{"id":"https://openalex.org/W4399109812","doi":"https://doi.org/10.1093/database/baae039","title":"DUVEL: an active-learning annotated biomedical corpus for the recognition of oligogenic combinations","display_name":"DUVEL: an active-learning annotated biomedical corpus for the recognition of oligogenic combinations","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4399109812","doi":"https://doi.org/10.1093/database/baae039","pmid":"https://pubmed.ncbi.nlm.nih.gov/38805753"},"language":"en","primary_location":{"id":"doi:10.1093/database/baae039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baae039/57949117/baae039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baae039/57949117/baae039.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047935814","display_name":"Charlotte Nachtegael","orcid":"https://orcid.org/0000-0002-5034-8975"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Charlotte Nachtegael","raw_affiliation_strings":["Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel , Boulevard du Triomphe, CP 263, Brussels 1050, Belgium","Machine Learning Group, Universit\u00e9 Libre de Bruxelles , Boulevard du Triomphe, CP 212, Brussels 1050, Belgium"],"affiliations":[{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel , Boulevard du Triomphe, CP 263, Brussels 1050, Belgium","institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"]},{"raw_affiliation_string":"Machine Learning Group, Universit\u00e9 Libre de Bruxelles , Boulevard du Triomphe, CP 212, Brussels 1050, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008280180","display_name":"Jacopo De Stefani","orcid":"https://orcid.org/0000-0003-0257-4537"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jacopo De Stefani","raw_affiliation_strings":["Machine Learning Group, Universit\u00e9 Libre de Bruxelles , Boulevard du Triomphe, CP 212, Brussels 1050, Belgium"],"affiliations":[{"raw_affiliation_string":"Machine Learning Group, Universit\u00e9 Libre de Bruxelles , Boulevard du Triomphe, CP 212, Brussels 1050, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068026436","display_name":"Anthony Cnudde","orcid":"https://orcid.org/0000-0001-6363-6506"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Anthony Cnudde","raw_affiliation_strings":["Machine Learning Group, Universit\u00e9 Libre de Bruxelles , Boulevard du Triomphe, CP 212, Brussels 1050, Belgium","Pharmacologie, Pharmacoth\u00e9rapie et Suivi Pharmaceutique, Universit\u00e9 Libre de Bruxelles , Boulevard du Triomphe, CP 205, Brussels 1050, Belgium"],"affiliations":[{"raw_affiliation_string":"Machine Learning Group, Universit\u00e9 Libre de Bruxelles , Boulevard du Triomphe, CP 212, Brussels 1050, Belgium","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Pharmacologie, Pharmacoth\u00e9rapie et Suivi Pharmaceutique, Universit\u00e9 Libre de Bruxelles , Boulevard du Triomphe, CP 205, Brussels 1050, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003581663","display_name":"Tom Lenaerts","orcid":"https://orcid.org/0000-0003-3645-1455"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Tom Lenaerts","raw_affiliation_strings":["Artificial Intelligence Laboratory, Vrije Universiteit Brussel , Pleinlaan 2, Brussels 1050, Belgium","Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel , Boulevard du Triomphe, CP 263, Brussels 1050, Belgium","Machine Learning Group, Universit\u00e9 Libre de Bruxelles , Boulevard du Triomphe, CP 212, Brussels 1050, Belgium"],"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Laboratory, Vrije Universiteit Brussel , Pleinlaan 2, Brussels 1050, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel , Boulevard du Triomphe, CP 263, Brussels 1050, Belgium","institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"]},{"raw_affiliation_string":"Machine Learning Group, Universit\u00e9 Libre de Bruxelles , Boulevard du Triomphe, CP 212, Brussels 1050, Belgium","institution_ids":["https://openalex.org/I132053463"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5047935814"],"corresponding_institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.7154,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.69136138,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"2024","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8117166757583618},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7137738466262817},{"id":"https://openalex.org/keywords/epistasis","display_name":"Epistasis","score":0.6222909688949585},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.5342259407043457},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.47697505354881287},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4717957377433777},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4022485613822937},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.38721954822540283},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