{"id":"https://openalex.org/W4402533779","doi":"https://doi.org/10.1093/database/baae095","title":"RegulaTome: a corpus of typed, directed, and signed relations between biomedical entities in the scientific literature","display_name":"RegulaTome: a corpus of typed, directed, and signed relations between biomedical entities in the scientific literature","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4402533779","doi":"https://doi.org/10.1093/database/baae095","pmid":"https://pubmed.ncbi.nlm.nih.gov/39265993"},"language":"en","primary_location":{"id":"doi:10.1093/database/baae095","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae095","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baae095/59133755/baae095.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baae095/59133755/baae095.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026049213","display_name":"Katerina Nastou","orcid":"https://orcid.org/0000-0003-3611-5726"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Katerina Nastou","raw_affiliation_strings":["Novo Nordisk Foundation Center for Protein Research, University of Copenhagen , Blegdamsvej 3, Copenhagen 2200, Denmark"],"raw_orcid":"https://orcid.org/0000-0003-3611-5726","affiliations":[{"raw_affiliation_string":"Novo Nordisk Foundation Center for Protein Research, University of Copenhagen , Blegdamsvej 3, Copenhagen 2200, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I124055696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086256360","display_name":"Farrokh Mehryary","orcid":"https://orcid.org/0000-0002-5555-2828"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Farrokh Mehryary","raw_affiliation_strings":["TurkuNLP Group, Department of Computing, University of Turku , Vesilinnantie 5, Turku 20014, Finland"],"raw_orcid":"https://orcid.org/0000-0002-5555-2828","affiliations":[{"raw_affiliation_string":"TurkuNLP Group, Department of Computing, University of Turku , Vesilinnantie 5, Turku 20014, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007825608","display_name":"Tomoko Ohta","orcid":"https://orcid.org/0000-0002-9418-8352"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tomoko Ohta","raw_affiliation_strings":["Textimi , 1-37-13 Kitazawa, Tokyo, Setagaya-ku 155-0031, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Textimi , 1-37-13 Kitazawa, Tokyo, Setagaya-ku 155-0031, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018656314","display_name":"Jouni Luoma","orcid":"https://orcid.org/0000-0001-9286-1868"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jouni Luoma","raw_affiliation_strings":["TurkuNLP Group, Department of Computing, University of Turku , Vesilinnantie 5, Turku 20014, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TurkuNLP Group, Department of Computing, University of Turku , Vesilinnantie 5, Turku 20014, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066925770","display_name":"Sampo Pyysalo","orcid":"https://orcid.org/0000-0002-6279-5000"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Sampo Pyysalo","raw_affiliation_strings":["TurkuNLP Group, Department of Computing, University of Turku , Vesilinnantie 5, Turku 20014, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TurkuNLP Group, Department of Computing, University of Turku , Vesilinnantie 5, Turku 20014, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005772961","display_name":"Lars Juhl Jensen","orcid":"https://orcid.org/0000-0001-7885-715X"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Lars Juhl Jensen","raw_affiliation_strings":["Novo Nordisk Foundation Center for Protein Research, University of Copenhagen , Blegdamsvej 3, Copenhagen 2200, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Novo Nordisk Foundation Center for Protein Research, University of Copenhagen , Blegdamsvej 3, Copenhagen 2200, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I124055696"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.189,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.78475538,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"2024","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6420987844467163},{"id":"https://openalex.org/keywords/scientific-literature","display_name":"Scientific literature","score":0.5423259735107422},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.4920465648174286},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4488534927368164},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.43454962968826294},{"id":"https://openalex.org/keywords/library-science","display_name":"Library science","score":0.38167792558670044},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.37027543783187866},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16851097345352173},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.13045871257781982}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6420987844467163},{"id":"https://openalex.org/C2781083858","wikidata":"https://www.wikidata.org/wiki/Q17327049","display_name":"Scientific literature","level":2,"score":0.5423259735107422},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.4920465648174286},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4488534927368164},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43454962968826294},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.38167792558670044},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.37027543783187866},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16851097345352173},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.13045871257781982},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baae095","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae095","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baae095/59133755/baae095.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:39265993","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39265993","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11394941","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11394941","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11394941/pdf/baae095.