{"id":"https://openalex.org/W4408266186","doi":"https://doi.org/10.1093/database/baaf022","title":"Pipeline to explore information on genome editing using large language models and genome editing meta-database","display_name":"Pipeline to explore information on genome editing using large language models and genome editing meta-database","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4408266186","doi":"https://doi.org/10.1093/database/baaf022","pmid":"https://pubmed.ncbi.nlm.nih.gov/40056431"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaf022","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf022","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf022/62342687/baaf022.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf022/62342687/baaf022.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057568759","display_name":"Takayuki Suzuki","orcid":"https://orcid.org/0000-0003-4481-9109"},"institutions":[{"id":"https://openalex.org/I113306721","display_name":"Hiroshima University","ror":"https://ror.org/03t78wx29","country_code":"JP","type":"education","lineage":["https://openalex.org/I113306721"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takayuki Suzuki","raw_affiliation_strings":["Graduate School of Integrated Sciences for Life, Hiroshima University , 3-10-23 Kagamiyama, Higashi-Hiroshima 739-0046,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Integrated Sciences for Life, Hiroshima University , 3-10-23 Kagamiyama, Higashi-Hiroshima 739-0046,","institution_ids":["https://openalex.org/I113306721"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079934306","display_name":"Hidemasa Bono","orcid":"https://orcid.org/0000-0003-4413-0651"},"institutions":[{"id":"https://openalex.org/I113306721","display_name":"Hiroshima University","ror":"https://ror.org/03t78wx29","country_code":"JP","type":"education","lineage":["https://openalex.org/I113306721"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Hidemasa Bono","raw_affiliation_strings":["Genome Editing Innovation Center, Hiroshima University , 3-10-23 Kagamiyama, Higashi-Hiroshima 739-0046,","Graduate School of Integrated Sciences for Life, Hiroshima University , 3-10-23 Kagamiyama, Higashi-Hiroshima 739-0046,"],"raw_orcid":"https://orcid.org/0000-0003-4413-0651","affiliations":[{"raw_affiliation_string":"Genome Editing Innovation Center, Hiroshima University , 3-10-23 Kagamiyama, Higashi-Hiroshima 739-0046,","institution_ids":["https://openalex.org/I113306721"]},{"raw_affiliation_string":"Graduate School of Integrated Sciences for Life, Hiroshima University , 3-10-23 Kagamiyama, Higashi-Hiroshima 739-0046,","institution_ids":["https://openalex.org/I113306721"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5079934306"],"corresponding_institution_ids":["https://openalex.org/I113306721"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.4074,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.55538606,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"2025","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7907790541648865},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.683194100856781},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6318345665931702},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5295684337615967},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5272656679153442},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5223804116249084},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3338070511817932},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17321962118148804},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14969772100448608},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11362269520759583},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07542046904563904}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7907790541648865},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.683194100856781},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6318345665931702},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5295684337615967},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5272656679153442},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5223804116249084},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3338070511817932},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17321962118148804},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14969772100448608},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11362269520759583},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07542046904563904}],"mesh":[{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baaf022","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf022","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf022/62342687/baaf022.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:40056431","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40056431","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmid:40402786","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40402786","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:10704133","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11890094","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaf022","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf022","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaf022/62342687/baaf022.