{"id":"https://openalex.org/W4389579251","doi":"https://doi.org/10.1093/database/baad088","title":"Genotype and\u00a0phenotype data standardization, utilization and\u00a0integration in\u00a0the big data era for\u00a0agricultural sciences","display_name":"Genotype and\u00a0phenotype data standardization, utilization and\u00a0integration in\u00a0the big data era for\u00a0agricultural sciences","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4389579251","doi":"https://doi.org/10.1093/database/baad088","pmid":"https://pubmed.ncbi.nlm.nih.gov/38079567"},"language":"en","primary_location":{"id":"doi:10.1093/database/baad088","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad088","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad088/54255607/baad088.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad088/54255607/baad088.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069603849","display_name":"Cecilia Deng","orcid":"https://orcid.org/0000-0002-2954-762X"},"institutions":[{"id":"https://openalex.org/I1320288732","display_name":"Plant & Food Research","ror":"https://ror.org/02bchch95","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I1320288732","https://openalex.org/I4405260297"]}],"countries":["NZ"],"is_corresponding":true,"raw_author_name":"Cecilia H Deng","raw_affiliation_strings":["Molecular and Digital Breeding, New Cultivar Innovation, The New Zealand Institute for Plant and Food Research Limited , 120 Mt Albert Road, Auckland 1025, New Zealand"],"affiliations":[{"raw_affiliation_string":"Molecular and Digital Breeding, New Cultivar Innovation, The New Zealand Institute for Plant and Food Research Limited , 120 Mt Albert Road, Auckland 1025, New Zealand","institution_ids":["https://openalex.org/I1320288732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034396049","display_name":"Sushma Naithani","orcid":"https://orcid.org/0000-0001-7819-4552"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sushma Naithani","raw_affiliation_strings":["Department of Botany and Plant Pathology, Oregon State University , Corvallis, OR 97331, USA"],"affiliations":[{"raw_affiliation_string":"Department of Botany and Plant Pathology, Oregon State University , Corvallis, OR 97331, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101597727","display_name":"Sunita Kumari","orcid":"https://orcid.org/0000-0001-9166-1450"},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sunita Kumari","raw_affiliation_strings":["Cold Spring Harbor Laboratory , 1 Bungtown Rd, Cold Spring Harbor, New York, NY 11724, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory , 1 Bungtown Rd, Cold Spring Harbor, New York, NY 11724, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081626434","display_name":"Irene Cobo-Sim\u00f3n","orcid":"https://orcid.org/0000-0002-7648-7471"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Irene Cobo-Sim\u00f3n","raw_affiliation_strings":["Department of Ecology and Evolutionary Biology, University of Connecticut , Storrs, CT, USA","Institute of Forest Science (ICIFOR-INIA, CSIC) , Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, University of Connecticut , Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"Institute of Forest Science (ICIFOR-INIA, CSIC) , Madrid, Spain","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078188626","display_name":"Elsa H Quezada-Rodr\u00edguez","orcid":"https://orcid.org/0000-0001-7789-4987"},"institutions":[{"id":"https://openalex.org/I167724894","display_name":"Universidad Aut\u00f3noma de la Ciudad de M\u00e9xico","ror":"https://ror.org/04q0r6m34","country_code":"MX","type":"education","lineage":["https://openalex.org/I167724894"]},{"id":"https://openalex.org/I200362191","display_name":"Universidad Aut\u00f3noma Metropolitana","ror":"https://ror.org/02kta5139","country_code":"MX","type":"education","lineage":["https://openalex.org/I200362191"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Elsa H Quezada-Rodr\u00edguez","raw_affiliation_strings":["Centro de Ciencias de la Complejidad, Universidad Nacional Aut\u00f3noma de M\u00e9xico , Ciudad de M\u00e9xico, M\u00e9xico","Departamento de Producci\u00f3n Agr\u00edcola y Animal, Universidad Aut\u00f3noma Metropolitana-Xochimilco , Ciudad de M\u00e9xico, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Centro de Ciencias de la Complejidad, Universidad Nacional Aut\u00f3noma de M\u00e9xico , Ciudad de M\u00e9xico, M\u00e9xico","institution_ids":["https://openalex.org/I167724894","https://openalex.org/I8961855"]},{"raw_affiliation_string":"Departamento de Producci\u00f3n Agr\u00edcola y Animal, Universidad Aut\u00f3noma