{"id":"https://openalex.org/W7124288306","doi":"https://doi.org/10.1093/database/baaf088","title":"SynVectorDB: embedding-based retrieval system for synthetic biology parts","display_name":"SynVectorDB: embedding-based retrieval system for synthetic biology parts","publication_year":2025,"publication_date":"2025-12-15","ids":{"openalex":"https://openalex.org/W7124288306","doi":"https://doi.org/10.1093/database/baaf088","pmid":"https://pubmed.ncbi.nlm.nih.gov/41537189"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaf088","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf088","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baaf088","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5123074602","display_name":"Hao Li","orcid":null},"institutions":[{"id":"https://openalex.org/I4210091343","display_name":"Shanghai Stomatological Hospital","ror":"https://ror.org/00g56wy16","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210091343"]},{"id":"https://openalex.org/I4210097066","display_name":"Shanghai Ninth People's Hospital","ror":"https://ror.org/010826a91","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210097066"]},{"id":"https://openalex.org/I4210126592","display_name":"National Clinical Research","ror":"https://ror.org/03ddkvp86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210126592"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Hao Li","raw_affiliation_strings":["Department of Endodontics, Shanghai Ninth People\u2019s Hospital, Shanghai Jiao Tong University School of Medicine, College of Stomatology, Shanghai Jiao Tong University , Shanghai, 200011 ,","National Center for Stomatology, National Clinical Research Center for Oral Diseases, Shanghai Key Laboratory of Stomatology , Shanghai, 200025 ,"],"affiliations":[{"raw_affiliation_string":"Department of Endodontics, Shanghai Ninth People\u2019s Hospital, Shanghai Jiao Tong University School of Medicine, College of Stomatology, Shanghai Jiao Tong University , Shanghai, 200011 ,","institution_ids":["https://openalex.org/I4210097066"]},{"raw_affiliation_string":"National Center for Stomatology, National Clinical Research Center for Oral Diseases, Shanghai Key Laboratory of Stomatology , Shanghai, 200025 ,","institution_ids":["https://openalex.org/I4210091343","https://openalex.org/I4210126592"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123097222","display_name":"Jiani Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I4210087641","display_name":"Beijing VDJBio (China)","ror":"https://ror.org/001gbdr73","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210087641"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Jiani Hu","raw_affiliation_strings":["Research and Development Department, Beijing Xunzhu Biotechnology Co. Ltd. , Beijing, 100080 ,","School of Chemistry and Molecular Biosciences, The University of Queensland , Brisbane, QLD, 4072 ,"],"affiliations":[{"raw_affiliation_string":"Research and Development Department, Beijing Xunzhu Biotechnology Co. Ltd. , Beijing, 100080 ,","institution_ids":["https://openalex.org/I4210087641"]},{"raw_affiliation_string":"School of Chemistry and Molecular Biosciences, The University of Queensland , Brisbane, QLD, 4072 ,","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123085258","display_name":"Jie Song","orcid":null},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I4210087641","display_name":"Beijing VDJBio (China)","ror":"https://ror.org/001gbdr73","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210087641"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Jie Song","raw_affiliation_strings":["Research and Development Department, Beijing Xunzhu Biotechnology Co. Ltd. , Beijing, 100080 ,","School of Chemistry and Molecular Biosciences, The University of Queensland , Brisbane, QLD, 4072 ,"],"affiliations":[{"raw_affiliation_string":"Research and Development Department, Beijing Xunzhu Biotechnology Co. Ltd. , Beijing, 100080 ,","institution_ids":["https://openalex.org/I4210087641"]},{"raw_affiliation_string":"School of Chemistry and Molecular Biosciences, The University of Queensland , Brisbane, QLD, 4072 ,","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112023727","display_name":"Wenwu Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I4210091343","display_name":"Shanghai Stomatological Hospital","ror":"https://ror.org/00g56wy16","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210091343"]},{"id":"https://openalex.org/I4210097066","display_name":"Shanghai Ninth People's Hospital","ror":"https://ror.org/010826a91","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210097066"]},{"id":"https://openalex.org/I4210126592","display_name":"National Clinical Research","ror":"https://ror.org/03ddkvp86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210126592"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Wei Zhou","raw_affiliation_strings":["Department of Endodontics, Shanghai Ninth People\u2019s Hospital, Shanghai Jiao Tong University School of Medicine, College of Stomatology, Shanghai Jiao Tong University , Shanghai, 200011 ,","National Center for Stomatology, National Clinical Research Center for Oral Diseases, Shanghai Key