{"id":"https://openalex.org/W7128686814","doi":"https://doi.org/10.1093/database/baag006","title":"neomerDB: a comprehensive database of neomer biomarkers in cancer","display_name":"neomerDB: a comprehensive database of neomer biomarkers in cancer","publication_year":2026,"publication_date":"2026-01-01","ids":{"openalex":"https://openalex.org/W7128686814","doi":"https://doi.org/10.1093/database/baag006","pmid":"https://pubmed.ncbi.nlm.nih.gov/41676903"},"language":"en","primary_location":{"id":"doi:10.1093/database/baag006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baag006","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baag006","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114335992","display_name":"Kimonas Provatas","orcid":"https://orcid.org/0009-0007-7526-0439"},"institutions":[{"id":"https://openalex.org/I12138139","display_name":"Austin College","ror":"https://ror.org/052k56z27","country_code":"US","type":"education","lineage":["https://openalex.org/I12138139"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kimonas Provatas","raw_affiliation_strings":["Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Pediatric Research Institute , 1400 Barbara Jordan Boulevard, Austin, TX 78723 ,","The Pennsylvania State University College of Medicine Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, , 500 University Drive, Hershey, PA 17033 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Pediatric Research Institute , 1400 Barbara Jordan Boulevard, Austin, TX 78723 ,","institution_ids":["https://openalex.org/I12138139"]},{"raw_affiliation_string":"The Pennsylvania State University College of Medicine Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, , 500 University Drive, Hershey, PA 17033 ,","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004581885","display_name":"Candace S. Y. Chan","orcid":"https://orcid.org/0000-0001-9667-7996"},"institutions":[{"id":"https://openalex.org/I12138139","display_name":"Austin College","ror":"https://ror.org/052k56z27","country_code":"US","type":"education","lineage":["https://openalex.org/I12138139"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Candace S Y Chan","raw_affiliation_strings":["Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Pediatric Research Institute , 1400 Barbara Jordan Boulevard, Austin, TX 78723 ,","The Pennsylvania State University College of Medicine Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, , 500 University Drive, Hershey, PA 17033 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Pediatric Research Institute , 1400 Barbara Jordan Boulevard, Austin, TX 78723 ,","institution_ids":["https://openalex.org/I12138139"]},{"raw_affiliation_string":"The Pennsylvania State University College of Medicine Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, , 500 University Drive, Hershey, PA 17033 ,","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5125687461","display_name":"Ioannis Kerasiotis","orcid":null},"institutions":[{"id":"https://openalex.org/I12138139","display_name":"Austin College","ror":"https://ror.org/052k56z27","country_code":"US","type":"education","lineage":["https://openalex.org/I12138139"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ioannis Kerasiotis","raw_affiliation_strings":["Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Pediatric Research Institute , 1400 Barbara Jordan Boulevard, Austin, TX 78723 ,","The Pennsylvania State University College of Medicine Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, , 500 University Drive, Hershey, PA 17033 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Pediatric Research Institute , 1400 Barbara Jordan Boulevard, Austin, TX 78723 ,","institution_ids":["https://openalex.org/I12138139"]},{"raw_affiliation_string":"The Pennsylvania State University College of Medicine Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, , 500 University Drive, Hershey, PA 17033 ,","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094230408","display_name":"Eleftherios Bochalis","orcid":"https://orcid.org/0009-0008-4988-6427"},"institutions":[{"id":"https://openalex.org/I12138139","display_name":"Austin College","ror":"https://ror.org/052k56z27","country_code":"US","type":"education","lineage":["https://openalex.org/I12138139"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eleftherios Bochalis","raw_affiliation_strings":["Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Pediatric Research Institute , 1400 Barbara Jordan Boulevard, Austin, TX 78723 ,","The Pennsylvania State University College of Medicine Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, , 500 University Drive, Hershey, PA 17033 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Pediatric Research Institute , 1400 Barbara