Metropolitana-Xochimilco , Ciudad de M\u00e9xico, M\u00e9xico","institution_ids":["https://openalex.org/I200362191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011815453","display_name":"M\u00e1ria \u0160krabi\u0161ov\u00e1","orcid":"https://orcid.org/0000-0003-2879-1062"},"institutions":[{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Maria Skrabisova","raw_affiliation_strings":["Department of Biochemistry, Faculty of Science, Palacky University , Olomouc, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Faculty of Science, Palacky University , Olomouc, Czech Republic","institution_ids":["https://openalex.org/I70703428"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011779999","display_name":"Nicholas Gladman","orcid":"https://orcid.org/0000-0002-9000-8377"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]},{"id":"https://openalex.org/I4210142299","display_name":"Robert W. Holley Center for Agriculture & Health","ror":"https://ror.org/050z40a57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210138094","https://openalex.org/I4210142299"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nick Gladman","raw_affiliation_strings":["Cold Spring Harbor Laboratory , 1 Bungtown Rd, Cold Spring Harbor, New York, NY 11724, USA","U.S. Department of Agriculture-Agricultural Research Service, NEA Robert W. Holley Center for Agriculture and Health, Cornell University , Ithaca, NY 14853, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory , 1 Bungtown Rd, Cold Spring Harbor, New York, NY 11724, USA","institution_ids":["https://openalex.org/I2750212522"]},{"raw_affiliation_string":"U.S. Department of Agriculture-Agricultural Research Service, NEA Robert W. Holley Center for Agriculture and Health, Cornell University , Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I4210142299","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040927671","display_name":"Melanie J. Correll","orcid":null},"institutions":[{"id":"https://openalex.org/I1313142568","display_name":"Florida Museum of Natural History","ror":"https://ror.org/02pjdv450","country_code":"US","type":"archive","lineage":["https://openalex.org/I1313142568","https://openalex.org/I33213144"]},{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melanie J Correll","raw_affiliation_strings":["Agricultural and Biological Engineering Department, University of Florida , 1741 Museum Rd, Gainesville, FL 32611, USA"],"affiliations":[{"raw_affiliation_string":"Agricultural and Biological Engineering Department, University of Florida , 1741 Museum Rd, Gainesville, FL 32611, USA","institution_ids":["https://openalex.org/I1313142568","https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062265363","display_name":"Akeem Babatunde Sikiru","orcid":"https://orcid.org/0000-0003-4956-7094"},"institutions":[{"id":"https://openalex.org/I18045400","display_name":"Federal University of Agriculture","ror":"https://ror.org/050s1zm26","country_code":"NG","type":"education","lineage":["https://openalex.org/I18045400"]}],"countries":["NG"],"is_corresponding":false,"raw_author_name":"Akeem Babatunde Sikiru","raw_affiliation_strings":["Federal University of Agriculture Zuru , PMB 28, Zuru, Kebbi 872101, Nigeria"],"affiliations":[{"raw_affiliation_string":"Federal University of Agriculture Zuru , PMB 28, Zuru, Kebbi 872101, Nigeria","institution_ids":["https://openalex.org/I18045400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092162290","display_name":"Olusola O. Afuwape","orcid":null},"institutions":[{"id":"https://openalex.org/I197610006","display_name":"University of Lagos","ror":"https://ror.org/05rk03822","country_code":"NG","type":"education","lineage":["https://openalex.org/I197610006"]}],"countries":["NG"],"is_corresponding":false,"raw_author_name":"Olusola O Afuwape","raw_affiliation_strings":["University of Lagos , Nigeria"],"affiliations":[{"raw_affiliation_string":"University of Lagos , Nigeria","institution_ids":["https://openalex.org/I197610006"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070344859","display_name":"Annarita Marrano","orcid":"https://orcid.org/0000-0001-9560-2706"},"institutions":[{"id":"https://openalex.org/I4210087078","display_name":"Phoenix Bioinformatics","ror":"https://ror.org/0018yg518","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210087078"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Annarita Marrano","raw_affiliation_strings":["Phoenix Bioinformatics , 39899 Balentine Drive, Suite 200, Newark, CA 94560, USA"],"affiliations":[{"raw_affiliation_string":"Phoenix Bioinformatics , 39899 Balentine Drive, Suite 200, Newark, CA 