{"id":"https://openalex.org/W4401500773","doi":"https://doi.org/10.1093/database/baae071","title":"The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop","display_name":"The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4401500773","doi":"https://doi.org/10.1093/database/baae071","pmid":"https://pubmed.ncbi.nlm.nih.gov/39126204"},"language":"en","primary_location":{"id":"doi:10.1093/database/baae071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae071","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baae071","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008126200","display_name":"Rezarta Islamaj","orcid":"https://orcid.org/0000-0001-5651-1860"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rezarta Islamaj","raw_affiliation_strings":["National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States"],"raw_orcid":"https://orcid.org/0000-0001-5651-1860","affiliations":[{"raw_affiliation_string":"National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States","institution_ids":["https://openalex.org/I2800548410","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058918482","display_name":"Chih-Hsuan Wei","orcid":"https://orcid.org/0000-0001-5094-7321"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chih-Hsuan Wei","raw_affiliation_strings":["National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States"],"raw_orcid":"https://orcid.org/0000-0001-5094-7321","affiliations":[{"raw_affiliation_string":"National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States","institution_ids":["https://openalex.org/I2800548410","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016587469","display_name":"Po\u2010Ting Lai","orcid":"https://orcid.org/0000-0003-2025-318X"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Po-Ting Lai","raw_affiliation_strings":["National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States","institution_ids":["https://openalex.org/I2800548410","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100619435","display_name":"Ling Luo","orcid":"https://orcid.org/0000-0002-5141-0259"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ling Luo","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology , No.2 Linggong Road, Ganjingzi District, Dalian, Liaoning 116024, China"],"raw_orcid":"https://orcid.org/0000-0002-5141-0259","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology , No.2 Linggong Road, Ganjingzi District, Dalian, Liaoning 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014022956","display_name":"Cathleen Coss","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cathleen Coss","raw_affiliation_strings":["National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States","institution_ids":["https://openalex.org/I2800548410","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017317463","display_name":"Preeti Gokal Kochar","orcid":"https://orcid.org/0000-0003-2109-1100"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Preeti Gokal Kochar","raw_affiliation_strings":["National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States","institution_ids":["https://openalex.org/I2800548410","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074714105","display_name":"Nicholas Miliaras","orcid":"https://orcid.org/0000-0001-8624-7781"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas Miliaras","raw_affiliation_strings":["National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States","institution_ids":["https://openalex.org/I2800548410","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030641585","display_name":"Oleg Rodionov","orcid":"https://orcid.org/0000-0002-3202-2883"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oleg Rodionov","raw_affiliation_strings":["National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States","institution_ids":["https://openalex.org/I2800548410","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056998113","display_name":"Keiko Sekiya","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keiko Sekiya","raw_affiliation_strings":["National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States","institution_ids":["https://openalex.org/I2800548410","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057786909","display_name":"Dorothy Trinh","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dorothy Trinh","raw_affiliation_strings":["National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States","institution_ids":["https://openalex.org/I2800548410","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053625504","display_name":"Deborah Whitman","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deborah Whitman","raw_affiliation_strings":["National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States","institution_ids":["https://openalex.org/I2800548410","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107600884","display_name":"Zhiyong Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiyong Lu","raw_affiliation_strings":["National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (NLM), National