{"id":"https://openalex.org/W4408744238","doi":"https://doi.org/10.1093/database/baaf020","title":"Post-composing ontology terms for efficient phenotyping in plant breeding","display_name":"Post-composing ontology terms for efficient phenotyping in plant breeding","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4408744238","doi":"https://doi.org/10.1093/database/baaf020","pmid":"https://pubmed.ncbi.nlm.nih.gov/40117331"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaf020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf020","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baaf020","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036847815","display_name":"Naama Menda","orcid":"https://orcid.org/0000-0002-9117-8116"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I87424562","display_name":"Ithaca College","ror":"https://ror.org/01kw1gj07","country_code":"US","type":"education","lineage":["https://openalex.org/I87424562"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Naama Menda","raw_affiliation_strings":["Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,"],"raw_orcid":"https://orcid.org/0000-0002-9117-8116","affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006717561","display_name":"Bryan J. Ellerbrock","orcid":"https://orcid.org/0009-0008-7937-0181"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]},{"id":"https://openalex.org/I87424562","display_name":"Ithaca College","ror":"https://ror.org/01kw1gj07","country_code":"US","type":"education","lineage":["https://openalex.org/I87424562"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan J Ellerbrock","raw_affiliation_strings":["Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,","Plant and Environmental Sciences, Pee Dee Research and Education Center, Clemson University , 2200 Pocket Road, Florence, Clemson, SC 29506,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]},{"raw_affiliation_string":"Plant and Environmental Sciences, Pee Dee Research and Education Center, Clemson University , 2200 Pocket Road, Florence, Clemson, SC 29506,","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077040720","display_name":"Christiano C. Simoes","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I87424562","display_name":"Ithaca College","ror":"https://ror.org/01kw1gj07","country_code":"US","type":"education","lineage":["https://openalex.org/I87424562"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christiano C Simoes","raw_affiliation_strings":["Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107454519","display_name":"Srikanth Kumar Karaikal","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I87424562","display_name":"Ithaca College","ror":"https://ror.org/01kw1gj07","country_code":"US","type":"education","lineage":["https://openalex.org/I87424562"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Srikanth Kumar Karaikal","raw_affiliation_strings":["Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,","School of Integrative Plant Sciences, Section of Plant Breeding and Genetics Cornell University , 236 Tower Road, Ithaca, NY 14853,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]},{"raw_affiliation_string":"School of Integrative Plant Sciences, Section of Plant Breeding and Genetics Cornell University , 236 Tower Road, Ithaca, NY 14853,","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107437769","display_name":"Christine Nyaga","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I87424562","display_name":"Ithaca College","ror":"https://ror.org/01kw1gj07","country_code":"US","type":"education","lineage":["https://openalex.org/I87424562"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christine Nyaga","raw_affiliation_strings":["Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,","School of Integrative Plant Sciences, Section of Plant Breeding and Genetics Cornell University , 236 Tower Road, Ithaca, NY 14853,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]},{"raw_affiliation_string":"School of Integrative Plant Sciences, Section of Plant Breeding and Genetics Cornell University , 236 Tower Road, Ithaca, NY 14853,","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091508449","display_name":"Mirella Flores-Gonzalez","orcid":"https://orcid.org/0000-0002-7759-1617"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I87424562","display_name":"Ithaca College","ror":"https://ror.org/01kw1gj07","country_code":"US","type":"education","lineage":["https://openalex.org/I87424562"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mirella Flores-Gonzalez","raw_affiliation_strings":["Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082409156","display_name":"Isaak Tecle","orcid":"https://orcid.org/0000-0002-8677-9793"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I87424562","display_name":"Ithaca College","ror":"https://ror.org/01kw1gj07","country_code":"US","type":"education","lineage":["https://openalex.org/I87424562"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Isaak Y Tecle","raw_affiliation_strings":["Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030657787","display_name":"David