{"id":"https://openalex.org/W4389105137","doi":"https://doi.org/10.1093/database/baad080","title":"Overview of\u00a0DrugProt task at BioCreative VII: data and\u00a0methods for\u00a0large-scale text mining and\u00a0knowledge graph generation of\u00a0heterogenous chemical\u2013protein relations","display_name":"Overview of\u00a0DrugProt task at BioCreative VII: data and\u00a0methods for\u00a0large-scale text mining and\u00a0knowledge graph generation of\u00a0heterogenous chemical\u2013protein relations","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4389105137","doi":"https://doi.org/10.1093/database/baad080","pmid":"https://pubmed.ncbi.nlm.nih.gov/38015956"},"language":"en","primary_location":{"id":"doi:10.1093/database/baad080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad080","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad080/53895851/baad080.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad080/53895851/baad080.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051147636","display_name":"Antonio Miranda-Escalada","orcid":"https://orcid.org/0000-0002-5654-001X"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Antonio Miranda-Escalada","raw_affiliation_strings":["Life Sciences Department, Barcelona Supercomputing Center , Barcelona 08034, Spain"],"raw_orcid":"https://orcid.org/0000-0002-5654-001X","affiliations":[{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center , Barcelona 08034, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086256360","display_name":"Farrokh Mehryary","orcid":"https://orcid.org/0000-0002-5555-2828"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Farrokh Mehryary","raw_affiliation_strings":["TurkuNLP Group, Department of Computing, University of Turku , Turku 20014, Finland"],"raw_orcid":"https://orcid.org/0000-0002-5555-2828","affiliations":[{"raw_affiliation_string":"TurkuNLP Group, Department of Computing, University of Turku , Turku 20014, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018656314","display_name":"Jouni Luoma","orcid":"https://orcid.org/0000-0001-9286-1868"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jouni Luoma","raw_affiliation_strings":["TurkuNLP Group, Department of Computing, University of Turku , Turku 20014, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TurkuNLP Group, Department of Computing, University of Turku , Turku 20014, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025269608","display_name":"Darryl Estrada-Zavala","orcid":null},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Darryl Estrada-Zavala","raw_affiliation_strings":["Life Sciences Department, Barcelona Supercomputing Center , Barcelona 08034, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center , Barcelona 08034, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014844779","display_name":"Luis Gasc\u00f3","orcid":"https://orcid.org/0000-0002-4976-9879"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Luis Gasco","raw_affiliation_strings":["Life Sciences Department, Barcelona Supercomputing Center , Barcelona 08034, Spain"],"raw_orcid":"https://orcid.org/0000-0002-4976-9879","affiliations":[{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center , Barcelona 08034, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066925770","display_name":"Sampo Pyysalo","orcid":"https://orcid.org/0000-0002-6279-5000"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Sampo Pyysalo","raw_affiliation_strings":["TurkuNLP Group, Department of Computing, University of Turku , Turku 20014, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TurkuNLP Group, Department of Computing, University of Turku , Turku 20014, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alfonso Valencia","raw_affiliation_strings":["Life Sciences Department, Barcelona Supercomputing Center , Barcelona 08034, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center , Barcelona 08034, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007203127","display_name":"Martin Krallinger","orcid":"https://orcid.org/0000-0002-2646-8782"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Martin Krallinger","raw_affiliation_strings":["Life Sciences Department, Barcelona Supercomputing Center , Barcelona 08034, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center , Barcelona 08034, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":3.3636,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.92912478,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"2023","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.796371340751648},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7378934621810913},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.6547517776489258},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.6073805093765259},{"id":"https://openalex.org/keywords/granularity","display_name":"Granularity","score":0.584714949131012},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5362671613693237},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4981229305267334},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4856923520565033},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.44152650237083435},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4350185990333557},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.42280787229537964},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.41982728242874146},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.39950138330459595},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37700384855270386},