3771534860134125},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3726840019226074},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3495236337184906},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16439485549926758},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13674265146255493},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.13631707429885864}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8117166757583618},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7137738466262817},{"id":"https://openalex.org/C61727976","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Epistasis","level":3,"score":0.6222909688949585},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.5342259407043457},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.47697505354881287},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4717957377433777},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4022485613822937},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.38721954822540283},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3771534860134125},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3726840019226074},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3495236337184906},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16439485549926758},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13674265146255493},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.13631707429885864},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baae039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baae039/57949117/baae039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:38805753","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38805753","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:dipot.ulb.ac.be:2013/374632","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/374632","pdf_url":"https://dipot.ulb.ac.be/dspace/bitstream/2013/374632/1/doi_358276.pdf","source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database, 2024 (2024","raw_type":"info:ulb-repo/semantics/openurl/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11131422","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11131422","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11131422/pdf/baae039.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:vubissmart:VUBISSMART:2000:174998","is_oa":true,"landing_page_url":"https://biblio.vub.ac.be/vubir/(a14918e6-936a-4be8-a600-21b5b9549ca4).html","pdf_url":"https://biblio.vub.ac.be/vubirfiles/116982908/112056855.pdf","source":{"id":"https://openalex.org/S4306402573","display_name":"VUBIR (Vrije Universiteit Brussel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I13469542","host_organization_name":"Vrije Universiteit Brussel","host_organization_lineage":["https://openalex.org/I13469542"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/database/baae039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baae039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baae039/57949117/baae039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G3635979023","display_name":null,"funder_award_id":"35276964","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G7072270819","display_name":null,"funder_award_id":"2010235","funder_id":"https://openalex.org/F4320325905","funder_display_name":"Service Public de Wallonie"},{"id":"https://openalex.org/G7278612055","display_name":null,"funder_award_id":"2.5020.11","funder_id":"https://openalex.org/F4320321390","funder_display_name":"Fonds De La Recherche Scientifique - FNRS"},{"id":"https://openalex.org/G8432427218","display_name":null,"funder_award_id":"2020 RDIR 55b","funder_id":"https://openalex.org/F4320322852","funder_display_name":"Innoviris"},{"id":"https://openalex.org/G8594859193","display_name":null,"funder_award_id":"I002819N","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"}],"funders":[{"id":"https://openalex.org/F4320321390","display_name":"Fonds De La Recherche Scientifique - FNRS","ror":"https://ror.org/03q83t159"},{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320322852","display_name":"Innoviris","ror":"https://ror.org/04af9zr29"},{"id":"https://openalex.org/F4320325905","display_name":"Service Public de