{"id":"https://openalex.org/W4402580858","doi":"https://doi.org/10.1093/database/baae098","title":"collectNET: a web server for integrated inference of cell\u2013cell communication network","display_name":"collectNET: a web server for integrated inference of cell\u2013cell communication network","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4402580858","doi":"https://doi.org/10.1093/database/baae098","pmid":"https://pubmed.ncbi.nlm.nih.gov/39283594"},"language":"en","primary_location":{"id":"doi:10.1093/database/baae098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae098","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baae098","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102431658","display_name":"Yan Pan","orcid":"https://orcid.org/0009-0003-3422-4635"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Pan","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics, Bioinformatics Division at the Beijing National Research Center for Information Science and Technology, Center for Synthetic and Systems Biology, Department of Automation, Tsinghua University , FIT 1-107, Beijing 100084, China"],"raw_orcid":"https://orcid.org/0009-0003-3422-4635","affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics, Bioinformatics Division at the Beijing National Research Center for Information Science and Technology, Center for Synthetic and Systems Biology, Department of Automation, Tsinghua University , FIT 1-107, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080423090","display_name":"Zijing Gao","orcid":"https://orcid.org/0009-0005-7269-0244"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zijing Gao","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics, Bioinformatics Division at the Beijing National Research Center for Information Science and Technology, Center for Synthetic and Systems Biology, Department of Automation, Tsinghua University , FIT 1-107, Beijing 100084, China"],"raw_orcid":"https://orcid.org/0009-0005-7269-0244","affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics, Bioinformatics Division at the Beijing National Research Center for Information Science and Technology, Center for Synthetic and Systems Biology, Department of Automation, Tsinghua University , FIT 1-107, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031327612","display_name":"Xuejian Cui","orcid":"https://orcid.org/0009-0007-8145-212X"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuejian Cui","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics, Bioinformatics Division at the Beijing National Research Center for Information Science and Technology, Center for Synthetic and Systems Biology, Department of Automation, Tsinghua University , FIT 1-107, Beijing 100084, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics, Bioinformatics Division at the Beijing National Research Center for Information Science and Technology, Center for Synthetic and Systems Biology, Department of Automation, Tsinghua University , FIT 1-107, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100332620","display_name":"Zhen Li","orcid":"https://orcid.org/0000-0002-7048-9011"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Li","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics, Bioinformatics Division at the Beijing National Research Center for Information Science and Technology, Center for Synthetic and Systems Biology, Department of Automation, Tsinghua University , FIT 1-107, Beijing 100084, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics, Bioinformatics Division at the Beijing National Research Center for Information Science and Technology, Center for Synthetic and Systems Biology, Department of Automation, Tsinghua University , FIT 1-107, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100623015","display_name":"Rui Jiang","orcid":"https://orcid.org/0000-0002-7533-3753"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rui Jiang","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics, Bioinformatics Division at the Beijing National Research Center for Information Science and Technology, Center for Synthetic and Systems Biology, Department of Automation, Tsinghua University , FIT 1-107, Beijing 100084, China"],"raw_orcid":"https://orcid.org/0000-0002-7533-3753","affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics, Bioinformatics Division at the Beijing National Research Center for Information Science and Technology, Center for Synthetic and Systems Biology, Department of Automation, Tsinghua University , FIT 1-107, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I99065089"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.159,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.45507052,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"2024","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11932","display_name":"Wireless Body Area Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11932","display_name":"Wireless Body Area Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13052","display_name":"Molecular Communication and Nanonetworks","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10148","display_name":"Advanced MIMO Systems Optimization","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.715934157371521},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5889297723770142},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5786997675895691},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5758230686187744},{"id":"https://openalex.org/keywords/application-server","display_name":"Application