{"id":"https://openalex.org/W4414509370","doi":"https://doi.org/10.1093/database/baaf065","title":"Gene Loss DB: a curated database for gene loss in mammals\u2014the cetacean collection","display_name":"Gene Loss DB: a curated database for gene loss in mammals\u2014the cetacean collection","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4414509370","doi":"https://doi.org/10.1093/database/baaf065","pmid":"https://pubmed.ncbi.nlm.nih.gov/40996709"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaf065","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf065","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf065/64394807/baaf065.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf065/64394807/baaf065.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077691540","display_name":"Gon\u00e7alo Espregueira Themudo","orcid":"https://orcid.org/0000-0002-5019-9439"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Gon\u00e7alo Espregueira Themudo","raw_affiliation_strings":["CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011934913","display_name":"Raquel Ruivo","orcid":"https://orcid.org/0000-0003-2412-8730"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Raquel Ruivo","raw_affiliation_strings":["CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008718238","display_name":"Ra\u00fal Valente","orcid":"https://orcid.org/0000-0001-8544-373X"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Raul Valente","raw_affiliation_strings":["CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117115969","display_name":"Nadia Artilheiro Artilheiro","orcid":null},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"N\u00e1dia Artilheiro","raw_affiliation_strings":["CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009884367","display_name":"Diogo Oliveira","orcid":"https://orcid.org/0000-0002-5803-185X"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Diogo Oliveira","raw_affiliation_strings":["CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","University of Porto Department of Biology, Faculty of Science, , Rua Campo Alegre s/n, 4169-007 Porto ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"University of Porto Department of Biology, Faculty of Science, , Rua Campo Alegre s/n, 4169-007 Porto ,","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070508577","display_name":"In\u00eas Amorim","orcid":"https://orcid.org/0000-0002-3649-8256"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"In\u00eas Amorim","raw_affiliation_strings":["CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","ICBAS, Abel Salazar Institute of Biomedical Sciences, University do Porto , Rua de Jorge Viterbo Ferreira 228, 4050-313 Porto ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"ICBAS, Abel Salazar Institute of Biomedical Sciences, University do Porto , Rua de Jorge Viterbo Ferreira 228, 4050-313 Porto ,","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101951931","display_name":"Bernardo Pinto","orcid":"https://orcid.org/0000-0003-4400-4815"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Bernardo Pinto","raw_affiliation_strings":["CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027950362","display_name":"L. Filipe C. Castro","orcid":"https://orcid.org/0000-0001-7697-386X"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Lu\u00eds Filipe C Castro","raw_affiliation_strings":["CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","University of Porto Department of Biology, Faculty of Science, , Rua Campo Alegre s/n, 4169-007 Porto ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"University of Porto Department of Biology, Faculty of Science, , Rua Campo Alegre s/n, 4169-007 Porto ,","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059053762","display_name":"S\u00e9rgio Ant\u00f4nio Fernandes","orcid":"https://orcid.org/0000-0003-3054-3316"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Sergio Fernandes","raw_affiliation_strings":["CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033535807","display_name":"M\u00f3nica Lopes\u2010Marques","orcid":"https://orcid.org/0000-0002-8597-4730"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"M\u00f3nica Lopes-Marques","raw_affiliation_strings":["CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","University of Porto Department of Biology, Faculty of Science, , Rua Campo Alegre s/n, 4169-007 Porto ,"],"raw_orcid":"https://orcid.org/0000-0002-8597-4730","affiliations":[{"raw_affiliation_string":"CIIMAR/CIMAR LA, Interdisciplinary Centre of Marine and Environmental Research, University of Porto , Terminal de Cruzeiros do Porto de Leix\u00f5es, Avenida General Norton de Matos, S/N 4450-208 Matosinhos ,","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"University of Porto Department of Biology, Faculty of Science, , Rua Campo Alegre s/n, 4169-007 Porto ,","institution_ids":["https://openalex.org/I182534213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I182534213"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.19392745,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2025","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6103000044822693},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.5910999774932861},{"id":"https://openalex.org/keywords/loss-function","display_name":"Loss