{"id":"https://openalex.org/W4389105237","doi":"https://doi.org/10.1093/database/baad086","title":"iCAZyGFADB: an insect CAZyme and\u00a0gene function annotation database","display_name":"iCAZyGFADB: an insect CAZyme and\u00a0gene function annotation database","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4389105237","doi":"https://doi.org/10.1093/database/baad086","pmid":"https://pubmed.ncbi.nlm.nih.gov/38015957"},"language":"en","primary_location":{"id":"doi:10.1093/database/baad086","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad086","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad086/53896266/baad086.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad086/53896266/baad086.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089556219","display_name":"Chun Fu","orcid":"https://orcid.org/0000-0003-0373-5275"},"institutions":[{"id":"https://openalex.org/I2802584641","display_name":"Leshan Normal University","ror":"https://ror.org/036cvz290","country_code":"CN","type":"education","lineage":["https://openalex.org/I2802584641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun Fu","raw_affiliation_strings":["Key Laboratory of Sichuan Province for Bamboo Pests Control and Resource Development, Leshan Normal University , No. 778 Binhe Road, Shizhong District, Leshan, Sichuan 614000, China"],"raw_orcid":"https://orcid.org/0000-0003-0373-5275","affiliations":[{"raw_affiliation_string":"Key Laboratory of Sichuan Province for Bamboo Pests Control and Resource Development, Leshan Normal University , No. 778 Binhe Road, Shizhong District, Leshan, Sichuan 614000, China","institution_ids":["https://openalex.org/I2802584641"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038006249","display_name":"Yaojun Yang","orcid":"https://orcid.org/0000-0002-6141-7622"},"institutions":[{"id":"https://openalex.org/I2802584641","display_name":"Leshan Normal University","ror":"https://ror.org/036cvz290","country_code":"CN","type":"education","lineage":["https://openalex.org/I2802584641"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"YaoJun Yang","raw_affiliation_strings":["Key Laboratory of Sichuan Province for Bamboo Pests Control and Resource Development, Leshan Normal University , No. 778 Binhe Road, Shizhong District, Leshan, Sichuan 614000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Sichuan Province for Bamboo Pests Control and Resource Development, Leshan Normal University , No. 778 Binhe Road, Shizhong District, Leshan, Sichuan 614000, China","institution_ids":["https://openalex.org/I2802584641"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5038006249"],"corresponding_institution_ids":["https://openalex.org/I2802584641"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.2867,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.64169168,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"2023","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9517999887466431,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9495000243186951,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7929757237434387},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5614620447158813},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.535385251045227},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.44765907526016235},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3935648202896118},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36694324016571045},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3425101041793823},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2565706968307495}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7929757237434387},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5614620447158813},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.535385251045227},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.44765907526016235},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3935648202896118},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36694324016571045},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3425101041793823},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2565706968307495}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baad086","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad086","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad086/53896266/baad086.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:38015957","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38015957","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10684042","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10684042","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10684042/pdf/baad086.