{"id":"https://openalex.org/W4410217348","doi":"https://doi.org/10.1093/database/baaf035","title":"GenDiS3 database: census on the prevalence of protein domain superfamilies of known structure in the entire sequence database","display_name":"GenDiS3 database: census on the prevalence of protein domain superfamilies of known structure in the entire sequence database","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4410217348","doi":"https://doi.org/10.1093/database/baaf035","pmid":"https://pubmed.ncbi.nlm.nih.gov/40343712"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaf035","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf035","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf035/63136097/baaf035.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf035/63136097/baaf035.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058777288","display_name":"Sarthak Joshi","orcid":null},"institutions":[{"id":"https://openalex.org/I11947397","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27","country_code":"IN","type":"education","lineage":["https://openalex.org/I11947397","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]},{"id":"https://openalex.org/I194223965","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76","country_code":"IN","type":"facility","lineage":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sarthak Joshi","raw_affiliation_strings":["National Centre for Biological Sciences, Tata Institute of Fundamental Research , GKVK Campus, Bellary Road, Bangalore 560065,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Biological Sciences, Tata Institute of Fundamental Research , GKVK Campus, Bellary Road, Bangalore 560065,","institution_ids":["https://openalex.org/I11947397","https://openalex.org/I194223965"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Shailendu Mohapatra","orcid":null},"institutions":[{"id":"https://openalex.org/I4210153885","display_name":"Institute of Bioinformatics and Applied Biotechnology","ror":"https://ror.org/04qcpkd70","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210153885"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Shailendu Mohapatra","raw_affiliation_strings":["Computational Biology, Insitute of Bioinformatics and Applied Biotechnology , Bangalore 560100,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology, Insitute of Bioinformatics and Applied Biotechnology , Bangalore 560100,","institution_ids":["https://openalex.org/I4210153885"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078084291","display_name":"Dhwani Kumar","orcid":null},"institutions":[{"id":"https://openalex.org/I11947397","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27","country_code":"IN","type":"education","lineage":["https://openalex.org/I11947397","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]},{"id":"https://openalex.org/I194223965","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76","country_code":"IN","type":"facility","lineage":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Dhwani Kumar","raw_affiliation_strings":["National Centre for Biological Sciences, Tata Institute of Fundamental Research , GKVK Campus, Bellary Road, Bangalore 560065,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Biological Sciences, Tata Institute of Fundamental Research , GKVK Campus, Bellary Road, Bangalore 560065,","institution_ids":["https://openalex.org/I11947397","https://openalex.org/I194223965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030296629","display_name":"Adwait Joshi","orcid":"https://orcid.org/0000-0002-2834-6746"},"institutions":[{"id":"https://openalex.org/I11947397","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27","country_code":"IN","type":"education","lineage":["https://openalex.org/I11947397","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]},{"id":"https://openalex.org/I194223965","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76","country_code":"IN","type":"facility","lineage":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Adwait Joshi","raw_affiliation_strings":["National Centre for Biological Sciences, Tata Institute of Fundamental Research , GKVK Campus, Bellary Road, Bangalore 560065,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Biological Sciences, Tata Institute of Fundamental Research , GKVK Campus, Bellary Road, Bangalore 560065,","institution_ids":["https://openalex.org/I11947397","https://openalex.org/I194223965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101429253","display_name":"Meenakshi Iyer","orcid":null},"institutions":[{"id":"https://openalex.org/I11947397","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27","country_code":"IN","type":"education","lineage":["https://openalex.org/I11947397","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]},{"id":"https://openalex.org/I194223965","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76","country_code":"IN","type":"facility","lineage":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Meenakshi Iyer","raw_affiliation_strings":["National Centre for Biological Sciences, Tata Institute of Fundamental Research , GKVK