{"id":"https://openalex.org/W4399109831","doi":"https://doi.org/10.1093/database/baae045","title":"An interactive web application for exploring systemic lupus erythematosus blood transcriptomic diversity","display_name":"An interactive web application for exploring systemic lupus erythematosus blood transcriptomic diversity","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4399109831","doi":"https://doi.org/10.1093/database/baae045","pmid":"https://pubmed.ncbi.nlm.nih.gov/38805754"},"language":"en","primary_location":{"id":"doi:10.1093/database/baae045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae045","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baae045/57949304/baae045.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baae045/57949304/baae045.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042715225","display_name":"\u00c9l\u00e9onore Bettacchioli","orcid":"https://orcid.org/0009-0002-0797-8098"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I161929037","display_name":"Universit\u00e9 de Bretagne Occidentale","ror":"https://ror.org/01b8h3982","country_code":"FR","type":"education","lineage":["https://openalex.org/I161929037"]},{"id":"https://openalex.org/I4210132604","display_name":"Centre Hospitalier R\u00e9gional Universitaire de Brest","ror":"https://ror.org/03evbwn87","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210105774","https://openalex.org/I4210132604","https://openalex.org/I4210161065"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"El\u00e9onore Bettacchioli","raw_affiliation_strings":["B Lymphocytes, Autoimmunity and Immunotherapies, UMR 1227, Univ Brest, Inserm , Brest 29200, France","Brest University Hospital , Brest 29200, France"],"raw_orcid":"https://orcid.org/0009-0002-0797-8098","affiliations":[{"raw_affiliation_string":"B Lymphocytes, Autoimmunity and Immunotherapies, UMR 1227, Univ Brest, Inserm , Brest 29200, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I161929037"]},{"raw_affiliation_string":"Brest University Hospital , Brest 29200, France","institution_ids":["https://openalex.org/I4210132604"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103105175","display_name":"Laurent Chiche","orcid":"https://orcid.org/0000-0002-0582-694X"},"institutions":[{"id":"https://openalex.org/I4210109141","display_name":"H\u00f4pital Europ\u00e9en","ror":"https://ror.org/01tfhsg94","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210109141"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurent Chiche","raw_affiliation_strings":["Department of Internal Medicine, H\u00f4pital Europ\u00e9en , Marseille 13003, France"],"raw_orcid":"https://orcid.org/0000-0002-0582-694X","affiliations":[{"raw_affiliation_string":"Department of Internal Medicine, H\u00f4pital Europ\u00e9en , Marseille 13003, France","institution_ids":["https://openalex.org/I4210109141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022563979","display_name":"Damien Chaussabel","orcid":"https://orcid.org/0000-0002-6131-7242"},"institutions":[{"id":"https://openalex.org/I1301390666","display_name":"Qatar Airways (Qatar)","ror":"https://ror.org/01hx00y13","country_code":"QA","type":"company","lineage":["https://openalex.org/I1301390666"]},{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["QA","US"],"is_corresponding":false,"raw_author_name":"Damien Chaussabel","raw_affiliation_strings":["Computational Sciences Department, The Jackson Laboratory , Farmington, CT 06032, USA","Translational Medicine Division, Research Branch, Sidra Medicine , Doha 26999, Qatar","JAX - The Jackson Laboratory [Bar Harbor] (600 Main Street, \r\nBar Harbor, ME USA 04609 - United States)"],"raw_orcid":"https://orcid.org/0000-0002-6131-7242","affiliations":[{"raw_affiliation_string":"Computational Sciences Department, The Jackson Laboratory , Farmington, CT 06032, USA","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"Translational Medicine Division, Research Branch, Sidra Medicine , Doha 26999, Qatar","institution_ids":["https://openalex.org/I1301390666"]},{"raw_affiliation_string":"JAX - The Jackson Laboratory [Bar Harbor] (600 Main Street, \r\nBar Harbor, ME USA 04609 - United States)","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007242477","display_name":"Divi Cornec","orcid":"https://orcid.org/0000-0002-9159-702X"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I161929037","display_name":"Universit\u00e9 de Bretagne Occidentale","ror":"https://ror.org/01b8h3982","country_code":"FR","type":"education","lineage":["https://openalex.org/I161929037"]},{"id":"https://openalex.org/I4210132604","display_name":"Centre Hospitalier R\u00e9gional Universitaire de Brest","ror":"https://ror.org/03evbwn87","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210105774","https://openalex.org/I4210132604","https://openalex.org/I4210161065"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Divi Cornec","raw_affiliation_strings":["B Lymphocytes, Autoimmunity