{"id":"https://openalex.org/W4415696199","doi":"https://doi.org/10.1093/database/baaf068","title":"SEND: a suite of tools for the easy sharing of linked biological data","display_name":"SEND: a suite of tools for the easy sharing of linked biological data","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4415696199","doi":"https://doi.org/10.1093/database/baaf068","pmid":"https://pubmed.ncbi.nlm.nih.gov/41158062"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaf068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf068","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baaf068","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041859799","display_name":"Rodolfo S. Allendes Osorio","orcid":"https://orcid.org/0000-0002-9627-9338"},"institutions":[{"id":"https://openalex.org/I4210086383","display_name":"National Institute of Biomedical Innovation, Health and Nutrition","ror":"https://ror.org/001rkbe13","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210086383"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Rodolfo S Allendes\u00a0Osorio","raw_affiliation_strings":["AI Center for Health and Biomedical Research (ArCHER), National Institutes of Biomedical Innovation, Health and Nutrition , 3-17 Senrioka-Shinmachi, Settsu-shi, Osaka, 566-0002 ,","Premium Research Institute for Human Metaverse Medicine (WPI-PRIMe), The University of Osaka , 2-2 Yamadaoka, Suita-shi, Osaka 565-0871 ,","Premium Research Institute for Human Metaverse Medicine (WPI-PRIMe), The University of Osaka, 2-2 Yamadaoka, Suita-shi, Osaka 565-0871, Japan"],"raw_orcid":"https://orcid.org/0000-0002-9627-9338","affiliations":[{"raw_affiliation_string":"AI Center for Health and Biomedical Research (ArCHER), National Institutes of Biomedical Innovation, Health and Nutrition , 3-17 Senrioka-Shinmachi, Settsu-shi, Osaka, 566-0002 ,","institution_ids":["https://openalex.org/I4210086383"]},{"raw_affiliation_string":"Premium Research Institute for Human Metaverse Medicine (WPI-PRIMe), The University of Osaka , 2-2 Yamadaoka, Suita-shi, Osaka 565-0871 ,","institution_ids":["https://openalex.org/I98285908"]},{"raw_affiliation_string":"Premium Research Institute for Human Metaverse Medicine (WPI-PRIMe), The University of Osaka, 2-2 Yamadaoka, Suita-shi, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034268536","display_name":"Yi-An Chen","orcid":"https://orcid.org/0000-0003-4936-8060"},"institutions":[{"id":"https://openalex.org/I4210086383","display_name":"National Institute of Biomedical Innovation, Health and Nutrition","ror":"https://ror.org/001rkbe13","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210086383"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yi-An Chen","raw_affiliation_strings":["AI Center for Health and Biomedical Research (ArCHER), National Institutes of Biomedical Innovation, Health and Nutrition , 3-17 Senrioka-Shinmachi, Settsu-shi, Osaka, 566-0002 ,"],"raw_orcid":"https://orcid.org/0000-0003-4936-8060","affiliations":[{"raw_affiliation_string":"AI Center for Health and Biomedical Research (ArCHER), National Institutes of Biomedical Innovation, Health and Nutrition , 3-17 Senrioka-Shinmachi, Settsu-shi, Osaka, 566-0002 ,","institution_ids":["https://openalex.org/I4210086383"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061134485","display_name":"Kenji Mizuguchi","orcid":"https://orcid.org/0000-0003-3021-7078"},"institutions":[{"id":"https://openalex.org/I4210086383","display_name":"National Institute of Biomedical Innovation, Health and Nutrition","ror":"https://ror.org/001rkbe13","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210086383"]},{"id":"https://openalex.org/I4210152009","display_name":"Protein Research Foundation","ror":"https://ror.org/03yzv7g36","country_code":"JP","type":"other","lineage":["https://openalex.org/I4210152009"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Kenji Mizuguchi","raw_affiliation_strings":["AI Center for Health and Biomedical Research (ArCHER), National Institutes of Biomedical Innovation, Health and Nutrition , 3-17 Senrioka-Shinmachi, Settsu-shi, Osaka, 566-0002 ,","Institute for Protein Research , The University of Osaka, 3-2 Yamadaoka, Suita-shi, Osaka 565-0871 ,","Institute for Protein Research, The University of Osaka, 3-2 Yamadaoka, Suita-shi, Osaka 565-0871, Japan"],"raw_orcid":"https://orcid.org/0000-0003-3021-7078","affiliations":[{"raw_affiliation_string":"AI Center for Health and Biomedical Research (ArCHER), National Institutes of Biomedical Innovation, Health and Nutrition , 3-17 Senrioka-Shinmachi, Settsu-shi, Osaka, 566-0002 ,","institution_ids":["https://openalex.org/I4210086383"]},{"raw_affiliation_string":"Institute for Protein Research , The University of Osaka, 3-2 Yamadaoka, Suita-shi, Osaka 565-0871 ,","institution_ids":["https://openalex.org/I4210152009","https://openalex.org/I98285908"]},{"raw_affiliation_string":"Institute for Protein Research, The University of Osaka, 3-2 