Lyon","orcid":"https://orcid.org/0000-0002-1927-3565"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I87424562","display_name":"Ithaca College","ror":"https://ror.org/01kw1gj07","country_code":"US","type":"education","lineage":["https://openalex.org/I87424562"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Lyon","raw_affiliation_strings":["Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,","Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , 1 Cyclotron Road, Berkeley, CA 94720,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]},{"raw_affiliation_string":"Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , 1 Cyclotron Road, Berkeley, CA 94720,","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069712642","display_name":"Afolabi Agbona","orcid":"https://orcid.org/0000-0002-9756-5432"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Afolabi Agbona","raw_affiliation_strings":["Texas A&M Agrilife Research Center , 2415 Business Hwy 83 E, Weslaco, TX 78596,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Texas A&M Agrilife Research Center , 2415 Business Hwy 83 E, Weslaco, TX 78596,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050123205","display_name":"Paterne A. Agre","orcid":"https://orcid.org/0000-0003-1231-2530"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Paterne A Agre","raw_affiliation_strings":["International Institute of Tropical Agriculture (IITA) , PMB 5320, Oyo Road, Ibadan, Oyo State 200001,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Institute of Tropical Agriculture (IITA) , PMB 5320, Oyo Road, Ibadan, Oyo State 200001,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084188697","display_name":"Prasad Peteti","orcid":"https://orcid.org/0000-0002-6013-8947"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Prasad Peteti","raw_affiliation_strings":["International Institute of Tropical Agriculture (IITA) , PMB 5320, Oyo Road, Ibadan, Oyo State 200001,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Institute of Tropical Agriculture (IITA) , PMB 5320, Oyo Road, Ibadan, Oyo State 200001,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003192102","display_name":"Violet Akech","orcid":"https://orcid.org/0000-0003-2330-0682"},"institutions":[{"id":"https://openalex.org/I4210091864","display_name":"International Institute of Tropical Agriculture","ror":"https://ror.org/00dvtcv48","country_code":"UG","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I4210091864","https://openalex.org/I64180646"]}],"countries":["UG"],"is_corresponding":false,"raw_author_name":"Violet Akech","raw_affiliation_strings":["International Institute of Tropical Agriculture (IITA) , 8JW4+3Q6, Naguru E Rd, Kampala,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Institute of Tropical Agriculture (IITA) , 8JW4+3Q6, Naguru E Rd, Kampala,","institution_ids":["https://openalex.org/I4210091864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075416321","display_name":"Amos Asiimwe","orcid":"https://orcid.org/0000-0001-8216-6810"},"institutions":[{"id":"https://openalex.org/I4210167293","display_name":"National Agricultural Research Organisation","ror":"https://ror.org/05rmt1x67","country_code":"UG","type":"government","lineage":["https://openalex.org/I4210167293"]}],"countries":["UG"],"is_corresponding":false,"raw_author_name":"Amos Asiimwe","raw_affiliation_strings":["National Agricultural Research Laboratories , P.O.Box 7065, Kawanda,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Agricultural Research Laboratories , P.O.Box 7065, Kawanda,","institution_ids":["https://openalex.org/I4210167293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031608528","display_name":"\u00c9glantine Fauvelle","orcid":null},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I4210136436","display_name":"Institut Agro Montpelier","ror":null,"country_code":"FR","type":null,"lineage":["https://openalex.org/I4210136436"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387152967","display_name":"UMR QualiSud","ror":"https://ror.org/01nfvkq89","country_code":null,"type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I198415970","https://openalex.org/I19894307","https://openalex.org/I24715933","https://openalex.org/I24906876","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210117091","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4387152967","https://openalex.org/I4399657933","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Eglantine Fauvelle","raw_affiliation_strings":["CIRAD - PERSYST, UMR QualiSud , 73 rue Jean-Fran\u00e7ois Breton, Montpellier F-34398,","QualiSud, Universit\u00e9 de Montpellier, Avignon Universit\u00e9, CIRAD, Institut Agro, IRD, Universit\u00e9 de La R\u00e9union , Montpellier,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIRAD - PERSYST, UMR QualiSud , 73 rue Jean-Fran\u00e7ois Breton, Montpellier F-34398,","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4387152967"]},{"raw_affiliation_string":"QualiSud, Universit\u00e9 de Montpellier, Avignon Universit\u00e9, CIRAD, Institut Agro, IRD, Universit\u00e9 de La R\u00e9union , Montpellier,","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210166444","https://openalex.org/I4210136436"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057672955","display_name":"Karima Meghar","orcid":"https://orcid.org/0000-0002-7732-9184"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I4210136436","display_name":"Institut Agro Montpelier","ror":null,"country_code":"FR","type":null,"lineage":["https://openalex.org/I4210136436"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387152967","display_name":"UMR QualiSud","ror":"https://ror.org/01nfvkq89","country_code":null,"type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I198415970","https://openalex.org/I19894307","https://openalex.org/I24715933","https://openalex.org/I24906876","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210117091","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4387152967","https://openalex.org/I4399657933","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Karima Meghar","raw_affiliation_strings":["CIRAD - PERSYST, UMR QualiSud , 73 rue Jean-Fran\u00e7ois Breton, Montpellier F-34398,","QualiSud, Universit\u00e9 de Montpellier, Avignon Universit\u00e9, CIRAD, Institut Agro, IRD, Universit\u00e9 de La R\u00e9union , Montpellier,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIRAD - PERSYST, UMR QualiSud , 73 rue Jean-Fran\u00e7ois Breton, Montpellier F-34398,","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4387152967"]},{"raw_affiliation_string":"QualiSud, Universit\u00e9 de Montpellier, Avignon Universit\u00e9, CIRAD, Institut Agro, IRD, Universit\u00e9 de La R\u00e9union , Montpellier,","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210166444","https://openalex.org/I4210136436"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061964310","display_name":"Thierry Tran","orcid":"https://orcid.org/0000-0002-9557-3340"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I4210136436","display_name":"Institut Agro Montpelier","ror":null,"country_code":"FR","type":null,"lineage":["https://openalex.org/I4210136436"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387152967","display_name":"UMR QualiSud","ror":"https://ror.org/01nfvkq89","country_code":null,"type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I198415970","https://openalex.org/I19894307","https://openalex.org/I24715933","https://openalex.org/I24906876","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210117091","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4387152967","https://openalex.org/I4399657933","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thierry Tran","raw_affiliation_strings":["CIRAD - PERSYST, UMR QualiSud , 73 rue Jean-Fran\u00e7ois Breton, Montpellier F-34398,","International Center for Tropical Agriculture (CIAT) , Km 17, Recta Cali-Palmira,","QualiSud, Universit\u00e9 de Montpellier, Avignon Universit\u00e9, CIRAD, Institut Agro, IRD, Universit\u00e9 de La R\u00e9union , Montpellier,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIRAD - PERSYST, UMR QualiSud , 73 rue Jean-Fran\u00e7ois Breton, Montpellier F-34398,","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4387152967"]},{"raw_affiliation_string":"International Center for Tropical Agriculture (CIAT) , Km 17, Recta Cali-Palmira,","institution_ids":[]},{"raw_affiliation_string":"QualiSud, Universit\u00e9 de Montpellier, Avignon Universit\u00e9, CIRAD, Institut Agro, IRD, Universit\u00e9 de La R\u00e9union , Montpellier,","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210166444","https://openalex.org/I4210136436"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041636056","display_name":"Dominique Dufour","orcid":"https://orcid.org/0000-0002-7794-8671"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I4210136436","display_name":"Institut Agro Montpelier","ror":null,"country_code":"FR","type":null,"lineage":["https://openalex.org/I4210136436"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387152967","display_name":"UMR QualiSud","ror":"https://ror.org/01nfvkq89","country_code":null,"type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I198415970","https://openalex.org/I19894307","https://openalex.org/I24715933","https://openalex.org/I24906876","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210117091","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4387152967","https://openalex.org/I4399657933","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Dominique Dufour","raw_affiliation_strings":["CIRAD - PERSYST, UMR QualiSud , 73 rue Jean-Fran\u00e7ois Breton, Montpellier F-34398,","QualiSud, Universit\u00e9 de Montpellier, Avignon Universit\u00e9, CIRAD, Institut Agro, IRD, Universit\u00e9 de La R\u00e9union , Montpellier,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIRAD - PERSYST, UMR QualiSud , 73 rue Jean-Fran\u00e7ois Breton, Montpellier F-34398,","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4387152967"]},{"raw_affiliation_string":"QualiSud, Universit\u00e9 de Montpellier, Avignon Universit\u00e9, CIRAD, Institut Agro, IRD, Universit\u00e9 de La R\u00e9union , Montpellier,","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210166444","https://openalex.org/I4210136436"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056354760","display_name":"Laurel Cooper","orcid":"https://orcid.org/0000-0002-6379-8932"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laurel Cooper","raw_affiliation_strings":["Department of Botany and Plant Pathology, Oregon State University , 2503 Cordley Hall, 2701 SW Campus Way, Corvallis, OR 97331,"],"raw_orcid":"https://orcid.org/0000-0002-6379-8932","affiliations":[{"raw_affiliation_string":"Department of Botany and Plant Pathology, Oregon State University , 2503 Cordley Hall, 2701 SW Campus Way, Corvallis, OR 97331,","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051211037","display_name":"Marie\u2010Ang\u00e9lique Laporte","orcid":"https://orcid.org/0000-0002-8461-9745"},"institutions":[{"id":"https://openalex.org/I145236414","display_name":"Alliance Bioversity International - CIAT","ror":"https://ror.org/04xsxqp89","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I145236414"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marie-Ang\u00e9lique Laporte","raw_affiliation_strings":["Bioversity International, Digital Inclusion Lever , Via di San Domenico 1, Roma 00153,"],"raw_orcid":"https://orcid.org/0000-0002-8461-9745","affiliations":[{"raw_affiliation_string":"Bioversity International, Digital Inclusion Lever , Via di San Domenico 1, Roma 00153,","institution_ids":["https://openalex.org/I145236414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009186560","display_name":"Elizabeth Arnaud","orcid":"https://orcid.org/0000-0002-6020-5919"},"institutions":[{"id":"https://openalex.org/I145236414","display_name":"Alliance Bioversity International - CIAT","ror":"https://ror.org/04xsxqp89","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I145236414"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Elizabeth Arnaud","raw_affiliation_strings":["Bioversity International, Digital Inclusion Lever , Via di San Domenico 1, Roma 00153,"],"raw_orcid":"https://orcid.org/0000-0002-6020-5919","affiliations":[{"raw_affiliation_string":"Bioversity International, Digital Inclusion Lever , Via di San Domenico 1, Roma 00153,","institution_ids":["https://openalex.org/I145236414"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018498646","display_name":"Lukas A. Mueller","orcid":"https://orcid.org/0000-0001-8640-1750"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I87424562","display_name":"Ithaca College","ror":"https://ror.org/01kw1gj07","country_code":"US","type":"education","lineage":["https://openalex.org/I87424562"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lukas A Mueller","raw_affiliation_strings":["Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,"],"raw_orcid":"https://orcid.org/0000-0001-8640-1750","affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute , 533 Tower Rd, Ithaca, NY 14853 ,","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":21,"corresponding_author_ids":["https://openalex.org/A5036847815"],"corresponding_institution_ids":["https://openalex.org/I205783295","https://openalex.org/I87424562"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.925,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.69781364,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"2025","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9735000133514404,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13238","display_name":"Botanical Studies and Applications","score":0.9649999737739563,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7952147722244263},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7493715286254883},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.6696294546127319},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.6337084770202637},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5709092020988464},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5019063949584961},{"id":"https://openalex.org/keywords/granularity","display_name":"Granularity","score":0.4468756318092346},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.44673702120780945},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35394486784935},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3390291929244995},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13565227389335632},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08093556761741638}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7952147722244263},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7493715286254883},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.6696294546127319},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.6337084770202637},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5709092020988464},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5019063949584961},{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.4468756318092346},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.44673702120780945},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35394486784935},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