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baad086","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad086","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad086/53896266/baad086.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1739046980","display_name":"\u957f\u8db3\u5927\u7af9\u8c61\u79cd\u7fa4\u6570\u91cf\u7684\u81ea\u7136\u8c03\u63a7\u673a\u5236","funder_award_id":"31470655","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7448207612","display_name":null,"funder_award_id":"2022YFD1901405","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389105237.pdf","grobid_xml":"https://content.openalex.org/works/W4389105237.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W24553703","https://openalex.org/W2045204781","https://openalex.org/W2102652793","https://openalex.org/W2103017472","https://openalex.org/W2122559203","https://openalex.org/W2135621733","https://openalex.org/W2159482845","https://openalex.org/W2606024116","https://openalex.org/W2803787045","https://openalex.org/W2900629010","https://openalex.org/W3095583226","https://openalex.org/W3100584158","https://openalex.org/W3202646169","https://openalex.org/W4247927165","https://openalex.org/W4294216483","https://openalex.org/W4307034884","https://openalex.org/W4308972645","https://openalex.org/W4311572576","https://openalex.org/W4313414451","https://openalex.org/W4323036511","https://openalex.org/W4383186377","https://openalex.org/W6600995781","https://openalex.org/W6849832982"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W4405124681","https://openalex.org/W1533177136","https://openalex.org/W2464653720"],"abstract_inverted_index":{"With":[0],"the":[1,69,155,185,195,207,214,218,237,245,259],"continuous":[2],"upgrading":[3],"of":[4,11,25,32,44,71,93,100,107,139,154,180,209,222,239,247],"high-throughput":[5],"sequencing":[6],"technology,":[7],"a":[8,30,42,55,181],"large":[9],"amount":[10],"biological":[12,26,72,141],"genome":[13,73,240],"data":[14],"has":[15,128],"been":[16],"deciphered":[17],"and":[18,37,95,120,145,159,177,220,234,243],"published.":[19],"The":[20],"research":[21,233,242],"on":[22],"functional":[23,74,251],"genes":[24],"genomes":[27],"urgently":[28],"needs":[29,70],"collection":[31],"service":[33],"websites":[34],"with":[35],"user-friendly":[36],"full":[38],"annotation":[39,47,62,80,119,138,152,208,232,252],"functions":[40,153,169,212],"for":[41,203,229],"variety":[43],"gene":[45,60,78,136,151,168,211,230],"function":[46,61,79,137,231,241],"tools.":[48],"In":[49],"this":[50,256],"study,":[51],"iCAZyGFADB,":[52],"which":[53],"is":[54,133],"database":[56,224,257],"website":[57,156],"integrating":[58],"nine":[59,77],"tools,":[63],"was":[64],"perfectly":[65],"developed":[66],"to":[67,135,161,199,201,205],"meet":[68],"annotation.":[75,126],"Its":[76],"tools":[81],"were":[82],"Carbohydrate-Active":[83],"Enzymes":[84],"(CAZyme)":[85],"annotation,":[86,90,98,104,113,115,117],"Gene":[87,102],"Ontology":[88],"(GO)":[89],"Kyoto":[91],"Encyclopedia":[92],"Genes":[94],"Genomes":[96],"(KEGG)":[97],"Cluster":[99],"Orthologous":[101,110],"(COG)":[103],"Evolutionary":[105],"Genealogy":[106],"Genes:":[108],"Non-supervised":[109],"Groups":[111],"(eggNOG)":[112],"SwissProt":[114],"Pfam":[116],"KOG":[118,176],"Animal":[121],"Transcription":[122],"Factor":[123],"DataBase":[124],"(AnimalTFDB)":[125],"It":[127],"three":[129],"advantages.":[130],"First,":[131],"it":[132,164],"superior":[134],"other":[140,189],"cloud":[142,190],"analysis":[143],"platforms":[144,191],"runs":[146],"very":[147],"fast.":[148],"Second,":[149],"all":[150],"are":[157],"free":[158],"open":[160,202],"users.":[162],"Third,":[163],"can":[165,254],"annotate":[166],"eight":[167,210],"(GO,":[170],"KEGG,":[171],"COG,":[172],"eggNOG,":[173],"SwissProt,":[174],"Pfam,":[175],"AnimalTFDB":[178],"annotation)":[179],"single":[182],"species":[183],"at":[184,213],"same":[186,215],"time,":[187],"while":[188],"do":[192],"not":[193],"have":[194],"ability":[196],"or":[197],"need":[198],"charge":[200],"users":[204],"complete":[206],"time.":[216],"Moreover,":[217],"development":[219],"operation":[221],"our":[223],"will":[225],"provide":[226],"great":[227],"help":[228],"significantly":[235],"improve":[236],"efficiency":[238],"reduce":[244],"cost":[246],"bioinformatics":[248],"analysis.":[249],"Genomic":[250],"researchers":[253],"access":[255],"through":[258],"following":[260],"website:":[261],"http://www.icazygfadb.org.cn/.":[262,265],"Database":[263],"URL:":[264]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