94560, USA","institution_ids":["https://openalex.org/I4210087078"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092162291","display_name":"Ines Rebollo","orcid":null},"institutions":[{"id":"https://openalex.org/I180910786","display_name":"Universidad de la Rep\u00fablica de Uruguay","ror":"https://ror.org/030bbe882","country_code":"UY","type":"education","lineage":["https://openalex.org/I180910786"]}],"countries":["UY"],"is_corresponding":false,"raw_author_name":"Ines Rebollo","raw_affiliation_strings":["Universidad de la Rep\u00fablica , Uruguay"],"affiliations":[{"raw_affiliation_string":"Universidad de la Rep\u00fablica , Uruguay","institution_ids":["https://openalex.org/I180910786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008772211","display_name":"Wentao Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I207852960","display_name":"Saskatchewan Research Council (Canada)","ror":"https://ror.org/00zfjyx93","country_code":"CA","type":"government","lineage":["https://openalex.org/I207852960"]},{"id":"https://openalex.org/I4210159778","display_name":"National Research Council Canada","ror":"https://ror.org/04mte1k06","country_code":"CA","type":"government","lineage":["https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Wentao Zhang","raw_affiliation_strings":["National Research Council Canada , 110 Gymnasium Pl, Saskatoon, Saskatchewan S7N 0W9, Canada"],"affiliations":[{"raw_affiliation_string":"National Research Council Canada , 110 Gymnasium Pl, Saskatoon, Saskatchewan S7N 0W9, Canada","institution_ids":["https://openalex.org/I207852960","https://openalex.org/I4210159778"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000749878","display_name":"Sook Jung","orcid":"https://orcid.org/0000-0003-3968-2769"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sook Jung","raw_affiliation_strings":["Department of Horticulture, Washington State University , 303c Plant Sciences Building, Pullman, WA 99164-6414, USA"],"affiliations":[{"raw_affiliation_string":"Department of Horticulture, Washington State University , 303c Plant Sciences Building, Pullman, WA 99164-6414, USA","institution_ids":["https://openalex.org/I72951846"]}]}],"institutions":[],"countries_distinct_count":8,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5069603849"],"corresponding_institution_ids":["https://openalex.org/I1320288732"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":4.4156,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.95090148,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"2023","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.620172381401062},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.5277239084243774},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5008649826049805},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.4939888119697571},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4870610535144806},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.4578815996646881},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.45369651913642883},{"id":"https://openalex.org/keywords/data-collection","display_name":"Data collection","score":0.410075306892395},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30480074882507324},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2947481870651245},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2885271906852722}],"concepts":[{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.620172381401062},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.5277239084243774},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5008649826049805},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.4939888119697571},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4870610535144806},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.4578815996646881},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.45369651913642883},{"id":"https://openalex.org/C133462117","wikidata":"https://www.wikidata.org/wiki/Q4929239","display_name":"Data collection","level":2,"score":0.410075306892395},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30480074882507324},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2947481870651245},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2885271906852722},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baad088","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad088","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad088/54255607/baad088.