Campus, Bellary Road, Bangalore 560065,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Biological Sciences, Tata Institute of Fundamental Research , GKVK Campus, Bellary Road, Bangalore 560065,","institution_ids":["https://openalex.org/I11947397","https://openalex.org/I194223965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076779054","display_name":"Ramanathan Sowdhamini","orcid":"https://orcid.org/0000-0002-6642-2367"},"institutions":[{"id":"https://openalex.org/I11947397","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27","country_code":"IN","type":"education","lineage":["https://openalex.org/I11947397","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]},{"id":"https://openalex.org/I194223965","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76","country_code":"IN","type":"facility","lineage":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]},{"id":"https://openalex.org/I4210153885","display_name":"Institute of Bioinformatics and Applied Biotechnology","ror":"https://ror.org/04qcpkd70","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210153885"]},{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Ramanathan Sowdhamini","raw_affiliation_strings":["Computational Biology, Insitute of Bioinformatics and Applied Biotechnology , Bangalore 560100,","Molecular Biophysics Unit, Indian Institute of Science , Bangalore 560012,","National Centre for Biological Sciences, Tata Institute of Fundamental Research , GKVK Campus, Bellary Road, Bangalore 560065,"],"raw_orcid":"https://orcid.org/0000-0002-6642-2367","affiliations":[{"raw_affiliation_string":"Computational Biology, Insitute of Bioinformatics and Applied Biotechnology , Bangalore 560100,","institution_ids":["https://openalex.org/I4210153885"]},{"raw_affiliation_string":"Molecular Biophysics Unit, Indian Institute of Science , Bangalore 560012,","institution_ids":["https://openalex.org/I59270414"]},{"raw_affiliation_string":"National Centre for Biological Sciences, Tata Institute of Fundamental Research , GKVK Campus, Bellary Road, Bangalore 560065,","institution_ids":["https://openalex.org/I11947397","https://openalex.org/I194223965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5076779054"],"corresponding_institution_ids":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I4210153885","https://openalex.org/I59270414"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05954335,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2025","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6919618248939514},{"id":"https://openalex.org/keywords/census","display_name":"Census","score":0.6129974126815796},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5730226039886475},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.5701873898506165},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.48301681876182556},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44156506657600403},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2722576856613159},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13838908076286316},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.11512568593025208},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08422321081161499},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06958281993865967}],"concepts":[{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6919618248939514},{"id":"https://openalex.org/C52130261","wikidata":"https://www.wikidata.org/wiki/Q39825","display_name":"Census","level":3,"score":0.6129974126815796},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5730226039886475},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.5701873898506165},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.48301681876182556},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44156506657600403},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2722576856613159},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13838908076286316},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.11512568593025208},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08422321081161499},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06958281993865967},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baaf035","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf035","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf035/63136097/baaf035.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:40343712","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40343712","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmid:40402782","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40402782","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/database/baaf035","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf035","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf035/63136097/baaf035.