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3713906407356262},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3257834017276764},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1984511911869049},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.10863980650901794},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10274791717529297}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.796371340751648},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7378934621810913},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.6547517776489258},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.6073805093765259},{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.584714949131012},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5362671613693237},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4981229305267334},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4856923520565033},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.44152650237083435},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4350185990333557},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.42280787229537964},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.41982728242874146},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.39950138330459595},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37700384855270386},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3713906407356262},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3257834017276764},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1984511911869049},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.10863980650901794},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10274791717529297},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baad080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad080","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad080/53895851/baad080.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:38015956","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38015956","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:upcommons.upc.edu:2117/401480","is_oa":true,"landing_page_url":"https://hdl.handle.net/2117/401480","pdf_url":"https://upcommons.upc.edu/bitstreams/4a4e2dc2-df18-4bcd-893a-ffeadc9bf2b3/download","source":{"id":"https://openalex.org/S4377196262","display_name":"UPCommons institutional repository (Universitat Polit\u00e8cnica de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9617848","host_organization_name":"Universitat Polit\u00e8cnica de Catalunya","host_organization_lineage":["https://openalex.org/I9617848"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10683943","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10683943","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10683943/pdf/baad080.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:www.utupub.fi:10024/185616","is_oa":false,"landing_page_url":"https://www.utupub.fi/handle/10024/185616","pdf_url":null,"source":{"id":"https://openalex.org/S4306402470","display_name":"UTUPub (University of Turku)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I155660961","host_organization_name":"University of Turku","host_organization_lineage":["https://openalex.org/I155660961"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1093/database/baad080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad080","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad080/53895851/baad080.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3242906855","display_name":null,"funder_award_id":"101058779","funder_id":"https://openalex.org/F4320334322","funder_display_name":"HORIZON EUROPE Framework Programme"},{"id":"https://openalex.org/G7338621038","display_name":"Advanced Database for Biomaterials with Data Analysis and Visualisation Tools extended by a Marketplace with Digital Advisors","funder_award_id":"101058779","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320334322","display_name":"HORIZON EUROPE Framework Programme","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4389105137.pdf"},"referenced_works_count":87,"referenced_works":["https://openalex.org/W77347155","https://openalex.org/W1757434866","https://openalex.org/W1850642846","https://openalex.org/W1850865022","https://openalex.org/W1894267660","https://openalex.org/W1975875968","https://openalex.org/W2016976521","https://openalex.org/W2023736097","https://openalex.org/W2047782770","https://openalex.org/W2048140075","https://openalex.org/W2049240985","https://openalex.org/W2058856481","https://openalex.org/W2060515712","https://openalex.org/W2064030835","https://openalex.org/W2096252540","https://openalex.org/W2101727078","https://openalex.org/W2117770626","https://openalex.org/W2131347449","https://openalex.org/W2145870108","https://openalex.org/W2148488766","https://openalex.org/W2149369282","https://openalex.org/W2154142897","https://openalex.org/W2160805010","https://openalex.org/W2162590473","https://openalex.org/W2163107094","https://openalex.org/W2169032959","https://openalex.org/W2170146596","https://openalex.org/W2170189740","https://openalex.org/W2171507794","https://openalex.org/W2194756172","https://openalex.org/W2252094598","https://openalex.org/W2273982008","https://openalex.org/W2304703600","https://openalex.org/W2314420468","https://openalex.org/W2346452181","https://openalex.org/W2558999090","https://openalex.org/W2755814313","https://openalex.org/W2775747321","https://openalex.org/W2786559064","https://openalex.org/W2787229753","https://openalex.org