Jordan Boulevard, Austin, TX 78723 ,","institution_ids":["https://openalex.org/I12138139"]},{"raw_affiliation_string":"The Pennsylvania State University College of Medicine Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, , 500 University Drive, Hershey, PA 17033 ,","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112368953","display_name":"Akshatha Nayak","orcid":null},"institutions":[{"id":"https://openalex.org/I12138139","display_name":"Austin College","ror":"https://ror.org/052k56z27","country_code":"US","type":"education","lineage":["https://openalex.org/I12138139"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Akshatha Nayak","raw_affiliation_strings":["Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Pediatric Research Institute , 1400 Barbara Jordan Boulevard, Austin, TX 78723 ,","The Pennsylvania State University College of Medicine Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, , 500 University Drive, Hershey, PA 17033 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Pediatric Research Institute , 1400 Barbara Jordan Boulevard, Austin, TX 78723 ,","institution_ids":["https://openalex.org/I12138139"]},{"raw_affiliation_string":"The Pennsylvania State University College of Medicine Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, , 500 University Drive, Hershey, PA 17033 ,","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021546007","display_name":"Brad E. Zacharia","orcid":"https://orcid.org/0000-0002-2078-7635"},"institutions":[{"id":"https://openalex.org/I82783531","display_name":"Penn State Milton S. Hershey Medical Center","ror":"https://ror.org/01h22ap11","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I82783531"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brad E Zacharia","raw_affiliation_strings":["Penn State Milton S. Hershey Medical Center Department of Neurosurgery, , 500 University Drive, Hershey, PA 17033 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Penn State Milton S. Hershey Medical Center Department of Neurosurgery, , 500 University Drive, Hershey, PA 17033 ,","institution_ids":["https://openalex.org/I82783531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088991393","display_name":"Georgios A. Pavlopoulos","orcid":"https://orcid.org/0000-0002-4577-8276"},"institutions":[{"id":"https://openalex.org/I4210113480","display_name":"Mohamed bin Zayed University of Artificial Intelligence","ror":"https://ror.org/0258gkt32","country_code":"AE","type":"education","lineage":["https://openalex.org/I4210113480"]},{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["AE","GR"],"is_corresponding":false,"raw_author_name":"Georgios A Pavlopoulos","raw_affiliation_strings":["Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Street, 16672, Vari, Athens ,","Mohamed bin Zayed University of Artificial Intelligence (MBZUAI) Department of Computational Biology, , Masdar City, Abu Dhabi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , 34 Fleming Street, 16672, Vari, Athens ,","institution_ids":["https://openalex.org/I6820528"]},{"raw_affiliation_string":"Mohamed bin Zayed University of Artificial Intelligence (MBZUAI) Department of Computational Biology, , Masdar City, Abu Dhabi ,","institution_ids":["https://openalex.org/I4210113480"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100751018","display_name":"Wei Li","orcid":"https://orcid.org/0000-0002-5257-7130"},"institutions":[{"id":"https://openalex.org/I82783531","display_name":"Penn State Milton S. Hershey Medical Center","ror":"https://ror.org/01h22ap11","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I82783531"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Li","raw_affiliation_strings":["Penn State College of Medicine Division of Hematology and Oncology, Department of Pediatrics, , 500 University Drive, Hershey, PA 17033 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Penn State College of Medicine Division of Hematology and Oncology, Department of Pediatrics, , 500 University Drive, Hershey, PA 17033 ,","institution_ids":["https://openalex.org/I82783531"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5125773435","display_name":"Ilias Georgakopoulos-Soares","orcid":null},"institutions":[{"id":"https://openalex.org/I12138139","display_name":"Austin College","ror":"https://ror.org/052k56z27","country_code":"US","type":"education","lineage":["https://openalex.org/I12138139"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ilias Georgakopoulos-Soares","raw_affiliation_strings":["Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Pediatric Research Institute , 1400 Barbara Jordan Boulevard, Austin, TX 78723 ,","The Pennsylvania State University College of Medicine Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, , 500 