and Immunotherapies, UMR 1227, Univ Brest, Inserm , Brest 29200, France","Brest University Hospital , Brest 29200, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"B Lymphocytes, Autoimmunity and Immunotherapies, UMR 1227, Univ Brest, Inserm , Brest 29200, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I161929037"]},{"raw_affiliation_string":"Brest University Hospital , Brest 29200, France","institution_ids":["https://openalex.org/I4210132604"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018755487","display_name":"No\u00e9mie Jourde\u2010Chiche","orcid":"https://orcid.org/0000-0001-9315-1577"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210087487","display_name":"Assistance Publique H\u00f4pitaux de Marseille","ror":"https://ror.org/002cp4060","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210087487"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"No\u00e9mie Jourde-Chiche","raw_affiliation_strings":["C2VN, INSERM, INRAE, Aix-Marseille Universite , Marseille 13003, France","Department of Nephrology, AP-HM , Marseille 13003, France"],"raw_orcid":"https://orcid.org/0000-0001-9315-1577","affiliations":[{"raw_affiliation_string":"C2VN, INSERM, INRAE, Aix-Marseille Universite , Marseille 13003, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"Department of Nephrology, AP-HM , Marseille 13003, France","institution_ids":["https://openalex.org/I4210087487"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024123563","display_name":"Darawan Rinchai","orcid":"https://orcid.org/0000-0001-8851-7730"},"institutions":[{"id":"https://openalex.org/I1301390666","display_name":"Qatar Airways (Qatar)","ror":"https://ror.org/01hx00y13","country_code":"QA","type":"company","lineage":["https://openalex.org/I1301390666"]},{"id":"https://openalex.org/I1313298211","display_name":"St. Jude Children's Research Hospital","ror":"https://ror.org/02r3e0967","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1313298211","https://openalex.org/I2802152183"]}],"countries":["QA","US"],"is_corresponding":false,"raw_author_name":"Darawan Rinchai","raw_affiliation_strings":["Department of Infectious Diseases, St Jude\u2019s Children Research Hospital , TN, Memphis 38105, USA","Translational Medicine Division, Research Branch, Sidra Medicine , Doha 26999, Qatar"],"raw_orcid":"https://orcid.org/0000-0001-8851-7730","affiliations":[{"raw_affiliation_string":"Department of Infectious Diseases, St Jude\u2019s Children Research Hospital , TN, Memphis 38105, USA","institution_ids":["https://openalex.org/I1313298211"]},{"raw_affiliation_string":"Translational Medicine Division, Research Branch, Sidra Medicine , Doha 26999, Qatar","institution_ids":["https://openalex.org/I1301390666"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5042715225"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I161929037","https://openalex.org/I4210132604"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.4072,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.62148613,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"2024","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10308","display_name":"Systemic Lupus Erythematosus Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10308","display_name":"Systemic Lupus Erythematosus Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12955","display_name":"Atherosclerosis and Cardiovascular Diseases","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5700948238372803},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.45715612173080444},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.37222549319267273},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3502349257469177},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33186495304107666},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.33157679438591003},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20327982306480408}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5700948238372803},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.45715612173080444},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.37222549319267273},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3502349257469177},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33186495304107666},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.33157679438591003},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20327982306480408}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008180","descriptor_name":"Lupus Erythematosus, Systemic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baae045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae045","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baae045/57949304/baae045.