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:38079567","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38079567","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:repository.cshl.edu:41336","is_oa":true,"landing_page_url":null,"pdf_url":"https://repository.cshl.edu/id/eprint/41336/1/2023_Deng_Genotype_and_phenotype_data_standardization.pdf","source":{"id":"https://openalex.org/S4306402288","display_name":"Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:cisti-icist.nrc-cnrc.ca:cistinparc:3b4bcc6e-a226-4d8e-905c-523b1d6b993e","is_oa":true,"landing_page_url":"https://nrc-publications.canada.ca/eng/view/object/?id=3b4bcc6e-a226-4d8e-905c-523b1d6b993e","pdf_url":"https://nrc-publications.canada.ca/eng/view/ft/?id=3b4bcc6e-a226-4d8e-905c-523b1d6b993e","source":{"id":"https://openalex.org/S7407055245","display_name":"NPARC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:digital.csic.es:10261/349435","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/349435","pdf_url":"https://digital.csic.es/bitstream/10261/349435/1/Genotype_and_phenotype_data.pdf","source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:10712715","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10712715","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10712715/pdf/baad088.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baad088","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad088","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad088/54255607/baad088.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.7699999809265137,"display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G3171700549","display_name":null,"funder_award_id":"2126334","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6755165505","display_name":null,"funder_award_id":"award","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389579251.pdf","grobid_xml":"https://content.openalex.org/works/W4389579251.grobid-xml"},"referenced_works_count":247,"referenced_works":["https://openalex.org/W131657501","https://openalex.org/W257459350","https://openalex.org/W1481246388","https://openalex.org/W1483335432","https://openalex.org/W1488091648","https://openalex.org/W1524141331","https://openalex.org/W1530071185","https://openalex.org/W1611854178","https://openalex.org/W1784029848","https://openalex.org/W1862750369","https://openalex.org/W1896270614","https://openalex.org/W1929399095","https://openalex.org/W1971768082","https://openalex.org/W1974640383","https://openalex.org/W1978732934","https://openalex.org/W1980991473","https://openalex.org/W1981849943","https://openalex.org/W1988634187","https://openalex.org/W1995403127","https://openalex.org/W2003423696","https://openalex.org/W2004149738","https://openalex.org/W2020541351","https://openalex.org/W2022003905","https://openalex.org/W2022351903","https://openalex.org/W2026814125","https://openalex.org/W2026952932","https://openalex.org/W2029541254","https://openalex.org/W2029575047","https://openalex.org/W2039531605","https://openalex.org/W2047352138","https://openalex.org/W2055058567","https://openalex.org/W2058401000","https://openalex.org/W2058507386","https://openalex.org/W2059031382","https://openalex.org/W2059206901","https://openalex.org/W2063256031","https://openalex.org/W2064676287","https://openalex.org/W2065953174","https://openalex.org/W2072849975","https://openalex.org/W2077545398","https://openalex.org/W2083042078","https://openalex.org/W2083362294","https://openalex.org/W2084821192","https://openalex.org/W2086702905","https://openalex.org/W2088412784","https://openalex.org/W2094819114","https://openalex.org/W2095882149","https://openalex.org/W2097311303","https://openalex.org/W2097591011","https://openalex.org/W2107625277","https://openalex.org/W2114260819","https://openalex.org/W2115521447","https://openalex.org/W2116041602","https://openalex.org/W2116423824","https://openalex.org/W2120141270","https://openalex.org/W2122101756","https://openalex.org/W2122245399","https://openalex.org/W2128307328","https://openalex.org/W2128831025","https://openalex.org/W2129390057","https://openalex.org/W2132981035","https://openalex.org/W2138270253","https://openalex.org/W2138398659","https://openalex.org/W2139429734","https://openalex.org/W2141292707","https://openalex.org/W2141590520","https://openalex.org/W2142097792","https://openalex.org/W2142625854","https://openalex.org/W2144914982","https://openalex.org/W2146719646","https://openalex.org/W2148048450","https://openalex.org/W2148084209","https://openalex.org/W2148111377","https://openalex.org/W2149992227","https://openalex.org/W2150413686","https://openalex.org/W2152047266","https://openalex.org/W2153804545","https://openalex.org/W2154698514","https://openalex.org/W2155390244","https://openalex.org/W2157150