Laboratory of Stomatology , Shanghai, 200025 ,"],"affiliations":[{"raw_affiliation_string":"Department of Endodontics, Shanghai Ninth People\u2019s Hospital, Shanghai Jiao Tong University School of Medicine, College of Stomatology, Shanghai Jiao Tong University , Shanghai, 200011 ,","institution_ids":["https://openalex.org/I4210097066"]},{"raw_affiliation_string":"National Center for Stomatology, National Clinical Research Center for Oral Diseases, Shanghai Key Laboratory of Stomatology , Shanghai, 200025 ,","institution_ids":["https://openalex.org/I4210091343","https://openalex.org/I4210126592"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5123074602"],"corresponding_institution_ids":["https://openalex.org/I4210091343","https://openalex.org/I4210097066","https://openalex.org/I4210126592"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.64010932,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2026","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.37119999527931213,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.37119999527931213,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.16869999468326569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.07649999856948853,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6247000098228455},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5566999912261963},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.5224000215530396},{"id":"https://openalex.org/keywords/comparability","display_name":"Comparability","score":0.4546000063419342},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4259999990463257},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.4205000102519989},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.35440000891685486},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.352400004863739},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.34439998865127563},{"id":"https://openalex.org/keywords/asynchronous-communication","display_name":"Asynchronous communication","score":0.33799999952316284}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8309000134468079},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6247000098228455},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5566999912261963},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.5224000215530396},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.46869999170303345},{"id":"https://openalex.org/C197947376","wikidata":"https://www.wikidata.org/wiki/Q5155608","display_name":"Comparability","level":2,"score":0.4546000063419342},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4259999990463257},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4205000102519989},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.35440000891685486},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.352400004863739},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.34439998865127563},{"id":"https://openalex.org/C151319957","wikidata":"https://www.wikidata.org/wiki/Q752739","display_name":"Asynchronous communication","level":2,"score":0.33799999952316284},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3257000148296356},{"id":"https://openalex.org/C98025372","wikidata":"https://www.wikidata.org/wiki/Q477538","display_name":"Systems architecture","level":3,"score":0.32420000433921814},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.3160000145435333},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.31060001254081726},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.30489999055862427},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.3043000102043152},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.3028999865055084},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.30239999294281006},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.3018999993801117},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.30160000920295715},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.30140000581741333},{"id":"https://openalex.org/C19527686","wikidata":"https://www.wikidata.org/wiki/Q1665453","display_name":"System integration","level":2,"score":0.2953000068664551},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.2937000095844269},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.2915000021457672},{"id":"https://openalex.org/C180198813","wikidata":"https://www.wikidata.org/wiki/Q121182","display_name":"Information system","level":2,"score":0.29010000824928284},{"id":"https://openalex.org/C551230270","wikidata":"https://www.wikidata.org/wiki/Q4368942","display_name":"Data retrieval","level":2,"score":0.2879999876022339},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.28290000557899475},{"id":"https://openalex.org/C3102742","wikidata":"https://www.wikidata.org/wiki/Q6031177","display_name":"Information repository","level":3,"score":0.2775000035762787},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2775000035762787},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.2750000059604645},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.2671000063419342},{"id":"https://openalex.org/C33326189","wikidata":"https://www.wikidata.org/wiki/Q17092450","display_name":"Information