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/2e8bd44e-4949-4ff2-bce6-c7e32e0b04ca","is_oa":true,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/2e8bd44e-4949-4ff2-bce6-c7e32e0b04ca","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nastou , K , Mehryary , F , Ohta , T , Luoma , J , Pyysalo , S & Jensen , L J 2024 , ' RegulaTome : a corpus of typed, directed, and signed relations between biomedical entities in the scientific literature ' , Database , vol. 2024 , baae095 . https://doi.org/10.1093/database/baae095","raw_type":"article"},{"id":"pmh:oai:www.utupub.fi:10024/192964","is_oa":false,"landing_page_url":"https://www.utupub.fi/handle/10024/192964","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1093/database/baae095","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae095","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baae095/59133755/baae095.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6399999856948853,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1244917469","display_name":"Deep learning for next-generation biomedical text mining","funder_award_id":"332844","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G251831730","display_name":null,"funder_award_id":"332844","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G4282887365","display_name":null,"funder_award_id":"NNF14CC0001","funder_id":"https://openalex.org/F4320322436","funder_display_name":"Novo Nordisk"},{"id":"https://openalex.org/G6662978750","display_name":null,"funder_award_id":"NNF14CC0001","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"}],"funders":[{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320322436","display_name":"Novo Nordisk","ror":"https://ror.org/0435rc536"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402533779.pdf","grobid_xml":"https://content.openalex.org/works/W4402533779.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W8550301","https://openalex.org/W142474614","https://openalex.org/W1850865022","https://openalex.org/W2032566933","https://openalex.org/W2043764521","https://openalex.org/W2064030835","https://openalex.org/W2095867585","https://openalex.org/W2101727078","https://openalex.org/W2103017472","https://openalex.org/W2122496897","https://openalex.org/W2154142897","https://openalex.org/W2155518941","https://openalex.org/W2166474856","https://openalex.org/W2170189740","https://openalex.org/W2346452181","https://openalex.org/W2389836769","https://openalex.org/W2511500211","https://openalex.org/W2513010979","https://openalex.org/W2911489562","https://openalex.org/W2915895751","https://openalex.org/W3093053585","https://openalex.org/W3100452049","https://openalex.org/W3178755335","https://openalex.org/W3211402536","https://openalex.org/W4283318325","https://openalex.org/W4295736374","https://openalex.org/W4307843054","https://openalex.org/W4308616064","https://openalex.org/W4308834893","https://openalex.org/W4323036511","https://openalex.org/W4389105137","https://openalex.org/W4389579575","https://openalex.org/W4402535087","https://openalex.org/W6600347082","https://openalex.org/W6605746126","https://openalex.org/W6658704000","https://openalex.org/W6704842505","https://openalex.org/W6725579993","https://openalex.org/W6726056116","https://openalex.org/W6785110541","https://openalex.org/W6849832982"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4213212078","https://openalex.org/W405926467","https://openalex.org/W4402742086","https://openalex.org/W1965611333","https://openalex.org/W4404882811","https://openalex.org/W2032228042","https://openalex.org/W1505098369","https://openalex.org/W1999916109","https://openalex.org/W3132349679"],"abstract_inverted_index":{"In":[0,58],"the":[1,7,13,35,68,86,103,135,147,180,205,223,244],"field":[2],"of":[3,30,37,40,70,79,107,122,139,149,176,182,193,207,222],"biomedical":[4,73,140,217,246],"text":[5],"mining,":[6],"ability":[8],"to":[9,33,110,117,201,204,215],"extract":[10],"relations":[11,84,96,151],"from":[12,243],"literature":[14],"is":[15,26,114],"crucial":[16],"for":[17,154,173],"advancing":[18],"both":[19,145],"theoretical":[20],"research":[21],"and":[22,46,52,137,152,188,211,231],"practical":[23],"applications.":[24],"There":[25],"a":[27,64,119,131,169,174,190,220],"notable":[28],"shortage":[29],"corpora":[31],"designed":[32,116],"enhance":[34],"extraction":[36,75],"multiple":[38],"types":[39,125],"relations,":[41,241],"particularly":[42],"focusing":[43],"on":[44,82,164,227],"proteins":[45],"protein-containing":[47],"entities":[48],"such":[49],"as":[50,54,56],"complexes":[51],"families,":[53],"well":[55],"chemicals.":[57],"this":[59,165,177],"work,":[60],"we":[61],"present":[62],"RegulaTome,":[63],"corpus":[65,113,144,166],"that":[66],"overcomes":[67],"limitations":[69],"several":[71],"existing":[72],"relation":[74,124],"(RE)":[76],"corpora,":[77],"many":[78],"which":[80],"concentrate":[81],"single-type":[83],"at":[85],"sentence":[87],"level.":[88],"RegulaTome":[89],"stands":[90],"out":[91],"by":[92],"offering":[93],"16":[94],"961":[95],"annotated":[97],"in":[98,134,158,185,238],">2500":[99],"documents,":[100],"making":[101],"it":[102],"most":[104],"extensive":[105],"dataset":[106],"its":[108],"kind":[109],"date.":[111],"This":[112,196],"specifically":[115],"cover":[118],"broader":[120],"spectrum":[121],">40":[123],"beyond":[126],"those":[127],"traditionally":[128],"explored,":[129],"setting":[130],"new":[132],"benchmark":[133],"complexity":[136],"depth":[138],"RE":[141,213,225],"tasks.":[142,218],"Our":[143],"broadens":[146],"scope":[148],"detected":[150],"allows":[153],"achieving":[155],"noteworthy":[156],"accuracy":[157],"RE.":[159],"A":[160],"transformer-based":[161],"model":[162],"trained":[163,224],"has":[167],"demonstrated":[168],"promising":[170],"F1-score":[171],"(66.6%)":[172],"task":[175],"complexity,":[178],"underscoring":[179],"effectiveness":[181],"our":[183],"approach":[184],"accurately":[186],"identifying":[187],"categorizing":[189],"wide":[191],"array":[192],"biological":[194],"relations.":[195],"achievement":[197],"highlights":[198],"RegulaTome's":[199],"potential":[200],"significantly":[202],"contribute":[203],"development":[206],"more":[208],"sophisticated,":[209],"efficient,":[210],"accurate":[212],"systems":[214],"tackle":[216],"Finally,":[219],"run":[221],"system":[226],"all":[228],"PubMed":[229],"abstracts":[230],"PMC":[232],"Open":[233],"Access":[234],"full-text":[235],"documents":[236],"resulted":[237],">18":[239],"million":[240],"extracted":[242],"entire":[245],"literature.":[247]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5}],"updated_date":"2026-06-29T08:53:18.405633","created_date":"2025-10-10T00:00:00"}