618","https://openalex.org/W2159474015","https://openalex.org/W2161811833","https://openalex.org/W2162539049","https://openalex.org/W2163924952","https://openalex.org/W2165446840","https://openalex.org/W2166022874","https://openalex.org/W2168452914","https://openalex.org/W2169438093","https://openalex.org/W2170648600","https://openalex.org/W2171734521","https://openalex.org/W2173435961","https://openalex.org/W2196157991","https://openalex.org/W2212365374","https://openalex.org/W2224343643","https://openalex.org/W2263904841","https://openalex.org/W2263977295","https://openalex.org/W2302501749","https://openalex.org/W2335979086","https://openalex.org/W2341128841","https://openalex.org/W2415816939","https://openalex.org/W2471451357","https://openalex.org/W2514630101","https://openalex.org/W2514797090","https://openalex.org/W2547307926","https://openalex.org/W2549937192","https://openalex.org/W2557925011","https://openalex.org/W2560322684","https://openalex.org/W2564295548","https://openalex.org/W2564688219","https://openalex.org/W2588316293","https://openalex.org/W2591790584","https://openalex.org/W2598446296","https://openalex.org/W2616754551","https://openalex.org/W2725988230","https://openalex.org/W2741609014","https://openalex.org/W2755904201","https://openalex.org/W2760544538","https://openalex.org/W2765086592","https://openalex.org/W2765284763","https://openalex.org/W2766045568","https://openalex.org/W2769436351","https://openalex.org/W2789833233","https://openalex.org/W2790906283","https://openalex.org/W2792108715","https://openalex.org/W2795697644","https://openalex.org/W2801006204","https://openalex.org/W2801402018","https://openalex.org/W2807577035","https://openalex.org/W2808053518","https://openalex.org/W2824019483","https://openalex.org/W2887216340","https://openalex.org/W2891264165","https://openalex.org/W2891678595","https://openalex.org/W2892011168","https://openalex.org/W2896740594","https://openalex.org/W2897943239","https://openalex.org/W2898365338","https://openalex.org/W2898695858","https://openalex.org/W2899669628","https://openalex.org/W2901303766","https://openalex.org/W2910184090","https://openalex.org/W2910442120","https://openalex.org/W2910730299","https://openalex.org/W2912300582","https://openalex.org/W2915050614","https://openalex.org/W2934450419","https://openalex.org/W2938826237","https://openalex.org/W2946315735","https://openalex.org/W2947838964","https://openalex.org/W2948359000","https://openalex.org/W2949423018","https://openalex.org/W2950993016","https://openalex.org/W2951351160","https://openalex.org/W2951538248","https://openalex.org/W2957462308","https://openalex.org/W2960369874","https://openalex.org/W2967322002","https://openalex.org/W2975018492","https://openalex.org/W2981780393","https://openalex.org/W2982381523","https://openalex.org/W2983606184","https://openalex.org/W2985948685","https://openalex.org/W2986448893","https://openalex.org/W2988699795","https://openalex.org/W2989362889","https://openalex.org/W2990259604","https://openalex.org/W2991528650","https://openalex.org/W2993339851","https://openalex.org/W2997639658","https://openalex.org/W2999861740","https://openalex.org/W3002058427","https://openalex.org/W3006789725","https://openalex.org/W3011013375","https://openalex.org/W3036928921","https://openalex.org/W3046648393","https://openalex.org/W3104343176","https://openalex.org/W3106120778","https://openalex.org/W3108384295","https://openalex.org/W3109342845","https://openalex.org/W3112958226","https://openalex.org/W3120048360","https://openalex.org/W3120279605","https://openalex.org/W3121612978","https://openalex.org/W3131055609","https://openalex.org/W3131765257","https://openalex.org/W3132412740","https://openalex.org/W3137279194","https://openalex.org/W3163425692","https://openalex.org/W3164503333","https://openalex.org/W3165944486","https://openalex.org/W3167798738","https://openalex.org/W3169325684","https://openalex.org/W3169369675","https://openalex.org/W3171985122","https://openalex.org/W3183700437","https://openalex.org/W3194813944","https://openalex.org/W3195285310","https://openalex.org/W3202927809","https://openalex.org/W3206133642","https://openalex.org/W3210531406","https://openalex.org/W3211488171","https://openalex.org/W3213101281","https://openalex.org/W3213993060","https://openalex.org/W3214020344","https://openalex.org/W4200473540","https://openalex.org/W4200608270","https://openalex.org/W4205842040","https://openalex.org/W4206471153","https://openalex.org/W4206481898","https://openalex.org/W4210345393","https://openalex.org/W4210512724","https://openalex.org/W4210913867","https://