Wallonie","ror":"https://ror.org/0215gxf82"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4399109812.pdf"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1850865022","https://openalex.org/W2037789405","https://openalex.org/W2096951189","https://openalex.org/W2155518941","https://openalex.org/W2166474856","https://openalex.org/W2170189740","https://openalex.org/W2171671120","https://openalex.org/W2241877823","https://openalex.org/W2346452181","https://openalex.org/W2915623326","https://openalex.org/W2919115771","https://openalex.org/W2946690328","https://openalex.org/W2963020213","https://openalex.org/W2971258845","https://openalex.org/W2979826702","https://openalex.org/W3046375318","https://openalex.org/W3106224367","https://openalex.org/W3120223152","https://openalex.org/W3136607070","https://openalex.org/W3161374759","https://openalex.org/W3166204619","https://openalex.org/W3178755335","https://openalex.org/W4220768028","https://openalex.org/W4221153690","https://openalex.org/W4250800088","https://openalex.org/W4283318325","https://openalex.org/W4287824654","https://openalex.org/W4287854707","https://openalex.org/W4384563367","https://openalex.org/W4385572926","https://openalex.org/W4386566851","https://openalex.org/W4389105137","https://openalex.org/W4389815089","https://openalex.org/W4404784155","https://openalex.org/W6637241018","https://openalex.org/W6685319170","https://openalex.org/W6704842505","https://openalex.org/W6771917389","https://openalex.org/W6790620667","https://openalex.org/W6791735696","https://openalex.org/W6795688271","https://openalex.org/W6841103583"],"related_works":["https://openalex.org/W4377865234","https://openalex.org/W2334378031","https://openalex.org/W842810586","https://openalex.org/W2916255597","https://openalex.org/W3095980030","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W4379379356"],"abstract_inverted_index":{"While":[0],"biomedical":[1,175,262,269],"relation":[2],"extraction":[3,29],"(bioRE)":[4],"datasets":[5,23],"have":[6],"been":[7],"instrumental":[8],"in":[9,40,49,79,113,195,254],"the":[10,28,38,63,80,87,91,97,108,115,129,133,210,222,234,238,241,255],"development":[11],"of":[12,17,30,47,65,69,82,93,99,119,154,202,209,240,257],"methods":[13],"to":[14,56,74,77,106,121,171,216,233],"support":[15],"biocuration":[16],"single":[18],"variants":[19,48],"from":[20,132],"texts,":[21],"no":[22],"are":[24,54],"currently":[25],"available":[26,285],"for":[27,191,261,286],"digenic":[31,144],"or":[32,296],"even":[33],"oligogenic":[34,70],"variant":[35,71,145],"relations,":[36],"despite":[37],"reports":[39],"literature":[41],"that":[42],"epistatic":[43],"effects":[44],"between":[45,275],"combinations":[46],"different":[50],"loci":[51],"(or":[52],"genes)":[53],"important":[55,252],"understand":[57],"disease":[58],"etiologies.":[59],"This":[60,244],"work":[61],"presents":[62],"creation":[64,256],"a":[66,196,267],"unique":[67,268],"dataset":[68,197,259],"combinations,":[72,146],"geared":[73],"train":[75],"tools":[76],"help":[78],"curation":[81,263],"scientific":[83],"literature.":[84],"To":[85],"overcome":[86],"hurdles":[88],"associated":[89],"with":[90,138,158,198],"number":[92],"unlabelled":[94],"instances":[95],"and":[96,181,278,290],"cost":[98],"expertise,":[100],"active":[101],"learning":[102],"(AL)":[103],"was":[104],"used":[105,170],"optimize":[107],"annotation,":[109,192],"thus":[110],"getting":[111],"assistance":[112],"finding":[114],"most":[116],"informative":[117],"subset":[118],"samples":[120],"label.":[122],"By":[123],"pre-annotating":[124],"85":[125],"full-text":[126],"articles":[127],"containing":[128],"relevant":[130,260],"relations":[131,274],"Oligogenic":[134],"Diseases":[135],"Database":[136,293],"(OLIDA)":[137],"PubTator,":[139],"text":[140,187],"fragments":[141,153,188],"featuring":[142],"potential":[143],"i.e.":[147],"gene-variant-gene-variant,":[148],"were":[149,156,189],"extracted.":[150],"The":[151,164],"resulting":[152,165,194],"texts":[155],"annotated":[157,212],"ALAMBIC,":[159],"an":[160,251],"AL-based":[161],"annotation":[162],"platform.":[163],"dataset,":[166],"called":[167],"DUVEL,":[168],"is":[169,282],"fine-tune":[172],"four":[173],"state-of-the-art":[174],"language":[176],"models:":[177],"BiomedBERT,":[178],"BiomedBERT-large,":[179],"BioLinkBERT":[180],"BioM-BERT.":[182],"More":[183],"than":[184],"500":[185],"000":[186],"considered":[190],"finally":[193],"8442":[199],"fragments,":[200],"794":[201],"them":[203],"being":[204],"positive":[205],"instances,":[206],"covering":[207],"95%":[208],"original":[211],"articles.":[213],"When":[214],"applied":[215],"gene-variant":[217],"pair":[218],"detection,":[219],"BiomedBERT-large":[220],"achieves":[221],"highest":[223],"F1":[224],"score":[225],"(0.84)":[226],"after":[227],"fine-tuning,":[228],"demonstrating":[229],"significant":[230],"improvement":[231],"compared":[232],"non-fine-tuned":[235],"model,":[236],"underlining":[237],"relevance":[239],"DUVEL":[242,265],"dataset.":[243],"study":[245],"shows":[246],"how":[247],"AL":[248],"may":[249],"play":[250],"role":[253],"bioRE":[258],"applications.":[264],"provides":[266],"corpus":[270],"focusing":[271],"on":[272,288],"4-ary":[273],"two":[276,279],"genes":[277],"variants.":[280],"It":[281],"made":[283],"freely":[284],"research":[287],"GitHub":[289],"Hugging":[291],"Face.":[292],"URL:":[294],"https://huggingface.co/datasets/cnachteg/duvel":[295],"https://doi.org/10.57967/hf/1571.":[297]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
