{"id":"https://openalex.org/W4414509316","doi":"https://doi.org/10.1093/database/baaf060","title":"The Microbe Directory: a centralized database for biological interpretation of microbiome data","display_name":"The Microbe Directory: a centralized database for biological interpretation of microbiome data","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4414509316","doi":"https://doi.org/10.1093/database/baaf060","pmid":"https://pubmed.ncbi.nlm.nih.gov/40996703"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaf060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf060","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf060/64394772/baaf060.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf060/64394772/baaf060.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069688376","display_name":"Maria A. Sierra","orcid":"https://orcid.org/0000-0003-4115-034X"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210100942","display_name":"Tri-Institutional PhD Program in Chemical Biology","ror":"https://ror.org/016twdg30","country_code":"US","type":"education","lineage":["https://openalex.org/I4210100942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maria A Sierra","raw_affiliation_strings":["Tri\u2013Institutional Computational Biology and Medicine Program, Weill Cornell Medicine , 445 East 69th Street, Room 205, New York, NY 10021 ,"],"raw_orcid":"https://orcid.org/0000-0003-4115-034X","affiliations":[{"raw_affiliation_string":"Tri\u2013Institutional Computational Biology and Medicine Program, Weill Cornell Medicine , 445 East 69th Street, Room 205, New York, NY 10021 ,","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210100942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054670450","display_name":"Krista Ryon","orcid":"https://orcid.org/0000-0001-9440-2729"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Krista Ryon","raw_affiliation_strings":["Weill Cornell Medicine Department of Physiology and Biophysics, , 1300 York Avenue, Rm E509, New York, NY 10065 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weill Cornell Medicine Department of Physiology and Biophysics, , 1300 York Avenue, Rm E509, New York, NY 10065 ,","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116370142","display_name":"Mohith Reddy Arikatla","orcid":"https://orcid.org/0000-0002-7199-4570"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohith R Arikatla","raw_affiliation_strings":["Weill Cornell Graduate School of Medical Sciences , 1300 York Ave. Box 65, New York, NY 10065 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weill Cornell Graduate School of Medical Sciences , 1300 York Ave. Box 65, New York, NY 10065 ,","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5119729395","display_name":"Radwa Elshafey","orcid":null},"institutions":[{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Radwa Elshafey","raw_affiliation_strings":["Hunter College, City University of New York , 695 Park Avenue, New York, NY 10065 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunter College, City University of New York , 695 Park Avenue, New York, NY 10065 ,","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108766826","display_name":"Hardik Bhaskar","orcid":null},"institutions":[{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hardik Bhaskar","raw_affiliation_strings":["Hunter College, City University of New York , 695 Park Avenue, New York, NY 10065 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunter College, City University of New York , 695 Park Avenue, New York, NY 10065 ,","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021852054","display_name":"Jacqueline Proszynski","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacqueline Proszynski","raw_affiliation_strings":["Weill Cornell Medicine Department of Physiology and Biophysics, , 1300 York Avenue, Rm E509, New York, NY 10065 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weill Cornell Medicine Department of Physiology and Biophysics, , 1300 York Avenue, Rm E509, New York, NY 10065 ,","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046689903","display_name":"Chandrima Bhattacharya","orcid":"https://orcid.org/0000-0003-2991-8491"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210100942","display_name":"Tri-Institutional PhD Program in Chemical Biology","ror":"https://ror.org/016twdg30","country_code":"US","type":"education","lineage":["https://openalex.org/I4210100942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chandrima Bhattacharya","raw_affiliation_strings":["Tri\u2013Institutional Computational Biology and Medicine Program, Weill Cornell Medicine , 445 East 69th Street, Room 205, New York, NY 10021 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tri\u2013Institutional Computational Biology and Medicine Program, Weill Cornell Medicine , 445 East 69th Street, Room 205, New York, NY 10021 ,","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210100942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017075765","display_name":"Heba Shaaban","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Heba Shaaban","raw_affiliation_strings":["Joan & Sanford I. Weill Medical College of Cornell University , 1300 York Ave. New York, NY 10065 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joan & Sanford I. Weill Medical College of Cornell University , 1300 York Ave. New York, NY 10065 ,","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004559693","display_name":"David Danko","orcid":"https://orcid.org/0000-0002-1456-9498"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210100942","display_name":"Tri-Institutional PhD Program in Chemical Biology","ror":"https://ror.org/016twdg30","country_code":"US","type":"education","lineage":["https://openalex.org/I4210100942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David C Danko","raw_affiliation_strings":["Tri\u2013Institutional Computational Biology and Medicine Program, Weill Cornell Medicine , 445 East 69th Street, Room 205, New York, NY 10021 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tri\u2013Institutional Computational Biology and Medicine Program, Weill Cornell Medicine , 445 East 69th Street, Room 205, New York, NY 10021 ,","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210100942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028698707","display_name":"Pradeep M. Ambrose","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pradeep Ambrose","raw_affiliation_strings":["Weill Cornell Medicine Department of Physiology and Biophysics, , 1300 York Avenue, Rm E509, New York, NY 10065 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weill Cornell Medicine Department of Physiology and Biophysics, , 1300 York Avenue, Rm E509, New York, NY 10065 ,","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023294550","display_name":"Sarah A. Spaulding","orcid":"https://orcid.org/0000-0002-9787-7743"},"institutions":[{"id":"https://openalex.org/I182286215","display_name":"Institute of Arctic and Alpine Research","ror":"https://ror.org/00924z688","country_code":"US","type":"facility","lineage":["https://openalex.org/I182286215","https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sarah A Spaulding","raw_affiliation_strings":["Institute of Arctic and Alpine Research, University of Colorado Boulder , 4001 Discovery Dr, Boulder, CO 80303 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Arctic and Alpine Research, University of Colorado Boulder , 4001 Discovery Dr, Boulder, CO 80303 ,","institution_ids":["https://openalex.org/I182286215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061891239","display_name":"Mar\u00eda Mercedes Zambrano","orcid":"https://orcid.org/0000-0002-0796-4473"},"institutions":[{"id":"https://openalex.org/I4210136514","display_name":"CorpoGen (Colombia)","ror":"https://ror.org/03npzn484","country_code":"CO","type":"company","lineage":["https://openalex.org/I4210136514"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Maria Mercedes Zambrano","raw_affiliation_strings":["Molecular Genetics, Corporacion CorpoGen Research Center , Carrera 4 # 20-41, Bogot\u00e1 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Genetics, Corporacion CorpoGen Research Center , Carrera 4 # 20-41, Bogot\u00e1 ,","institution_ids":["https://openalex.org/I4210136514"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085435765","display_name":"Christopher E. Mason","orcid":"https://orcid.org/0000-0002-1850-1642"},"institutions":[{"id":"https://openalex.org/I142608572","display_name":"Prince Sattam Bin Abdulaziz University","ror":"https://ror.org/04jt46d36","country_code":"SA","type":"education","lineage":["https://openalex.org/I142608572"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210097825","display_name":"MIND Research Institute","ror":"https://ror.org/00we1gw23","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210097825"]},{"id":"https://openalex.org/I4210100942","display_name":"Tri-Institutional PhD Program in Chemical Biology","ror":"https://ror.org/016twdg30","country_code":"US","type":"education","lineage":["https://openalex.org/I4210100942"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Christopher E Mason","raw_affiliation_strings":["The Feil Family Brain and Mind Research Institute, Weill Cornell Medicine , Belfer Research Building 413 E 69th St, New York, NY 10021 ,","The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine , 1305 York Avenue, New York, NY 10065 ,","WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine , 1300 York Avenue, New York, NY 10065 ,","Tri\u2013Institutional Computational Biology and Medicine Program, Weill Cornell Medicine , 445 East 69th Street, Room 205, New York, NY 10021 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Feil Family Brain and Mind Research Institute, Weill Cornell