openalex.org/W4223652661","https://openalex.org/W4225482312","https://openalex.org/W4226165651","https://openalex.org/W4233925072","https://openalex.org/W4241347156","https://openalex.org/W4244586511","https://openalex.org/W4250174584","https://openalex.org/W4251969446","https://openalex.org/W4252553099","https://openalex.org/W4255931921","https://openalex.org/W4281565931","https://openalex.org/W4282051998","https://openalex.org/W4289524300","https://openalex.org/W4293101905","https://openalex.org/W4306292873","https://openalex.org/W4309908811","https://openalex.org/W4311459760","https://openalex.org/W4315707395","https://openalex.org/W4318767952","https://openalex.org/W4381052898","https://openalex.org/W4385442185","https://openalex.org/W6628708307","https://openalex.org/W6629223789","https://openalex.org/W6664302389","https://openalex.org/W6683737153","https://openalex.org/W6749390253","https://openalex.org/W6765846115","https://openalex.org/W6769684831","https://openalex.org/W6769692851","https://openalex.org/W6770332943","https://openalex.org/W6770777444","https://openalex.org/W6772244820","https://openalex.org/W6807709267","https://openalex.org/W6837675273","https://openalex.org/W6849608530"],"related_works":["https://openalex.org/W2378767206","https://openalex.org/W1540871478","https://openalex.org/W328308450","https://openalex.org/W282641168","https://openalex.org/W2376963063","https://openalex.org/W2066396794","https://openalex.org/W2366734808","https://openalex.org/W2002476357","https://openalex.org/W2391444248","https://openalex.org/W2281299355"],"abstract_inverted_index":{"Large-scale":[0],"genotype":[1,92,206],"and":[2,16,18,30,42,56,83,89,93,100,116,135,143,161,192,198,201,215,227,240],"phenotype":[3,94,209],"data":[4,81,95,137,151,182,190,207,210,226],"have":[5],"been":[6],"increasingly":[7],"generated":[8],"to":[9,78,96,121,204,211,216,230],"identify":[10],"genetic":[11],"markers,":[12],"understand":[13,97],"gene":[14,163],"function":[15],"evolution":[17],"facilitate":[19],"genomic":[20,105],"selection.":[21],"These":[22],"datasets":[23,49,115],"hold":[24],"immense":[25],"value":[26],"for":[27,37,133,173,178,189,196],"both":[28],"current":[29,80],"future":[31],"studies,":[32],"as":[33,70,138,140],"they":[34],"are":[35,242],"vital":[36],"crop":[38],"breeding,":[39],"yield":[40],"improvement":[41],"overall":[43],"agricultural":[44],"sustainability.":[45],"However,":[46],"integrating":[47],"these":[48],"from":[50],"heterogeneous":[51,150],"sources":[52],"presents":[53],"significant":[54],"challenges":[55,101],"hinders":[57],"their":[58],"effective":[59],"utilization.":[60],"We":[61],"established":[62],"the":[63,74,98,103,147,153,156,225,231],"Genotype-Phenotype":[64],"Working":[65],"Group":[66],"in":[67,152],"November":[68],"2021":[69],"a":[71,171],"part":[72],"of":[73,91,102,114,149,155,186],"AgBioData":[75],"Consortium":[76],"(https://www.agbiodata.org)":[77],"review":[79],"types":[82,113],"resources":[84,195,228],"that":[85,145,237],"support":[86,177],"archiving,":[87],"analysis":[88,200],"visualization":[90,202],"needs":[99,241],"plant":[104,232],"research":[106,233],"community.":[107],"For":[108],"2021-22,":[109],"we":[110,127,169,235],"identified":[111],"different":[112],"examined":[117],"metadata":[118],"annotations":[119],"related":[120],"experimental":[122],"design/methods/sample":[123],"collection,":[124],"etc.":[125],"Furthermore,":[126],"thoroughly":[128],"reviewed":[129],"publicly":[130],"funded":[131],"repositories":[132],"raw":[134],"processed":[136],"well":[139],"secondary":[141],"databases":[142],"knowledgebases":[144],"enable":[146],"integration":[148],"context":[154],"genome":[157],"browser,":[158],"pathway":[159],"networks":[160],"tissue-specific":[162],"expression.":[164],"Based":[165],"on":[166,247],"our":[167],"survey,":[168],"recommend":[170],"need":[172],"(i)":[174],"additional":[175],"infrastructural":[176],"archiving":[179],"many":[180],"new":[181],"types,":[183],"(ii)":[184],"development":[185],"community":[187],"standards":[188],"annotation":[191],"formatting,":[193],"(iii)":[194],"biocuration":[197],"(iv)":[199],"tools":[203],"connect":[205],"with":[208],"enhance":[212],"knowledge":[213],"synthesis":[214],"foster":[217],"translational":[218],"research.":[219],"Although":[220],"this":[221],"paper":[222],"only":[223],"covers":[224],"relevant":[229],"community,":[234],"expect":[236],"similar":[238],"issues":[239],"shared":[243],"by":[244],"researchers":[245],"working":[246],"animals.":[248],"Database":[249],"URL:":[250],"https://www.agbiodata.org.":[251]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
