxi Province"},{"id":"https://openalex.org/G5452469784","display_name":null,"funder_award_id":"2024M760136","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320331088","display_name":"Natural Science Foundation for Young Scientists of Shanxi Province","ror":null},{"id":"https://openalex.org/F4320335581","display_name":"Young Scientists Fund","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1569560557","https://openalex.org/W1967134681","https://openalex.org/W1998390679","https://openalex.org/W2001671544","https://openalex.org/W2025183726","https://openalex.org/W2035120673","https://openalex.org/W2091279754","https://openalex.org/W2095595375","https://openalex.org/W2096465161","https://openalex.org/W2102619694","https://openalex.org/W2128505445","https://openalex.org/W2142678478","https://openalex.org/W2169456326","https://openalex.org/W2172557341","https://openalex.org/W2259938310","https://openalex.org/W2341539131","https://openalex.org/W2556763090","https://openalex.org/W2557985989","https://openalex.org/W2566227895","https://openalex.org/W2578051997","https://openalex.org/W2615786037","https://openalex.org/W2761275051","https://openalex.org/W2903083041","https://openalex.org/W2909194804","https://openalex.org/W2922281162","https://openalex.org/W2929679098","https://openalex.org/W2948558658","https://openalex.org/W2962088385","https://openalex.org/W2989996227","https://openalex.org/W2995527562","https://openalex.org/W2995845102","https://openalex.org/W3005218670","https://openalex.org/W3011428862","https://openalex.org/W3036325257","https://openalex.org/W3087081867","https://openalex.org/W3089090757","https://openalex.org/W3119908887","https://openalex.org/W3144073050","https://openalex.org/W3153833944","https://openalex.org/W3179136473","https://openalex.org/W3203588026","https://openalex.org/W3205408718","https://openalex.org/W4285588679","https://openalex.org/W4311460970","https://openalex.org/W4319069400","https://openalex.org/W4365137750","https://openalex.org/W4376642835","https://openalex.org/W4378781148","https://openalex.org/W4386624610","https://openalex.org/W4387220377","https://openalex.org/W4388622755","https://openalex.org/W4390911073","https://openalex.org/W4395447546","https://openalex.org/W4400091346","https://openalex.org/W4402404042","https://openalex.org/W4403203832"],"related_works":["https://openalex.org/W1831405499","https://openalex.org/W4402803661","https://openalex.org/W2131380093","https://openalex.org/W2005686029","https://openalex.org/W4385457713","https://openalex.org/W2164152191","https://openalex.org/W2026307780","https://openalex.org/W4402805749","https://openalex.org/W4402804424","https://openalex.org/W4385457838"],"abstract_inverted_index":{"Transposable":[0],"elements":[1],"(TEs)":[2],"are":[3],"abundant":[4],"and":[5,35,73,94,120,142,156],"play":[6],"a":[7,51,69,107],"crucial":[8],"regulatory":[9],"role":[10],"in":[11,61,140,153],"the":[12,98,147],"human":[13],"genome.":[14],"Functioning":[15],"as":[16,43],"alternative":[17],"promoters,":[18],"TEs":[19],"can":[20],"be":[21],"reactivated":[22],"to":[23,115],"produce":[24],"TE-initiated":[25,29,59,77,123,151],"transcripts.":[26],"In":[27],"cancer,":[28],"transcription":[30,60],"may":[31],"upregulate":[32],"oncogene":[33],"expression":[34],"generate":[36],"novel":[37,127],"tumour-specific":[38],"antigens,":[39],"which":[40],"could":[41],"serve":[42],"potential":[44,148],"targets":[45],"for":[46,122],"immunotherapy.":[47],"However,":[48],"there":[49],"remains":[50],"lack":[52],"of":[53,132,150],"comprehensive":[54],"databases":[55],"that":[56,110],"systematically":[57],"investigate":[58],"cancer.":[62],"To":[63],"address":[64],"this":[65],"gap,":[66],"we":[67,103],"developed":[68],"deep":[70],"learning-based":[71],"method":[72],"identified":[74],"38":[75],"995":[76],"transcripts":[78,152],"across":[79],"33":[80],"cancer":[81,154],"types":[82],"from":[83],"The":[84,130],"Cancer":[85],"Genome":[86],"Atlas.":[87],"Among":[88],"these,":[89],"6203":[90],"were":[91],"tumour-specifically":[92],"expressed":[93],"strongly":[95],"associated":[96],"with":[97,113],"tumourigenesis.":[99],"Using":[100],"these":[101],"annotations,":[102],"created":[104],"TEITbase":[105,133],"(http://teitbase.medbioinfo.org/),":[106],"user-friendly":[108],"database":[109],"provides":[111,134],"researchers":[112],"tools":[114],"conduct":[116],"various":[117],"downstream":[118],"analyses":[119],"investigations":[121],"transcripts,":[124],"including":[125],"546":[126],"onco-exaptation":[128],"events.":[129],"establishment":[131],"new":[135],"insights":[136],"into":[137,146],"transcriptional":[138],"reprogramming":[139],"cancers":[141],"enables":[143],"further":[144],"investigation":[145],"roles":[149],"diagnostics":[155],"therapeutic":[157],"strategies.":[158]},"counts_by_year":[],"updated_date":"2026-07-17T09:13:05.818461","created_date":"2025-10-10T00:00:00"}