Medicine , Belfer Research Building 413 E 69th St, New York, NY 10021 ,","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210097825"]},{"raw_affiliation_string":"The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine , 1305 York Avenue, New York, NY 10065 ,","institution_ids":["https://openalex.org/I142608572","https://openalex.org/I205783295"]},{"raw_affiliation_string":"WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine , 1300 York Avenue, New York, NY 10065 ,","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Tri\u2013Institutional Computational Biology and Medicine Program, Weill Cornell Medicine , 445 East 69th Street, Room 205, New York, NY 10021 ,","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210100942"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15768005,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2025","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.7577000260353088},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7017999887466431},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6758999824523926},{"id":"https://openalex.org/keywords/directory","display_name":"Directory","score":0.6323999762535095},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.6026999950408936},{"id":"https://openalex.org/keywords/human-microbiome-project","display_name":"Human Microbiome Project","score":0.5659000277519226},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.48899999260902405},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.427700012922287}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7577000260353088},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7017999887466431},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6758999824523926},{"id":"https://openalex.org/C2777683733","wikidata":"https://www.wikidata.org/wiki/Q201456","display_name":"Directory","level":2,"score":0.6323999762535095},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.6026999950408936},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5996999740600586},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.5659000277519226},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.48899999260902405},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44359999895095825},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.427700012922287},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4205000102519989},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.41920000314712524},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4147999882698059},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3962000012397766},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3666999936103821},{"id":"https://openalex.org/C48702757","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Biological classification","level":2,"score":0.33889999985694885},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.33880001306533813},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.3122999966144562},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.30379998683929443},{"id":"https://openalex.org/C3019978661","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut microbiome","level":3,"score":0.28859999775886536},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2621999979019165}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baaf060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf060","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf060/64394772/baaf060.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:40996703","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40996703","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:11270881","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12462379","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12462379","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12462379/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaf060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf060","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf060/64394772/baaf060.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1002298878","display_name":null,"funder_award_id":"R01AI151059","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2118287037","display_name":null,"funder_award_id":"80NSSC24K1052","funder_id":"https://openalex.org/F4320306101","funder_display_name":"National Aeronautics and Space Administration"},{"id":"https://openalex.org/G2271792669","display_name":null,"funder_award_id":"80NSSC24K0728","funder_id":"https://openalex.org/F4320306101","funder_display_name":"National Aeronautics and Space Administration"},{"id":"https://openalex.org/G4241239948","display_name":null,"funder_award_id":"U01DA053941","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6119411420","display_name":null,"funder_award_id":"U54AG089334","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306101","display_name":"National Aeronautics and Space Administration","ror":"https://ror.org/027ka1x80"},{"id":"https://openalex.org/F4320315621","display_name":"WorldQuant Foundation","ror":null},{"id":"https://openalex.org/F4320322037","display_name":"Nuclear Safety and Security Commission","ror":"https://ror.org/05qk3ge34"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332513","display_name":"Weill Cornell Medical College","ror":"https://ror.org/02r109517"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4414509316.pdf","grobid_xml":"https://content.openalex.org/works/W4414509316.