University Drive, Hershey, PA 17033 ,"],"raw_orcid":"https://orcid.org/0000-0003-3641-1488","affiliations":[{"raw_affiliation_string":"Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Pediatric Research Institute , 1400 Barbara Jordan Boulevard, Austin, TX 78723 ,","institution_ids":["https://openalex.org/I12138139"]},{"raw_affiliation_string":"The Pennsylvania State University College of Medicine Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, , 500 University Drive, Hershey, PA 17033 ,","institution_ids":["https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5114335992"],"corresponding_institution_ids":["https://openalex.org/I12138139","https://openalex.org/I130769515"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.20960279,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2026","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.5728999972343445,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.5728999972343445,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.04360000044107437,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.03750000149011612,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/exome-sequencing","display_name":"Exome sequencing","score":0.6862000226974487},{"id":"https://openalex.org/keywords/exome","display_name":"Exome","score":0.6674000024795532},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.6351000070571899},{"id":"https://openalex.org/keywords/germline","display_name":"Germline","score":0.597000002861023},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4982999861240387},{"id":"https://openalex.org/keywords/germline-mutation","display_name":"Germline mutation","score":0.4941999912261963},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4611000120639801},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4577000141143799},{"id":"https://openalex.org/keywords/reference-database","display_name":"Reference database","score":0.43869999051094055}],"concepts":[{"id":"https://openalex.org/C16671776","wikidata":"https://www.wikidata.org/wiki/Q5420592","display_name":"Exome sequencing","level":4,"score":0.6862000226974487},{"id":"https://openalex.org/C10590036","wikidata":"https://www.wikidata.org/wiki/Q417664","display_name":"Exome","level":5,"score":0.6674000024795532},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.6351000070571899},{"id":"https://openalex.org/C109825262","wikidata":"https://www.wikidata.org/wiki/Q1139164","display_name":"Germline","level":3,"score":0.597000002861023},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4982999861240387},{"id":"https://openalex.org/C13514818","wikidata":"https://www.wikidata.org/wiki/Q5552256","display_name":"Germline mutation","level":4,"score":0.4941999912261963},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49129998683929443},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4611000120639801},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4577000141143799},{"id":"https://openalex.org/C2984717058","wikidata":"https://www.wikidata.org/wiki/Q1789476","display_name":"Reference database","level":2,"score":0.43869999051094055},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.3529999852180481},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.34860000014305115},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3474999964237213},{"id":"https://openalex.org/C97425143","wikidata":"https://www.wikidata.org/wiki/Q164786","display_name":"1000 Genomes Project","level":5,"score":0.3398999869823456},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3382999897003174},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33799999952316284},{"id":"https://openalex.org/C58471807","wikidata":"https://www.wikidata.org/wiki/Q327120","display_name":"Receiver operating characteristic","level":2,"score":0.33230000734329224},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3296999931335449},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.3273000121116638},{"id":"https://openalex.org/C205270622","wikidata":"https://www.wikidata.org/wiki/Q17082639","display_name":"Cancer genome sequencing","level":5,"score":0.3215000033378601},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.320499986410141},{"id":"https://openalex.org/C134305767","wikidata":"https://www.wikidata.org/wiki/Q725508","display_name":"Somatic