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4047155736","display_name":null,"funder_award_id":"JBR/2021/000006","funder_id":"https://openalex.org/F4320334771","funder_display_name":"Science and Engineering Research Board"}],"funders":[{"id":"https://openalex.org/F4320334771","display_name":"Science and Engineering Research Board","ror":"https://ror.org/03ffdsr55"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410217348.pdf"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1973354680","https://openalex.org/W2011235285","https://openalex.org/W2021102624","https://openalex.org/W2024755629","https://openalex.org/W2036149515","https://openalex.org/W2055043387","https://openalex.org/W2077514957","https://openalex.org/W2085277871","https://openalex.org/W2096525273","https://openalex.org/W2108067237","https://openalex.org/W2108607486","https://openalex.org/W2127322768","https://openalex.org/W2130479394","https://openalex.org/W2131272473","https://openalex.org/W2133657429","https://openalex.org/W2135912076","https://openalex.org/W2138122982","https://openalex.org/W2142678478","https://openalex.org/W2142821542","https://openalex.org/W2158714788","https://openalex.org/W2163910672","https://openalex.org/W2809964141","https://openalex.org/W2926533301","https://openalex.org/W2944545881","https://openalex.org/W3095583226","https://openalex.org/W3106745904","https://openalex.org/W3215918380","https://openalex.org/W4205440119","https://openalex.org/W4213230108","https://openalex.org/W4220937102","https://openalex.org/W4289274885","https://openalex.org/W4307425304","https://openalex.org/W4308616064","https://openalex.org/W4310951880","https://openalex.org/W4401211208"],"related_works":["https://openalex.org/W2128472366","https://openalex.org/W621243299","https://openalex.org/W5594354","https://openalex.org/W4244351752","https://openalex.org/W2601163983","https://openalex.org/W2364090708","https://openalex.org/W2145323372","https://openalex.org/W2037896692","https://openalex.org/W2136066520","https://openalex.org/W2354598492"],"abstract_inverted_index":{"Despite":[0],"the":[1,13,20,31,38,48,74,103,121,145,177,254,262],"vast":[2,75,146],"amount":[3],"of":[4,15,54,70,77,113,124,138,141,169,179,196,205,223],"sequence":[5,41,106,147,188],"data":[6],"available,":[7],"a":[8,67,116,129,213,270],"significant":[9,251],"disparity":[10,29],"exists":[11],"between":[12,40,105],"number":[14,69],"protein":[16,88,125,139],"sequences":[17],"identified":[18,200],"and":[19,43,47,107,171,201,231,249,261,278],"relatively":[21],"few":[22],"structures":[23,93,143],"that":[24,64],"have":[25,62,150],"been":[26],"resolved.":[27],"This":[28],"highlights":[30],"challenge":[32],"in":[33,220,248,275],"structural":[34,45,71,108],"biology":[35],"to":[36,58,86,133],"bridge":[37],"gap":[39,104],"information":[42,119],"3D":[44],"data,":[46],"necessity":[49],"for":[50,135,166,173,190,273],"robust":[51],"databases":[52],"capable":[53],"linking":[55],"distant":[56],"homologs":[57,137,189],"known":[59,142],"structures.":[60],"Studies":[61],"indicated":[63],"there":[65],"are":[66,94,99,226],"limited":[68],"folds,":[72],"despite":[73],"diversity":[76,233],"proteins.":[78,237],"Hence,":[79],"computational":[80,131],"tools":[81,264],"can":[82,246],"enhance":[83],"our":[84],"ability":[85],"classify":[87],"sequences,":[89],"much":[90],"before":[91],"their":[92,97],"determined":[95],"or":[96],"functions":[98],"characterized,":[100],"thereby":[101],"bridging":[102],"data.":[109],"GenDiS":[110,258],"(Genomic":[111],"Distribution":[112],"Superfamilies)":[114],"is":[115],"repository":[117],"with":[118],"on":[120,216],"genomic":[122],"distribution":[123],"domain":[126,180,221],"superfamilies,":[127],"involving":[128],"one-time":[130],"exercise":[132],"search":[134],"trusted":[136],"domains":[140],"against":[144],"database.":[148],"We":[149,238],"updated":[151],"this":[152],"database":[153],"employing":[154],"advanced":[155],"bioinformatics":[156],"tools,":[157,184],"including":[158],"DELTA-BLAST":[159],"(domain":[160],"enhanced":[161],"lookup":[162],"time":[163],"accelerated":[164],"BLAST)":[165],"initial":[167],"detection":[168],"hits":[170],"HMMSCAN":[172],"validation,":[174],"significantly":[175],"improving":[176],"accuracy":[178],"identification.":[181],"Using":[182],"these":[183,224,235],"over":[185],"151":[186],"million":[187,203],"2060":[191],"superfamilies":[192],"[SCOPe":[193],"(Structural":[194],"Classification":[195],"Proteins":[197],"extended)]":[198],"were":[199,207],"116":[202],"out":[204],"them":[206],"validated":[208],"as":[209],"true":[210],"positives.":[211],"Through":[212],"case":[214],"study":[215],"glycolysis-related":[217],"enzymes,":[218],"variations":[219],"architectures":[222],"enzymes":[225],"explored,":[227],"revealing":[228],"evolutionary":[229,255,279],"changes":[230],"functional":[232,276],"among":[234],"essential":[236],"present":[239],"another":[240],"case,":[241],"LOG":[242],"gene,":[243],"where":[244],"one":[245],"tune":[247],"find":[250],"mutations":[252],"across":[253],"lineage.":[256],"The":[257],"database,":[259],"GenDiS3,":[260],"associated":[263],"made":[265],"available":[266],"at":[267],"https://caps.ncbs.res.in/gendis3/":[268],"offer":[269],"powerful":[271],"resource":[272],"researchers":[274],"annotation":[277],"studies.":[280],"Database":[281],"URL:":[282],"https://caps.ncbs.res.in/gendis3/.":[283]},"counts_by_year":[],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