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W181884455","https://openalex.org/W1225182422","https://openalex.org/W1783894595","https://openalex.org/W1864722676","https://openalex.org/W1969094530","https://openalex.org/W1981011016","https://openalex.org/W2013371150","https://openalex.org/W2024342748","https://openalex.org/W2025002407","https://openalex.org/W2052938909","https://openalex.org/W2070416595","https://openalex.org/W2090444419","https://openalex.org/W2103088074","https://openalex.org/W2111044841","https://openalex.org/W2115699469","https://openalex.org/W2118754867","https://openalex.org/W2119497560","https://openalex.org/W2131186249","https://openalex.org/W2131487197","https://openalex.org/W2131581981","https://openalex.org/W2153100136","https://openalex.org/W2170351296","https://openalex.org/W2291003811","https://openalex.org/W2311812208","https://openalex.org/W2506776021","https://openalex.org/W2519300105","https://openalex.org/W2565824505","https://openalex.org/W2568859793","https://openalex.org/W2587885563","https://openalex.org/W2781843896","https://openalex.org/W2783270610","https://openalex.org/W2803260350","https://openalex.org/W2896553013","https://openalex.org/W2902943436","https://openalex.org/W2945130630","https://openalex.org/W2961892950","https://openalex.org/W2968450569","https://openalex.org/W2996367462","https://openalex.org/W3029811621","https://openalex.org/W3031317618","https://openalex.org/W3086004424","https://openalex.org/W3111278950","https://openalex.org/W3113578674","https://openalex.org/W3113849064","https://openalex.org/W3123817721","https://openalex.org/W3138243053","https://openalex.org/W3163970933","https://openalex.org/W3172624471","https://openalex.org/W3201357410","https://openalex.org/W3217158636","https://openalex.org/W4200144201","https://openalex.org/W4205954574","https://openalex.org/W4226424892","https://openalex.org/W4244771168","https://openalex.org/W4280624188","https://openalex.org/W4285258995","https://openalex.org/W4300818992","https://openalex.org/W4307846647","https://openalex.org/W4308616455","https://openalex.org/W4388637778","https://openalex.org/W4406632626"],"related_works":[],"abstract_inverted_index":{"The":[0,24],"Microbe":[1],"Directory":[2],"(TMD)":[3],"is":[4],"a":[5,50,152],"centralized":[6],"database":[7,25,78],"of":[8,21,31,49,52,62,111,133,155],"metadata":[9],"for":[10],"microbes":[11],"from":[12,93],"all":[13],"domains":[14],"that":[15,75,128,157],"helps":[16],"with":[17,119],"the":[18,47,77,86,109,130],"biological":[19,166],"interpretation":[20],"metagenomic":[22],"data.":[23,64],"comprises":[26],"phenotypical":[27],"and":[28,104,126,137,145,164],"ecological":[29],"traits":[30],"microorganisms,":[32],"which":[33],"have":[34,70],"been":[35,44],"verified":[36],"by":[37,46,122],"independent":[38],"manual":[39,60,147],"annotations.":[40],"This":[41],"effort":[42],"has":[43],"possible":[45],"help":[48,159],"community":[51],"volunteer":[53],"students":[54],"worldwide":[55],"who":[56],"were":[57],"trained":[58],"in":[59,135],"curation":[61],"microbiology":[63],"To":[65],"summarize":[66],"this":[67],"information,":[68],"we":[69,114],"built":[71],"an":[72],"interactive":[73],"browser":[74],"makes":[76],"accessible":[79],"to":[80,89,160],"everyone,":[81],"including":[82],"non-bioinformaticians.":[83],"We":[84],"used":[85],"TMD":[87,150],"data":[88,163],"analyse":[90],"microbiome":[91,162],"samples":[92],"different":[94],"projects":[95],"such":[96],"as":[97],"MetaSUB,":[98],"TARA":[99],"Oceans,":[100],"Human":[101],"Microbiome":[102,106],"Project,":[103,107],"Sponge":[105],"showcasing":[108],"utility":[110],"TMD.":[112],"Furthermore,":[113],"compare":[115],"our":[116],"microbial":[117,139],"annotations":[118,120],"collected":[121],"artificial":[123],"intelligence":[124],"(AI)":[125],"demonstrate":[127],"despite":[129],"high":[131],"speed":[132],"AI":[134],"reviewing":[136],"collecting":[138],"data,":[140],"annotation":[141],"requires":[142],"domain":[143],"knowledge":[144],"therefore":[146],"curation.":[148],"Collectively,":[149],"provides":[151],"unique":[153],"source":[154],"information":[156],"can":[158],"interpret":[161],"uncover":[165],"associations.":[167],"Database":[168],"URL:":[169],"www.themicrobedirectory.com/.":[170]},"counts_by_year":[],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