function","score":0.5800999999046326},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.47699999809265137},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4397999942302704},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.43149998784065247},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.40070000290870667},{"id":"https://openalex.org/keywords/gene-family","display_name":"Gene family","score":0.38019999861717224}],"concepts":[{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.7178999781608582},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6147000193595886},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6103000044822693},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.5910999774932861},{"id":"https://openalex.org/C105951970","wikidata":"https://www.wikidata.org/wiki/Q1036748","display_name":"Loss function","level":4,"score":0.5800999999046326},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.47699999809265137},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4397999942302704},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.43149998784065247},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.40070000290870667},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.38019999861717224},{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.3779999911785126},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3652999997138977},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.36039999127388},{"id":"https://openalex.org/C193519340","wikidata":"https://www.wikidata.org/wiki/Q891179","display_name":"Data loss","level":2,"score":0.3555999994277954},{"id":"https://openalex.org/C2776817793","wikidata":"https://www.wikidata.org/wiki/Q6553369","display_name":"Lineage (genetic)","level":3,"score":0.30790001153945923},{"id":"https://openalex.org/C44671064","wikidata":"https://www.wikidata.org/wiki/Q189800","display_name":"Gene pool","level":4,"score":0.30219998955726624},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3021000027656555},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2971999943256378},{"id":"https://openalex.org/C2988416141","wikidata":"https://www.wikidata.org/wiki/Q6031139","display_name":"Information loss","level":2,"score":0.28679999709129333},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.2565999925136566},{"id":"https://openalex.org/C2984717058","wikidata":"https://www.wikidata.org/wiki/Q1789476","display_name":"Reference database","level":2,"score":0.25110000371932983}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002591","descriptor_name":"Cetacea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002591","descriptor_name":"Cetacea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002591","descriptor_name":"Cetacea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002591","descriptor_name":"Cetacea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002591","descriptor_name":"Cetacea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002591","descriptor_name":"Cetacea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baaf065","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf065","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf065/64394807/baaf065.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:40996709","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40996709","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:11271109","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12462620","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12462620","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12462620/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaf065","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf065","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf065/64394807/baaf065.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2261371540","display_name":"Interdisciplinary Centre of Marine and Environmental Research","funder_award_id":"UIDP/04423/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3899863928","display_name":null,"funder_award_id":"UIDB/04423/2020","funder_id":"https://openalex.org/F4320329612","funder_display_name":"Centro Interdisciplinar de Investiga\u00e7\u00e3o Marinha e Ambiental"},{"id":"https://openalex.org/G4178622999","display_name":"Not Available","funder_award_id":"CEECINST/00133/2018/CP1510/CT0004","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6690768405","display_name":"\"Dead gene walking\": the adaptive value of lost genes (DeadGene)","funder_award_id":"2023.07615.CEECIND/CP2848/CT0007","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6918755010","display_name":null,"funder_award_id":"UIDP/04423/2020","funder_id":"https://openalex.org/F4320329612","funder_display_name":"Centro Interdisciplinar de Investiga\u00e7\u00e3o Marinha e Ambiental"},{"id":"https://openalex.org/G7103206524","display_name":"The Unique Metabolic Adaptations Of Marine Mammals and their Conservation - MoMMa","funder_award_id":"2022.00397.CEECIND/CP1728/CT0006","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G7552417000","display_name":"Interdisciplinary