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5400000214576721,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[{"id":"https://openalex.org/G2328570597","display_name":null,"funder_award_id":"JPMJFS2129","funder_id":"https://openalex.org/F2726011503","funder_display_name":"University Fellowship Creation Project for Creating Scientific and Technological Innovation"},{"id":"https://openalex.org/G2990362279","display_name":null,"funder_award_id":"JPMJPF2010","funder_id":"https://openalex.org/F4320338239","funder_display_name":"Co-creation place formation support program"},{"id":"https://openalex.org/G6566973504","display_name":null,"funder_award_id":"JPMJFS2129","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G7516181952","display_name":null,"funder_award_id":"JPMJPF2010","funder_id":"https://openalex.org/F4320338123","funder_display_name":"Program on Open Innovation Platform with Enterprises, Research Institute and Academia"},{"id":"https://openalex.org/G864412083","display_name":"Bio-Digital Transformation \uff08\u30d0\u30a4\u30aaDX\uff09\u7523\u5b66\u5171\u5275\u62e0\u70b9","funder_award_id":"JPMJPF2010","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"}],"funders":[{"id":"https://openalex.org/F2726011503","display_name":"University Fellowship Creation Project for Creating Scientific and Technological Innovation","ror":null},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320338123","display_name":"Program on Open Innovation Platform with Enterprises, Research Institute and Academia","ror":null},{"id":"https://openalex.org/F4320338239","display_name":"Co-creation place formation support program","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4408266186.pdf","grobid_xml":"https://content.openalex.org/works/W4408266186.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1968342623","https://openalex.org/W1986028255","https://openalex.org/W2045435533","https://openalex.org/W2077381938","https://openalex.org/W2078308455","https://openalex.org/W2112006537","https://openalex.org/W2152505144","https://openalex.org/W2275721306","https://openalex.org/W2284413061","https://openalex.org/W2336828812","https://openalex.org/W2528458398","https://openalex.org/W2592714106","https://openalex.org/W2889722506","https://openalex.org/W2910184090","https://openalex.org/W2981137429","https://openalex.org/W3191911259","https://openalex.org/W4207016466","https://openalex.org/W4220997417","https://openalex.org/W4229449348","https://openalex.org/W4308387633","https://openalex.org/W4313215911","https://openalex.org/W4362515116","https://openalex.org/W4382797939","https://openalex.org/W4385655467","https://openalex.org/W4388630549","https://openalex.org/W4389782046","https://openalex.org/W4391836235","https://openalex.org/W4392002118","https://openalex.org/W4392303996","https://openalex.org/W4393391096","https://openalex.org/W4393936594","https://openalex.org/W4401665208","https://openalex.org/W4405590246","https://openalex.org/W6695984718","https://openalex.org/W6848297964","https://openalex.org/W6851775633"],"related_works":["https://openalex.org/W3037187668","https://openalex.org/W2086525401","https://openalex.org/W4234772502","https://openalex.org/W2380685755","https://openalex.org/W4205762803","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W2987420353","https://openalex.org/W1491897707"],"abstract_inverted_index":{"Genome":[0,63],"editing":[1],"(GE)":[2],"is":[3,49,85],"widely":[4],"recognized":[5],"as":[6,28,71,75],"an":[7],"effective":[8,53],"and":[9,34,55,112,121,164,180],"valuable":[10],"technology":[11],"in":[12,46,87],"life":[13],"sciences":[14],"research.":[15,159],"However,":[16],"certain":[17],"genes":[18,156,177],"are":[19,168],"difficult":[20],"to":[21,69,154,170],"edit":[22],"depending":[23],"on":[24,110],"some":[25],"factors":[26],"such":[27],"the":[29,39,52,62,107,132,140,172,182],"type":[30],"of":[31,43,57,124,151,175,184],"species,":[32],"sequences,":[33],"GE":[35,44,73,100,125,142,162,179],"tools.":[36],"Therefore,":[37],"confirming":[38],"presence":[40],"or":[41],"absence":[42],"practices":[45],"previous":[47],"publications":[48],"crucial":[50],"for":[51,97,118,157,178],"designing":[54],"establishment":[56],"research":[58,185],"using":[59,102,131,186],"GE.":[60,88,187],"Although":[61],"Editing":[64],"Meta-database":[65],"(GEM:":[66],"https://bonohu.hiroshima-u.ac.jp/gem/)":[67],"aims":[68],"provide":[70],"comprehensive":[72],"information":[74,101,108,126,143,163],"possible,":[76],"it":[77],"does":[78],"not":[79],"indicate":[80],"how":[81],"each":[82],"registered":[83],"gene":[84],"involved":[86],"In":[89,136],"this":[90,152],"study,":[91],"we":[92,146],"developed":[93],"a":[94,119,148],"systematic":[95,120],"method":[96,153],"extracting":[98],"essential":[99],"large":[103],"language":[104],"models":[105],"from":[106],"based":[109],"GEM":[111,134],"GE-related":[113,166],"articles.":[114],"This":[115],"approach":[116],"allows":[117],"efficient":[122,173],"investigation":[123],"that":[127],"cannot":[128],"be":[129],"achieved":[130],"current":[133],"alone.":[135],"addition,":[137],"by":[138],"converting":[139],"extracted":[141,161],"into":[144],"metrics,":[145],"propose":[147],"potential":[149],"application":[150],"prioritize":[155],"future":[158],"The":[160],"novel":[165],"scores":[167],"expected":[169],"facilitate":[171],"selection":[174],"target":[176],"support":[181],"design":[183],"Database":[188],"URLs:":[189],"https://github.com/szktkyk/extract_geinfo,":[190],"https://github.com/szktkyk/visualize_geinfo.":[191]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-03-10T00:00:00"}