3390291929244995},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13565227389335632},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08093556761741638},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baaf020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf020","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:40117331","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40117331","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmid:40402802","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40402802","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:HAL:hal-05182955v1","is_oa":true,"landing_page_url":"https://hal.science/hal-05182955","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database - The journal of Biological Databases and Curation, 2025, 2025, pp.baaf020. &#x27E8;10.1093/database/baaf020&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:agritrop.cirad.fr:612646","is_oa":true,"landing_page_url":"http://agritrop.cirad.fr/612646/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402311","display_name":"Agritrop (Cirad)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I131077856","host_organization_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","host_organization_lineage":["https://openalex.org/I131077856"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:11927528","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11927528","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaf020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaf020","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2453266859","display_name":null,"funder_award_id":"1340112, 2029854, 1940330","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W2030197114","https://openalex.org/W2096704019","https://openalex.org/W2109529365","https://openalex.org/W2113927720","https://openalex.org/W2117499974","https://openalex.org/W2122245399","https://openalex.org/W2151397621","https://openalex.org/W2168670121","https://openalex.org/W2169652952","https://openalex.org/W3048114998","https://openalex.org/W3089193614","https://openalex.org/W4226141736","https://openalex.org/W4307361456","https://openalex.org/W4366742775","https://openalex.org/W4378173376","https://openalex.org/W4389450384","https://openalex.org/W6948759170"],"related_works":["https://openalex.org/W2378767206","https://openalex.org/W1540871478","https://openalex.org/W328308450","https://openalex.org/W282641168","https://openalex.org/W2931688134","https://openalex.org/W2376963063","https://openalex.org/W2066396794","https://openalex.org/W2366734808","https://openalex.org/W2391444248","https://openalex.org/W2390716080"],"abstract_inverted_index":{"Ontologies":[0],"are":[1,146,160],"widely":[2],"used":[3],"in":[4],"databases":[5],"to":[6,20,59,72,79,90,94,132,140,148,163],"standardize":[7],"data,":[8],"improving":[9],"data":[10,62,81],"quality,":[11],"integration,":[12],"and":[13,36,66,83,97,109,183],"ease":[14],"of":[15,44,76,136],"comparison.":[16],"Within":[17],"ontologies":[18,126],"tailored":[19,139],"diverse":[21],"use":[22,99],"cases,":[23],"post-composing":[24,87,121],"user-defined":[25],"terms":[26,93,145,172,193],"reconciles":[27],"the":[28,33,39,56,73,130,164],"demands":[29],"for":[30,49,53,194],"standardization":[31],"on":[32,38,105,124],"one":[34],"hand":[35],"flexibility":[37],"other.":[40],"In":[41],"many":[42],"instances":[43],"Breedbase,":[45],"a":[46,120,156,188],"digital":[47],"ecosystem":[48],"plant":[50,77,107,178],"breeding":[51,153,184],"designed":[52,147],"genomic":[54],"selection,":[55],"goal":[57],"is":[58],"capture":[60],"phenotypic":[61],"using":[63],"highly":[64,191],"curated":[65],"rigorous":[67],"crop":[68,165],"ontologies,":[69],"while":[70],"adapting":[71],"specific":[74,96,192],"requirements":[75],"breeders":[78],"record":[80],"quickly":[82],"efficiently.":[84],"For":[85],"example,":[86],"enables":[88],"users":[89,128,169],"tailor":[91],"ontology":[92],"suit":[95],"granular":[98],"cases":[100],"such":[101,176],"as":[102,177,187],"repeated":[103],"measurements":[104],"different":[106],"parts":[108],"special":[110],"sample":[111],"preparation":[112],"techniques.":[113],"To":[114],"achieve":[115],"this,":[116],"we":[117],"have":[118],"implemented":[119],"tool":[122],"based":[123],"orthogonal":[125],"providing":[127],"with":[129],"ability":[131],"introduce":[133],"additional":[134],"levels":[135],"phenotyping":[137],"granularity":[138],"unique":[141],"experimental":[142],"designs.":[143],"Post-composed":[144],"be":[149],"reused":[150],"by":[151],"all":[152],"programs":[154],"within":[155],"Breedbase":[157,168],"instance":[158],"but":[159],"not":[161],"exported":[162],"reference":[166],"ontologies.":[167],"can":[170],"post-compose":[171],"across":[173],"various":[174],"categories,":[175],"anatomy,":[179],"treatments,":[180],"temporal":[181],"events,":[182],"cycles,":[185],"and,":[186],"result,":[189],"generate":[190],"more":[195],"accurate":[196],"phenotyping.":[197]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-14T08:36:36.166977","created_date":"2025-03-23T00:00:00"}