Institutes of Health (NIH) , 8600 Rockville Pike, Bethesda, MD 20894, United States","institution_ids":["https://openalex.org/I2800548410","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5008126200"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I2800548410"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.6331,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.6816108,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":"2024","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9754999876022339,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9706000089645386,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6228135824203491},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5999070405960083},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.5964556336402893},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5780851244926453},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.5314204692840576},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.5109047293663025},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5008976459503174},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.46305012702941895},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.45809537172317505},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.41936182975769043},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40862056612968445},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3881787657737732},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2337760627269745},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20561957359313965}],"concepts":[{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6228135824203491},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5999070405960083},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.5964556336402893},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5780851244926453},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.5314204692840576},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.5109047293663025},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5008976459503174},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.46305012702941895},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.45809537172317505},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.41936182975769043},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40862056612968445},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3881787657737732},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2337760627269745},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20561957359313965},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baae071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae071","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:39126204","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39126204","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11315767","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11315767","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"doi:10.5281/zenodo.10351213","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10351213","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/database/baae071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae071","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.4300000071525574}],"awards":[{"id":"https://openalex.org/G5150479751","display_name":null,"funder_award_id":"62302076","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5520768470","display_name":null,"funder_award_id":"DUT23RC","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1610821757","https://openalex.org/W1679133234","https://openalex.org/W2032566933","https://openalex.org/W2040298461","https://openalex.org/W2064030835","https://openalex.org/W2096525273","https://openalex.org/W2100751507","https://openalex.org/W2101727078","https://openalex.org/W2104148262","https://openalex.org/W2104608657","https://openalex.org/W2122732537","https://openalex.org/W2143902665","https://openalex.org/W2148488766","https://openalex.org/W2152228269","https://openalex.org/W2159583324","https://openalex.org/W2163303745","https://openalex.org/W2169099542","https://openalex.org/W2170189740","https://openalex.org/W2171374484","https://openalex.org/W2257876130","https://openalex.org/W2335791510","https://openalex.org/W2346452181","https://openalex.org/W2492055649","https://openalex.org/W2518463060","https://openalex.org/W2805978167","https://openalex.org/W2914171828","https://openalex.org/W2915895751","https://openalex.org/W2917019145","https://openalex.org/W2946690328","https://openalex.org/W2983166786","https://openalex.org/W2990435446","https://openalex.org/W3023249475","https://openalex.org/W3048090444","https://openalex.org/W3093194543","https://openalex.org/W3136918052","https://openalex.org/W3137481621","https://openalex.org/W3156936474","https://openalex.org/W3184890107","https://openalex.org/W3193170798","https://openalex.org/W3195285310","https://openalex.org/W4205440119","https://openalex.org/W4226265641","https://openalex.org/W4283318325","https://openalex.org/W4289274885","https://openalex.org/W4311288223","https://openalex.org/W4381573137","https://openalex.org/W4381587418","https://openalex.org/W4389105137","https://openalex.org/W4393936594","https://openalex.org/W4401413215","https://openalex.org/W6658704000","https://openalex.org/W6681542663","https://openalex.org/W6682007918","https://openalex.org/W6691217215","https://openalex.org/W6692126448","https://openalex.org/W6723600496","https://openalex.org/W6798760842"],"related_works":["https://openalex.org/W24553703","https://openalex.org/W4211000692","https://openalex.org/W4212920271","https://openalex.org/W2612240612","https://openalex.org/W4211208250","https://openalex.org/W4211054902","https://openalex.org/W2170381940","https://openalex.org/W2472351724","https://openalex.org/W3145366215","https://openalex.org/W2098932404"],"abstract_inverted_index":{"The":[0,26,223],"automatic":[1],"recognition":[2,318],"of":[3,14,22,37,49,106,138,231,243,275,306],"biomedical":[4,315,331],"relationships":[5,69,84,113,211],"is":[6,181,189,200,285,296],"an":[7],"important":[8],"step":[9],"in":[10,18,196,212,288,330],"the":[11,15,19,23,35,42,44,88,107,117,123,129,134,139,197,213,227,236,251,255,264,272,278,304,307],"semantic":[12,90],"understanding":[13],"information":[16],"contained":[17],"unstructured":[20],"text":[21,215],"published":[24,245],"literature.":[25],"BioRED":[27,229],"track":[28],"at":[29,116,271],"BioCreative":[30,265],"VIII":[31,266],"aimed":[32],"to":[33,122,133,148,153,162,167,172,248],"foster":[34],"development":[36],"such":[38],"methods":[39],"by":[40,268],"providing":[41],"participants":[43],"BioRED-BC8":[45,224,308],"corpus,":[46],"a":[47,190,241,289,311],"collection":[48],"1000":[50],"PubMed":[51,233],"documents":[52],"manually":[53,261],"curated":[54],"for":[55,156,254,263,314],"diseases,":[56],"gene/proteins,":[57],"chemicals,":[58],"cell":[59,165],"lines,":[60],"gene":[61],"variants,":[62],"and":[63,81,102,126,144,169,239,319],"species,":[64],"as":[65,67,120,127,183,235,250,310],"well":[66],"pairwise":[68],"between":[70,298],"them":[71],"which":[72],"are":[73,85,114,131,146],"disease-gene,":[74],"chemical-gene,":[75],"disease-variant,":[76],"gene-gene,":[77],"chemical-disease,":[78],"chemical-chemical,":[79],"chemical-variant,":[80],"variant-variant.":[82],"Furthermore,":[83],"categorized":[86,182],"into":[87],"following":[89],"categories:":[91],"positive":[92],"correlation,":[93,95],"negative":[94],"binding,":[96],"conversion,":[97],"drug":[98],"interaction,":[99],"comparison,":[100],"cotreatment,":[101],"association.":[103],"Unlike":[104],"most":[105],"previous":[108,228],"publicly":[109],"available":[110],"corpora,":[111],"all":[112,299],"expressed":[115,201],"document":[118],"level":[119],"opposed":[121],"sentence":[124],"level,":[125],"such,":[128],"entities":[130],"normalized":[132,147],"corresponding":[135],"concept":[136],"identifiers":[137],"standardized":[140],"vocabularies,":[141],"namely,":[142],"diseases":[143],"chemicals":[145],"MeSH,":[149],"genes":[150],"(and":[151],"proteins)":[152],"National":[154,273],"Center":[155],"Biotechnology":[157],"Information":[158],"(NCBI)":[159],"Gene,":[160],"species":[161],"NCBI":[163],"Taxonomy,":[164],"lines":[166],"Cellosaurus,":[168],"gene/protein":[170],"variants":[171],"Single":[173],"Nucleotide":[174],"Polymorphism":[175],"Database.":[176],"Finally,":[177],"each":[178,283],"annotated":[179,262,287],"relationship":[180],"'novel'":[184],"depending":[185],"on":[186],"whether":[187],"it":[188,199],"novel":[191,207],"finding":[192],"or":[193],"experimental":[194],"verification":[195],"publication":[198],"in.":[202],"This":[203,301],"distinction":[204],"helps":[205],"differentiate":[206],"findings":[208],"from":[209],"other":[210],"same":[214],"that":[216],"provides":[217],"known":[218],"facts":[219],"and/or":[220],"background":[221],"knowledge.":[222],"corpus":[225,230,309],"uses":[226],"600":[232],"articles":[234,247,259],"training":[237],"dataset":[238],"includes":[240],"set":[242],"newly":[244],"400":[246],"serve":[249],"test":[252,258],"data":[253],"challenge.":[256],"All":[257],"were":[260],"challenge":[267],"expert":[269],"biocurators":[270],"Library":[274],"Medicine,":[276],"using":[277],"original":[279],"annotation":[280,291],"guidelines,":[281],"where":[282],"article":[284],"doubly":[286],"three-round":[290],"process":[292],"until":[293],"full":[294],"agreement":[295],"reached":[297],"curators.":[300],"manuscript":[302],"details":[303],"characteristics":[305],"critical":[312],"resource":[313],"named":[316],"entity":[317],"relation":[320],"extraction.":[321],"Using":[322],"this":[323],"new":[324],"resource,":[325],"we":[326],"have":[327],"demonstrated":[328],"advancements":[329],"text-mining":[332],"algorithm":[333],"development.":[334],"Database":[335],"URL:":[336],"https://codalab.lisn.upsaclay.fr/competitions/16381.":[337]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}