integration","level":2,"score":0.2648000121116638},{"id":"https://openalex.org/C160713754","wikidata":"https://www.wikidata.org/wiki/Q1389965","display_name":"Maintainability","level":2,"score":0.2637999951839447},{"id":"https://openalex.org/C110903229","wikidata":"https://www.wikidata.org/wiki/Q7449064","display_name":"Semantic integration","level":4,"score":0.26330000162124634},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.2603999972343445},{"id":"https://openalex.org/C47487241","wikidata":"https://www.wikidata.org/wiki/Q5227230","display_name":"Data access","level":2,"score":0.25189998745918274},{"id":"https://openalex.org/C161156560","wikidata":"https://www.wikidata.org/wiki/Q1638872","display_name":"Document retrieval","level":2,"score":0.2506999969482422}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baaf088","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf088","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:41537189","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41537189","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12805114","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12805114/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12805114/pdf/baaf088.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaf088","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf088","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5544082522392273,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3439222558","display_name":null,"funder_award_id":"82100990","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3767725915","display_name":null,"funder_award_id":"KQYJXK2020","funder_id":"https://openalex.org/F4320322999","funder_display_name":"Shanghai Jiao Tong University"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6809183074","display_name":null,"funder_award_id":"Project No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G837167159","display_name":null,"funder_award_id":"KQYJXK2020","funder_id":"https://openalex.org/F4320335305","funder_display_name":"School of Medicine, Shanghai Jiao Tong University"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322999","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04"},{"id":"https://openalex.org/F4320335305","display_name":"School of Medicine, Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Synthetic":[0],"biology":[1],"part":[2,165],"discovery":[3],"faces":[4],"significant":[5],"challenges":[6],"due":[7],"to":[8,114],"inconsistent":[9],"data":[10,35,129],"organization":[11,166],"and":[12,37,71,94,131,151,167,183,187],"limited":[13],"semantic":[14,39,116],"search":[15,132],"capabilities":[16],"across":[17,134],"existing":[18],"repositories.":[19],"We":[20,74],"developed":[21],"SynVectorDB,":[22],"an":[23],"embedding-based":[24],"retrieval":[25,123],"system":[26,81,155],"that":[27,60,119],"addresses":[28],"these":[29],"limitations":[30],"through":[31,68,144],"methodological":[32],"innovations":[33],"in":[34,62,174],"integration":[36,190],"AI-driven":[38],"search.":[40],"Our":[41],"approach":[42],"integrates":[43],"19":[44],"850":[45],"biological":[46,164],"parts":[47,64,83],"from":[48],"multiple":[49,175],"sources":[50],"(Addgene,":[51],"iGEM":[52],"Registry,":[53],"laboratory":[54],"collections),":[55],"implementing":[56],"systematic":[57],"curation":[58,126],"protocols":[59],"resulted":[61],"7656":[63],"achieving":[65],"verified":[66],"status":[67],"literature-based":[69],"validation":[70],"reliability":[72],"assessment.":[73],"introduce":[75],"a":[76,109],"novel":[77],"three-level":[78],"hierarchical":[79],"classification":[80],"organizing":[82],"into":[84],"functionally":[85],"coherent":[86],"categories":[87],"(DNA":[88],"Elements,":[89,91],"RNA":[90],"Coding":[92],"Sequences,":[93],"Application":[95],"Constructs)":[96],"with":[97],"detailed":[98],"subcategorization.":[99],"The":[100,137,154],"core":[101],"technical":[102],"contribution":[103],"employs":[104],"BGE-M3":[105],"multilingual":[106],"embeddings":[107],"within":[108],"scalable":[110],"vector":[111],"database":[112],"architecture":[113,140],"enable":[115],"similarity":[117],"matching":[118],"significantly":[120],"outperforms":[121],"keyword-based":[122],"methods.":[124],"Standardized":[125],"workflows":[127],"enhance":[128],"comparability":[130],"accuracy":[133],"heterogeneous":[135],"sources.":[136],"dual":[138],"deployment":[139,152,176],"ensures":[141],"high":[142],"performance":[143],"cloud":[145],"services":[146],"while":[147,159],"maintaining":[148],"open-source":[149],"accessibility":[150],"flexibility.":[153],"maintains":[156],"SBOL3":[157],"compatibility":[158],"providing":[160],"innovative":[161],"solutions":[162],"for":[163,191],"retrieval.":[168],"Database":[169],"URL:":[170],"SynVectorDB":[171],"is":[172],"available":[173],"modes:":[177],"web":[178],"interface":[179],"(https://svdb.sjtu.bio),":[180],"local":[181],"installation":[182],"source":[184],"code":[185],"(https://github.com/AilurusBio/synbio-parts-db),":[186],"MCP":[188],"server":[189],"AI":[192],"assistants":[193],"(https://www.npmjs.com/package/synvectordb).":[194]},"counts_by_year":[],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2026-01-16T00:00:00"}