cell","level":3,"score":0.3107999861240387},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.310699999332428},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.2946999967098236},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2874999940395355},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.28110000491142273},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.26660001277923584},{"id":"https://openalex.org/C2776194525","wikidata":"https://www.wikidata.org/wiki/Q282142","display_name":"Glioblastoma","level":2,"score":0.25279998779296875},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.25040000677108765}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baag006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baag006","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:41676903","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41676903","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:11702456","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12895195","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12895195","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12895195/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baag006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baag006","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2827220524","display_name":null,"funder_award_id":"28787-VIROMINE","funder_id":"https://openalex.org/F4320327859","funder_display_name":"Hellenic Foundation for Research and Innovation"},{"id":"https://openalex.org/G5280469631","display_name":null,"funder_award_id":"23592\u2013EMISSION","funder_id":"https://openalex.org/F4320327859","funder_display_name":"Hellenic Foundation for Research and Innovation"}],"funders":[{"id":"https://openalex.org/F4320310620","display_name":"University of Texas at Austin","ror":"https://ror.org/00hj54h04"},{"id":"https://openalex.org/F4320327859","display_name":"Hellenic Foundation for Research and Innovation","ror":null},{"id":"https://openalex.org/F4320337703","display_name":"Penn State Hershey Cancer Institute","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W2096128575","https://openalex.org/W2583363792","https://openalex.org/W2794804602","https://openalex.org/W3006500278","https://openalex.org/W3029661147","https://openalex.org/W3141884635","https://openalex.org/W3193943505","https://openalex.org/W3194757681","https://openalex.org/W4220903131","https://openalex.org/W4320033918","https://openalex.org/W4391757058","https://openalex.org/W4391818889","https://openalex.org/W4395112882","https://openalex.org/W4401169410","https://openalex.org/W4403736603","https://openalex.org/W4406778273","https://openalex.org/W4408157156","https://openalex.org/W4409149030","https://openalex.org/W4410028126"],"related_works":[],"abstract_inverted_index":{"The":[0],"development":[1],"of":[2,40,63,88,109,170,176],"biomarkers":[3],"for":[4,193],"population":[5],"screening,":[6],"early":[7],"cancer":[8,50,66,93],"detection,":[9],"monitoring,":[10],"and":[11,21,35,68,77,84,95,104,119,156,172,190],"recurrence":[12],"surveillance":[13],"offers":[14],"substantial":[15],"potential":[16],"to":[17,46,125,143],"improve":[18],"patient":[19],"outcomes":[20],"save":[22],"lives.":[23],"Nullomers":[24],"are":[25,29,37],"short":[26],"k-mers":[27],"that":[28,42,59,121,138,183],"absent":[30],"from":[31,111,114,146],"a":[32,57,61,134,160,173,180],"human":[33],"genome,":[34],"neomers":[36,64,89,120,139],"the":[38,86,129,167],"subset":[39],"nullomers":[41,118],"emerge":[43],"recurrently":[44],"due":[45,124],"somatic":[47],"mutations":[48],"during":[49],"development.":[51],"Here,":[52],"we":[53,116,132],"have":[54],"developed":[55],"neomerDB,":[56],"database":[58,182],"encompasses":[60],"catalogue":[62],"across":[65],"types":[67],"organs.":[69],"We":[70,97],"examined":[71],"10":[72],"000":[73],"whole":[74,79,102,107],"exome":[75],"sequencing":[76,81],"2658":[78],"genome":[80],"tumour-matched":[82],"samples":[83,149],"identified":[85],"set":[87],"associated":[90],"with":[91],"each":[92],"type":[94],"organ.":[96],"also":[98],"analysed":[99],"76":[100],"215":[101],"genomes":[103],"730":[105],"947":[106],"exomes":[108],"individuals":[110],"diverse":[112],"ancestries,":[113],"which":[115],"removed":[117],"can":[122,140],"arise":[123],"germline":[126],"variants":[127],"in":[128],"population.":[130],"Finally,":[131],"conducted":[133],"case":[135],"study":[136],"demonstrating":[137],"be":[141],"utilized":[142],"detect":[144],"glioblastoma":[145],"liquid":[147],"biopsy":[148],"(n":[150],"=":[151],"38),":[152],"utilizing":[153],"cell-free":[154,157],"DNA":[155],"RNA,":[158],"achieving":[159],"Receiver":[161],"Operating":[162],"Characteristic":[163],"-":[164],"Area":[165],"Under":[166],"Curve":[168],"score":[169,175],"0.98":[171],"precision-recall":[174],"0.99.":[177],"neomerDB":[178,196],"is":[179,197],"user-friendly":[181],"enables":[184],"advanced":[185],"searches,":[186],"provides":[187],"interactive":[188],"visualizations,":[189],"download":[191],"options":[192],"neomer":[194],"biomarkers.":[195],"publicly":[198],"available":[199],"at":[200],"https://neomerDB.com/.":[201]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2026-02-13T00:00:00"}