Centre of Marine and Environmental Research","funder_award_id":"UIDB/04423/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320329612","display_name":"Centro Interdisciplinar de Investiga\u00e7\u00e3o Marinha e Ambiental","ror":null},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4414509370.pdf"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W74841586","https://openalex.org/W1976579731","https://openalex.org/W1979151818","https://openalex.org/W1989559075","https://openalex.org/W2003151421","https://openalex.org/W2031984034","https://openalex.org/W2036676468","https://openalex.org/W2066036014","https://openalex.org/W2101006281","https://openalex.org/W2101135145","https://openalex.org/W2127115092","https://openalex.org/W2131582732","https://openalex.org/W2146712280","https://openalex.org/W2302501749","https://openalex.org/W2340497515","https://openalex.org/W2572235695","https://openalex.org/W2745741498","https://openalex.org/W2771315962","https://openalex.org/W2790517927","https://openalex.org/W2800245467","https://openalex.org/W2842239020","https://openalex.org/W2888173023","https://openalex.org/W2905061751","https://openalex.org/W2914427277","https://openalex.org/W2925139335","https://openalex.org/W2975015920","https://openalex.org/W3006691394","https://openalex.org/W3010961553","https://openalex.org/W3028636673","https://openalex.org/W3043329115","https://openalex.org/W3094962773","https://openalex.org/W3096509776","https://openalex.org/W3125382829","https://openalex.org/W3171752723","https://openalex.org/W3194024502","https://openalex.org/W3209545809","https://openalex.org/W4220692151","https://openalex.org/W4221059947","https://openalex.org/W4229375535","https://openalex.org/W4310122800","https://openalex.org/W4367173676","https://openalex.org/W4378745646","https://openalex.org/W4386386654","https://openalex.org/W4393936594","https://openalex.org/W4395045475","https://openalex.org/W4404001665","https://openalex.org/W4404225840"],"related_works":[],"abstract_inverted_index":{"Molecular":[0],"databases":[1],"are":[2],"essential":[3],"resources":[4,52],"for":[5,47],"both":[6],"experimental":[7],"and":[8,50,63,74,98,105,257],"computational":[9],"biologists.":[10],"The":[11,203],"rapid":[12],"increase":[13],"in":[14,23,102,182,201,253],"high-quality":[15],"genome":[16],"assemblies":[17],"has":[18],"led":[19],"to":[20,96,139,175,185,198,221],"a":[21,93,162,168,213],"surge":[22],"publications":[24],"describing":[25],"secondary":[26,79],"gene":[27,80,113,124,128,194,200,217,229,243],"loss":[28,81,114,125,130,218,230,244],"events":[29,115,219,231,245],"associated":[30],"with":[31,215],"lineage-specific":[32],"adaptations":[33],"across":[34,158,233],"diverse":[35],"vertebrate":[36],"groups.":[37],"This":[38,178,224],"growing":[39],"volume":[40],"of":[41,59,123,131,136,206],"information":[42,76,179],"underscores":[43],"the":[44,86,120,134,154,172,183,199,239,254],"urgent":[45],"need":[46],"organized,":[48],"searchable,":[49],"curated":[51,73],"that":[53],"facilitate":[54],"data":[55,101,137],"discovery,":[56],"allow":[57],"detection":[58],"broad":[60],"evolutionary":[61],"patterns,":[62],"support":[64,140],"downstream":[65],"analyses.":[66],"Currently,":[67],"no":[68],"existing":[69],"database":[70,184,240],"compiles":[71,112],"manually":[72],"validated":[75],"on":[77,211],"published":[78],"events.":[82],"Here,":[83],"we":[84],"introduce":[85],"Gene":[87,109,207],"Loss":[88,91,110,208],"Database":[89],"(Gene":[90],"DB),":[92],"platform":[94],"designed":[95],"centralize":[97],"present":[99],"these":[100],"an":[103],"easy-to-search":[104],"user-friendly":[106],"format":[107],"(https://geneloss.org/).":[108],"DB":[111,209],"alongside":[116],"supporting":[117],"evidence,":[118],"including":[119],"inferred":[121],"mechanism":[122],"(exon":[126],"deletion,":[127,129],"function":[132],"mutation),":[133],"type":[135],"used":[138],"inactivation":[141],"(genomic,":[142],"transcriptomic,":[143],"single/multiple":[144],"individual":[145],"sequence":[146],"reads,":[147],"synteny":[148],"maps)":[149],"and,":[150],"when":[151],"available,":[152],"whether":[153],"event":[155],"is":[156,180],"shared":[157],"all":[159],"lineages":[160],"within":[161],"taxon.":[163],"Each":[164],"entry":[165],"also":[166,251],"includes":[167,241],"short":[169],"excerpt":[170],"from":[171,246],"original":[173],"publication":[174],"provide":[176],"context.":[177],"structured":[181],"be":[186],"searchable":[187],"by":[188,193],"species,":[189],"gene,":[190],"taxa,":[191,248],"or":[192],"ontology":[195],"terms":[196],"linked":[197,220],"question.":[202],"initial":[204],"release":[205],"focuses":[210],"cetaceans,":[212],"lineage":[214],"numerous":[216],"aquatic":[222],"adaptations.":[223],"first":[225],"collection":[226],"comprises":[227],"1872":[228],"identified":[232],"57":[234],"cetacean":[235],"species.":[236],"In":[237],"addition,":[238],"1321":[242],"other":[247],"which":[249],"were":[250],"reported":[252],"same":[255],"studies":[256],"collected":[258],"simultaneously.":[259]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