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:38805754","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38805754","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11131423","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11131423","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-04645572v1","is_oa":false,"landing_page_url":"https://hal.univ-brest.fr/hal-04645572","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database - The journal of Biological Databases and Curation, 2024, 2024, pp.baae045. &#x27E8;10.1093/database/baae045&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:figshare.com:article/29715803","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal contribution"},{"id":"pmh:oai:mouseion.jax.org:stfb2024-1117","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2024/140","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2024","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/database/baae045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae045","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baae045/57949304/baae045.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4300000071525574}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4399109831.pdf"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1827062277","https://openalex.org/W2064999867","https://openalex.org/W2111940985","https://openalex.org/W2566241775","https://openalex.org/W2802762846","https://openalex.org/W3046237435","https://openalex.org/W3110165525","https://openalex.org/W3110809804","https://openalex.org/W3130458053","https://openalex.org/W3185209563","https://openalex.org/W4200250969","https://openalex.org/W4210274015","https://openalex.org/W4213095029","https://openalex.org/W4289844155","https://openalex.org/W4292633994","https://openalex.org/W4295422471","https://openalex.org/W4311550227","https://openalex.org/W4319348382","https://openalex.org/W4323356830","https://openalex.org/W4327549427","https://openalex.org/W6731057857","https://openalex.org/W6751785112","https://openalex.org/W6843666173"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W3108674512","https://openalex.org/W1506200166","https://openalex.org/W1489783725","https://openalex.org/W2148612803"],"abstract_inverted_index":{"In":[0],"the":[1,35,78,100,146,159],"field":[2],"of":[3,25,119,124,136,163,170],"complex":[4],"autoimmune":[5],"diseases":[6],"such":[7,60],"as":[8,61,203],"systemic":[9],"lupus":[10,128],"erythematosus":[11],"(SLE),":[12],"systems":[13],"immunology":[14],"approaches":[15],"have":[16,28],"proven":[17],"invaluable":[18],"in":[19,38,185,210,214],"translational":[20],"research":[21,36,227],"settings.":[22],"Large-scale":[23],"datasets":[24,59],"transcriptome":[26],"profiling":[27],"been":[29],"collected":[30],"and":[31,45,52,69,109,133,149,161,174,179,216,221],"made":[32],"available":[33,82,192],"to":[34,116,144,207,219,224],"community":[37],"public":[39],"repositories,":[40],"but":[41],"remain":[42],"poorly":[43],"accessible":[44],"usable":[46],"by":[47],"mainstream":[48],"researchers.":[49],"Enabling":[50],"tools":[51],"technologies":[53],"facilitating":[54],"investigators'":[55],"interaction":[56],"with":[57,99],"large-scale":[58],"user-friendly":[62],"web":[63,140,198],"applications":[64],"could":[65],"promote":[66],"data":[67,76],"reuse":[68],"foster":[70],"knowledge":[71],"discovery.":[72],"Microarray":[73],"blood":[74,211],"transcriptomic":[75],"from":[77,92,153],"LUPUCE":[79,154],"cohort":[80],"(publicly":[81],"on":[83],"Gene":[84],"Expression":[85],"Omnibus,":[86],"GSE49454),":[87],"which":[88,106,181],"comprised":[89],"157":[90],"samples":[91,114],"62":[93],"adult":[94],"SLE":[95,164],"patients,":[96],"were":[97],"analyzed":[98],"third-generation":[101],"(BloodGen3)":[102],"module":[103,110],"repertoire":[104],"framework,":[105],"comprises":[107],"modules":[108],"aggregates.":[111],"These":[112],"well-characterized":[113],"corresponded":[115],"different":[117,122,130,134,168],"levels":[118,135,169],"disease":[120],"activity,":[121],"types":[123],"flares":[125],"(including":[126],"biopsy-proven":[127],"nephritis),":[129],"auto-antibody":[131],"profiles":[132,213],"interferon":[137],"signatures.":[138],"A":[139],"application":[141,199],"was":[142],"deployed":[143],"present":[145],"aggregate-level,":[147],"module-level":[148],"gene-level":[150],"analysis":[151],"results":[152],"dataset.":[155],"Users":[156],"can":[157,200],"explore":[158,208],"similarities":[160],"heterogeneity":[162],"samples,":[165],"navigate":[166],"through":[167],"analysis,":[171],"test":[172],"hypotheses":[173],"generate":[175,225],"custom":[176],"fingerprint":[177],"grids":[178],"heatmaps,":[180],"may":[182],"be":[183,201],"used":[184],"reports":[186],"or":[187],"manuscripts.":[188],"This":[189,197],"resource":[190,206],"is":[191],"via":[193],"this":[194],"link:":[195],"https://immunology-research.shinyapps.io/LUPUCE/.":[196],"employed":[202],"a":[204],"stand-alone":[205],"changes":[209],"transcript":[212],"SLE,":[215],"their":[217],"relation":[218],"clinical":[220],"immunological":[222],"parameters,":[223],"new":[226],"hypotheses.":[228]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
