{"id":"https://openalex.org/W4401413540","doi":"https://doi.org/10.1093/database/baae066","title":"Dataset of miRNA\u2013disease relations extracted from textual data using transformer-based neural networks","display_name":"Dataset of miRNA\u2013disease relations extracted from textual data using transformer-based neural networks","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4401413540","doi":"https://doi.org/10.1093/database/baae066","pmid":"https://pubmed.ncbi.nlm.nih.gov/39104284"},"language":"en","primary_location":{"id":"doi:10.1093/database/baae066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae066","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baae066","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090087547","display_name":"Sumit Madan","orcid":"https://orcid.org/0000-0001-9970-4144"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sumit Madan","raw_affiliation_strings":["Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) , Schloss Birlinghoven, 53757 Sankt Augustin, Germany"],"raw_orcid":"https://orcid.org/0000-0001-9970-4144","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) , Schloss Birlinghoven, 53757 Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009653531","display_name":"Lisa K\u00fchnel","orcid":"https://orcid.org/0000-0002-6356-6760"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]},{"id":"https://openalex.org/I4210112663","display_name":"ZB MED - Information Centre for Life Sciences","ror":"https://ror.org/0259fwx54","country_code":"DE","type":"archive","lineage":["https://openalex.org/I4210112663"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lisa K\u00fchnel","raw_affiliation_strings":["Graduate School DILS, Bielefeld Institute for Bioinformatics Infrastructure (BIBI), Faculty of Technology, Bielefeld University , Postfach 10 01 31, Bielefeld, Nordrhein-Westfalen 33501, Germany","Knowledge Management, German National Library of Medicine (ZB MED)\u2014Information Centre for Life Sciences , Friedrich-Hirzebruch-Allee 4, Bonn 53115, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School DILS, Bielefeld Institute for Bioinformatics Infrastructure (BIBI), Faculty of Technology, Bielefeld University , Postfach 10 01 31, Bielefeld, Nordrhein-Westfalen 33501, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Knowledge Management, German National Library of Medicine (ZB MED)\u2014Information Centre for Life Sciences , Friedrich-Hirzebruch-Allee 4, Bonn 53115, Germany","institution_ids":["https://openalex.org/I4210112663"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054001409","display_name":"Holger Fr\u00f6hlich","orcid":"https://orcid.org/0000-0002-5328-1243"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Holger Fr\u00f6hlich","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , Friedrich-Hirzebruch-Allee 6, Bonn 53113, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) , Schloss Birlinghoven, 53757 Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , Friedrich-Hirzebruch-Allee 6, Bonn 53113, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) , Schloss Birlinghoven, 53757 Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003139478","display_name":"Martin Hofmann\u2010Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , Friedrich-Hirzebruch-Allee 6, Bonn 53113, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) , Schloss Birlinghoven, 53757 Sankt Augustin, Germany"],"raw_orcid":"https://orcid.org/0000-0001-9012-6720","affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , Friedrich-Hirzebruch-Allee 6, Bonn 53113, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) , Schloss Birlinghoven, 53757 Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077378114","display_name":"Juliane Fluck","orcid":"https://orcid.org/0000-0003-1379-7023"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]},{"id":"https://openalex.org/I4210112663","display_name":"ZB MED - Information Centre for Life Sciences","ror":"https://ror.org/0259fwx54","country_code":"DE","type":"archive","lineage":["https://openalex.org/I4210112663"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Juliane Fluck","raw_affiliation_strings":["Graduate School DILS, Bielefeld Institute for Bioinformatics Infrastructure (BIBI), Faculty of Technology, Bielefeld University , Postfach 10 01 31, Bielefeld, Nordrhein-Westfalen 33501, Germany","Information management, Institute of Geodesy and Geoinformation, University of Bonn , Katzenburgweg 1a, Bonn 53115, Germany","Knowledge Management, German National Library of Medicine (ZB MED)\u2014Information Centre for Life Sciences , Friedrich-Hirzebruch-Allee 4, Bonn 53115, Germany"],"raw_orcid":"https://orcid.org/0000-0003-1379-7023","affiliations":[{"raw_affiliation_string":"Graduate School DILS, Bielefeld Institute for Bioinformatics Infrastructure (BIBI), Faculty of Technology, Bielefeld University , Postfach 10 01 31, Bielefeld, Nordrhein-Westfalen 33501, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Information management, Institute of Geodesy and Geoinformation, University of Bonn , Katzenburgweg 1a, Bonn 53115, Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Knowledge Management, German National Library of Medicine (ZB MED)\u2014Information Centre for Life Sciences , Friedrich-Hirzebruch-Allee 4, Bonn 53115, Germany","institution_ids":["https://openalex.org/I4210112663"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.1091,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.77364838,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"2024","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6844350099563599},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6372442245483398},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6190359592437744},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5614806413650513},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5129189491271973},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.49507227540016174},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.475471168756485},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4255402088165283},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.404457151889801},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34072399139404297},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.19225454330444336},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19190651178359985},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17513060569763184},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13009575009346008},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09621056914329529}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6844350099563599},