/W2807245502","https://openalex.org/W2883380892","https://openalex.org/W2884001105","https://openalex.org/W2896457183","https://openalex.org/W2911489562","https://openalex.org/W2963078194","https://openalex.org/W2970771982","https://openalex.org/W2971258845","https://openalex.org/W3015725310","https://openalex.org/W3046375318","https://openalex.org/W3088646411","https://openalex.org/W3089225264","https://openalex.org/W3115095335","https://openalex.org/W3127411378","https://openalex.org/W3167906655","https://openalex.org/W3208762930","https://openalex.org/W3209883279","https://openalex.org/W4200181219","https://openalex.org/W4200632778","https://openalex.org/W4200634613","https://openalex.org/W4308171175","https://openalex.org/W4385751887","https://openalex.org/W6638063974","https://openalex.org/W6662590293","https://openalex.org/W6662745520","https://openalex.org/W6682007918","https://openalex.org/W6683883671","https://openalex.org/W6691661800","https://openalex.org/W6694302562","https://openalex.org/W6704842505","https://openalex.org/W6744002169","https://openalex.org/W6747425915","https://openalex.org/W6748512862","https://openalex.org/W6752162615","https://openalex.org/W6755207826","https://openalex.org/W6776675368","https://openalex.org/W6779489682","https://openalex.org/W6780646372","https://openalex.org/W6781031682","https://openalex.org/W6783332607","https://openalex.org/W6790100319","https://openalex.org/W6802887717","https://openalex.org/W6803730284","https://openalex.org/W6804124849","https://openalex.org/W6805432663","https://openalex.org/W6806095094","https://openalex.org/W6981250039"],"related_works":["https://openalex.org/W2352298027","https://openalex.org/W4319940250","https://openalex.org/W842810586","https://openalex.org/W2092919065","https://openalex.org/W4236762297","https://openalex.org/W3138801416","https://openalex.org/W2369351710","https://openalex.org/W2594363579","https://openalex.org/W2169232658","https://openalex.org/W2444550338"],"abstract_inverted_index":{"It":[0],"is":[1,24,41],"getting":[2],"increasingly":[3],"challenging":[4],"to":[5,122,131,133,191,279],"efficiently":[6],"exploit":[7],"drug-related":[8],"information":[9,30],"described":[10,284],"in":[11,60,285],"the":[12,22,28,61,67,83,90,93,98,124,134,163,215,226,269,272,281,286],"growing":[13],"amount":[14],"of":[15,34,63,92,105,126,136,138,150,268,271],"scientific":[16],"literature.":[17],"Indeed,":[18],"for":[19,43,214,225,260],"drug-gene/protein":[20,64,113],"interactions,":[21],"challenge":[23],"even":[25],"bigger,":[26],"considering":[27],"scattered":[29],"sources":[31],"and":[32,74,140,155,166,170,219,251,258],"types":[33],"interactions.":[35,114,291],"However,":[36],"their":[37,143],"systematic,":[38],"large-scale":[39,120],"exploitation":[40],"key":[42],"developing":[44],"tools,":[45],"impacting":[46],"knowledge":[47,148,273],"fields":[48],"as":[49,51,174,245,254,256],"diverse":[50],"drug":[52,175],"design":[53],"or":[54,177,247,288],"metabolic":[55],"pathway":[56],"research.":[57],"Previous":[58],"efforts":[59],"extraction":[62,196],"interactions":[65],"from":[66,203],"literature":[68],"did":[69],"not":[70],"address":[71],"these":[72],"scalability":[73],"granularity":[75],"issues.":[76],"To":[77],"tackle":[78],"them,":[79],"we":[80,95,182],"have":[81,96,116,183,275],"organized":[82],"DrugProt":[84,99,217,229],"track":[85,121],"at":[86],"BioCreative":[87],"VII.":[88],"In":[89],"context":[91],"track,":[94,218],"released":[97],"Gold":[100],"Standard":[101],"corpus,":[102],"a":[103,118,145,185],"collection":[104],"5000":[106],"PubMed":[107],"abstracts,":[108],"manually":[109],"annotated":[110],"with":[111,142],"granular":[112],"We":[115],"proposed":[117],"novel":[119],"evaluate":[123,193],"capacity":[125],"natural":[127],"language":[128,241],"processing":[129],"systems":[130,197],"scale":[132],"range":[135],"millions":[137],"documents,":[139],"generate":[141],"predictions":[144],"silver":[146],"standard":[147],"graph":[149,274],"53":[151],"993":[152],"602":[153],"nodes":[154],"19":[156],"367":[157],"406":[158],"edges.":[159],"Its":[160],"use":[161],"exceeds":[162],"shared":[164],"task":[165],"points":[167],"toward":[168],"pharmacological":[169],"biological":[171],"applications":[172],"such":[173,244],"discovery":[176],"continuous":[178],"database":[179],"curation.":[180],"Finally,":[181,264],"created":[184],"persistent":[186],"evaluation":[187],"scenario":[188],"on":[189,238],"CodaLab":[190],"continuously":[192],"new":[194],"relation":[195,262],"that":[198],"may":[199],"arise.":[200],"Thirty":[201],"teams":[202,221],"four":[204],"continents,":[205],"which":[206],"involved":[207],"110":[208],"people,":[209],"sent":[210],"107":[211],"submission":[212],"runs":[213,224],"Main":[216],"nine":[220],"submitted":[222],"21":[223],"Large":[227],"Scale":[228],"track.":[230],"Most":[231],"participants":[232],"implemented":[233],"deep":[234],"learning":[235],"approaches":[236],"based":[237],"pretrained":[239],"transformer-like":[240],"models":[242],"(LMs)":[243],"BERT":[246],"BioBERT,":[248],"reaching":[249],"precision":[250],"recall":[252],"values":[253],"high":[255],"0.9167":[257],"0.9542":[259],"some":[261,265],"types.":[263],"initial":[266],"explorations":[267],"applicability":[270],"shown":[276],"its":[277],"potential":[278],"explore":[280],"chemical-protein":[282],"relations":[283],"literature,":[287],"chemical":[289],"compound-enzyme":[290],"Database":[292],"URL:":[293],"https://doi.org/10.5281/zenodo.4955410.":[294]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