server","score":0.4108751714229584},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.39579880237579346},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.3639168441295624},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16466191411018372}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.715934157371521},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5889297723770142},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5786997675895691},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5758230686187744},{"id":"https://openalex.org/C164554305","wikidata":"https://www.wikidata.org/wiki/Q71550","display_name":"Application server","level":2,"score":0.4108751714229584},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.39579880237579346},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.3639168441295624},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16466191411018372}],"mesh":[{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baae098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae098","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:39283594","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39283594","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11403813","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11403813","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baae098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae098","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4099999964237213,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G4168565681","display_name":null,"funder_award_id":"62273194","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5013440220","display_name":null,"funder_award_id":"2021YFF1200902 2023YFF1204802","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1016059894","https://openalex.org/W1994606929","https://openalex.org/W2001332900","https://openalex.org/W2088430139","https://openalex.org/W2136212502","https://openalex.org/W2146980885","https://openalex.org/W2405858985","https://openalex.org/W2786672974","https://openalex.org/W2917343300","https://openalex.org/W2999410311","https://openalex.org/W3007935255","https://openalex.org/W3013151148","https://openalex.org/W3094645479","https://openalex.org/W3099810371","https://openalex.org/W3112976705","https://openalex.org/W3128999657","https://openalex.org/W3132661792","https://openalex.org/W3146817258","https://openalex.org/W3184931457","https://openalex.org/W4281716326","https://openalex.org/W4283592141","https://openalex.org/W4296580701","https://openalex.org/W4298124981","https://openalex.org/W4306404361","https://openalex.org/W4323925083","https://openalex.org/W4383186616","https://openalex.org/W4384283548","https://openalex.org/W4387728447","https://openalex.org/W6748816842","https://openalex.org/W6851259543"],"related_works":["https://openalex.org/W2373688948","https://openalex.org/W2351236610","https://openalex.org/W1558090658","https://openalex.org/W2391370821","https://openalex.org/W4387028430","https://openalex.org/W2352746198","https://openalex.org/W1605604037","https://openalex.org/W4361214649","https://openalex.org/W2367830256","https://openalex.org/W2146230088"],"abstract_inverted_index":{"Cell-cell":[0],"communication":[1,113],"(CCC)":[2],"through":[3],"ligand-receptor":[4],"(L-R)":[5],"pairs":[6,114],"forms":[7],"the":[8,38],"cornerstone":[9],"for":[10,45,62],"complex":[11],"functionalities":[12],"in":[13,127],"multicellular":[14],"organisms.":[15],"Deciphering":[16],"such":[17],"intercellular":[18],"signaling":[19],"can":[20],"contribute":[21],"to":[22],"unraveling":[23],"disease":[24],"mechanisms":[25],"and":[26,33,75,93,136],"enable":[27],"targeted":[28],"therapy.":[29],"Nonetheless,":[30],"notable":[31],"biases":[32],"inconsistencies":[34],"are":[35],"evident":[36],"among":[37],"inferential":[39],"outcomes":[40],"generated":[41],"by":[42],"current":[43],"methods":[44],"inferring":[46],"CCC":[47,64,107],"network.":[48],"To":[49],"fill":[50],"this":[51],"gap,":[52],"we":[53],"developed":[54],"collectNET":[55,78,102,123],"(http://health.tsinghua.edu.cn/collectnet)":[56],"as":[57],"a":[58,80,105,129],"comprehensive":[59,71],"web":[60],"platform":[61],"analyzing":[63],"network,":[65],"with":[66,85],"efficient":[67],"calculation,":[68],"hierarchical":[69],"browsing,":[70],"statistics,":[72],"advanced":[73],"searching,":[74],"intuitive":[76],"visualization.":[77],"provides":[79],"reliable":[81],"online":[82],"inference":[83,99],"service":[84],"prior":[86],"knowledge":[87],"of":[88,96,133],"three":[89,97],"public":[90],"L-R":[91],"databases":[92],"systematic":[94],"integration":[95],"mainstream":[98],"methods.":[100],"Additionally,":[101],"has":[103],"assembled":[104],"human":[106],"atlas,":[108],"including":[109],"126":[110],"785":[111],"significant":[112],"based":[115],"on":[116],"343":[117],"023":[118],"cells.":[119],"We":[120],"anticipate":[121],"that":[122],"will":[124],"benefit":[125],"researchers":[126],"gaining":[128],"more":[130],"holistic":[131],"understanding":[132],"cell":[134],"development":[135],"differentiation":[137],"mechanisms.":[138],"Database":[139],"URL:":[140],"http://health.tsinghua.edu.cn/collectnet.":[141]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