Yamadaoka, Suita-shi, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I4210152009","https://openalex.org/I98285908"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5041859799","https://openalex.org/A5061134485"],"corresponding_institution_ids":["https://openalex.org/I4210086383","https://openalex.org/I4210152009","https://openalex.org/I98285908"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.18955504,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2025","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.25940001010894775,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.25940001010894775,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.15919999778270721,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.10029999911785126,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.9024999737739563},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5622000098228455},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.525600016117096},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5087000131607056},{"id":"https://openalex.org/keywords/linked-data","display_name":"Linked data","score":0.44449999928474426},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.42500001192092896},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.3993000090122223},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.3806000053882599}],"concepts":[{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.9024999737739563},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8327000141143799},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5949000120162964},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5622000098228455},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.525600016117096},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5087000131607056},{"id":"https://openalex.org/C69075417","wikidata":"https://www.wikidata.org/wiki/Q515701","display_name":"Linked data","level":3,"score":0.44449999928474426},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.42500001192092896},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3993000090122223},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.3806000053882599},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3727000057697296},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3716000020503998},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.2903999984264374},{"id":"https://openalex.org/C2983909278","wikidata":"https://www.wikidata.org/wiki/Q6368","display_name":"Web browser","level":3,"score":0.28679999709129333},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.28200000524520874},{"id":"https://openalex.org/C47487241","wikidata":"https://www.wikidata.org/wiki/Q5227230","display_name":"Data access","level":2,"score":0.2815999984741211},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.27880001068115234},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.271699994802475},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.2709999978542328},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.2705000042915344},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.2574999928474426}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baaf068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf068","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:41158062","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41158062","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:11375366","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12569301","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaf068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf068","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310760","display_name":"Uehara Memorial Foundation","ror":"https://ror.org/00gc20a07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1995808589","https://openalex.org/W2083362242","https://openalex.org/W2170648600","https://openalex.org/W2302501749","https://openalex.org/W3154324864","https://openalex.org/W4288066937","https://openalex.org/W4308616719","https://openalex.org/W4309506674"],"related_works":[],"abstract_inverted_index":{"Here,":[0],"we":[1],"introduce":[2],"SEND":[3,32],"(Share":[4],"Easily":[5],"bioiNformatics":[6],"Data),":[7],"a":[8,72],"suite":[9],"of":[10,42,46],"tools":[11],"that":[12],"allow":[13],"users":[14],"to":[15,67,77],"share":[16],"heterogeneous":[17],"and":[18,25],"linked":[19],"biological":[20],"data,":[21],"in":[22],"an":[23],"easy":[24],"highly":[26],"customizable":[27],"way.":[28],"The":[29],"code":[30],"for":[31,52],"is":[33],"freely":[34],"available":[35,51,70,81],"on":[36,71],"GitHub":[37],"(https://github.com/targetmine).":[38],"Also,":[39],"docker":[40],"images":[41],"all":[43],"different":[44],"components":[45],"the":[47,83],"system":[48],"are":[49],"directly":[50],"download":[53],"from":[54],"DockerHub":[55],"(https://hub.docker.com/search?q=rallendes;":[56],"contact:":[57],"Rodolfo":[58],"S.":[59],"Allendes":[60],"Osorio,":[61],"rodolfo.allendes.prime@osaka-u.ac.jp;":[62],"Kenji":[63],"Mizuguchi,":[64],"kenji@protein.osaka-u.ac.jp).":[65],"Links":[66],"additional":[68],"figures/data":[69],"web":[73,85],"site,":[74],"or":[75],"references":[76],"online-only":[78],"supplementary":[79],"data":[80],"at":[82],"journal's":[84],"site.":[86]},"counts_by_year":[],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-30T00:00:00"}