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6372442245483398},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6190359592437744},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5614806413650513},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5129189491271973},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.49507227540016174},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.475471168756485},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4255402088165283},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.404457151889801},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34072399139404297},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.19225454330444336},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19190651178359985},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17513060569763184},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13009575009346008},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09621056914329529},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baae066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae066","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:39104284","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39104284","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11300841","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11300841","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11300841/pdf/baae066.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:pub.uni-bielefeld.de:2991878","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/record/2991878","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:publica.fraunhofer.de:publica/478305","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/478305","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/database/baae066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae066","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G6761208014","display_name":null,"funder_award_id":"031L0029 [A-C]","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":65,"referenced_works":["https://openalex.org/W1623072288","https://openalex.org/W1941318214","https://openalex.org/W1971144342","https://openalex.org/W2052217781","https://openalex.org/W2064749593","https://openalex.org/W2110666579","https://openalex.org/W2112486153","https://openalex.org/W2113207845","https://openalex.org/W2115565175","https://openalex.org/W2128768066","https://openalex.org/W2136437513","https://openalex.org/W2141869602","https://openalex.org/W2151025545","https://openalex.org/W2153138487","https://openalex.org/W2158135353","https://openalex.org/W2169099542","https://openalex.org/W2313724773","https://openalex.org/W2346452181","https://openalex.org/W2494967098","https://openalex.org/W2588025094","https://openalex.org/W2743028754","https://openalex.org/W2896457183","https://openalex.org/W2898440040","https://openalex.org/W2911489562","https://openalex.org/W2937845937","https://openalex.org/W2942692776","https://openalex.org/W2962897394","https://openalex.org/W2971621191","https://openalex.org/W2983166786","https://openalex.org/W2991814452","https://openalex.org/W2993730759","https://openalex.org/W3027982260","https://openalex.org/W3040950497","https://openalex.org/W3045332379","https://openalex.org/W3104578551","https://openalex.org/W3177709860","https://openalex.org/W3178751578","https://openalex.org/W3186641632","https://openalex.org/W4224037213","https://openalex.org/W4239943352","https://openalex.org/W4246271082","https://openalex.org/W4254522893","https://openalex.org/W4283785215","https://openalex.org/W4290615493","https://openalex.org/W4292779060","https://openalex.org/W4297399646","https://openalex.org/W4307638650","https://openalex.org/W4309111272","https://openalex.org/W4362496998","https://openalex.org/W4385245566","https://openalex.org/W4387136570","https://openalex.org/W6677088747","https://openalex.org/W6683262691","https://openalex.org/W6704842505","https://openalex.org/W6739901393","https://openalex.org/W6755207826","https://openalex.org/W6761672038","https://openalex.org/W6762581024","https://openalex.org/W6765949483","https://openalex.org/W6778883912","https://openalex.org/W6784328601","https://openalex.org/W6799586613","https://openalex.org/W6810311434","https://openalex.org/W6851073933","https://openalex.org/W7061398984"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2010229520","https://openalex.org/W4380075502"],"abstract_inverted_index":{"MicroRNAs":[0],"(miRNAs)":[1],"play":[2],"important":[3],"roles":[4],"in":[5,41,171],"post-transcriptional":[6],"processes":[7],"and":[8,32,52,144,153],"regulate":[9],"major":[10],"cellular":[11],"functions.":[12],"The":[13],"abnormal":[14],"regulation":[15],"of":[16,18,60,115,125,132],"expression":[17],"miRNAs":[19],"has":[20],"been":[21],"linked":[22],"to":[23,55],"numerous":[24],"human":[25],"diseases":[26,159],"such":[27],"as":[28],"respiratory":[29],"diseases,":[30],"cancer,":[31],"neurodegenerative":[33,158],"diseases.":[34],"Latest":[35],"miRNA-disease":[36,73,126,138,166],"associations":[37,47,74,139,167],"are":[38],"predominantly":[39],"found":[40],"unstructured":[42],"biomedical":[43,76,141],"literature.":[44,77],"Retrieving":[45],"these":[46],"manually":[48],"can":[49,163],"be":[50],"cumbersome":[51],"time-consuming":[53],"due":[54],"the":[56,80,105,123,130,133],"continuously":[57],"expanding":[58],"number":[59],"publications.":[61],"We":[62,128,147],"propose":[63],"a":[64,86,118],"deep":[65,81],"learning-based":[66],"text":[67],"mining":[68],"approach":[69,134,162],"that":[70,90,104,160],"extracts":[71],"normalized":[72],"from":[75,140],"To":[78],"train":[79],"learning":[82],"models,":[83],"we":[84],"build":[85],"new":[87,137],"training":[88],"corpus":[89],"is":[91],"extended":[92],"by":[93,135],"distant":[94],"supervision":[95],"utilizing":[96],"multiple":[97],"external":[98],"databases.":[99,173],"A":[100],"quantitative":[101,151],"evaluation":[102,154],"shows":[103],"workflow":[106],"achieves":[107],"an":[108],"area":[109],"under":[110],"receiver":[111],"operator":[112],"characteristic":[113],"curve":[114],"98%":[116],"on":[117,155],"holdout":[119],"test":[120],"set":[121],"for":[122],"detection":[124],"associations.":[127],"demonstrate":[129],"applicability":[131],"extracting":[136],"literature":[142],"(PubMed":[143],"PubMed":[145],"Central).":[146],"have":[148],"shown":[149],"through":[150],"analysis":[152],"three":[156],"different":[157],"our":[161],"effectively":[164],"extract":[165],"not":[168],"yet":[169],"available":[170],"public":[172],"Database":[174],"URL:":[175],"https://zenodo.org/records/10523046.":[176]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
