{"id":"https://openalex.org/W4387717335","doi":"https://doi.org/10.1093/database/baad071","title":"Managing and\u00a0monitoring a pandemic: showcasing a practical approach for\u00a0the genomic surveillance of\u00a0SARS-CoV-2","display_name":"Managing and\u00a0monitoring a pandemic: showcasing a practical approach for\u00a0the genomic surveillance of\u00a0SARS-CoV-2","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4387717335","doi":"https://doi.org/10.1093/database/baad071","pmid":"https://pubmed.ncbi.nlm.nih.gov/37847816"},"language":"en","primary_location":{"id":"doi:10.1093/database/baad071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad071","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad071/52190961/baad071.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad071/52190961/baad071.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058844738","display_name":"Mateusz Jundzill","orcid":"https://orcid.org/0009-0000-7264-9165"},"institutions":[{"id":"https://openalex.org/I2801349226","display_name":"Leibniz Institute of Photonic Technology","ror":"https://ror.org/02se0t636","country_code":"DE","type":"facility","lineage":["https://openalex.org/I2801349226","https://openalex.org/I315704651"]},{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mateusz Jundzill","raw_affiliation_strings":["Institute for Infectious Diseases and Infection Control, Jena University Hospital , Erlanger Allee 103, Jena 07747, Germany","Leibniz Center for Photonics in Infection Research (LPI) , Albert-Einstein-Str. 9, Jena 07747, Germany"],"raw_orcid":"https://orcid.org/0009-0000-7264-9165","affiliations":[{"raw_affiliation_string":"Institute for Infectious Diseases and Infection Control, Jena University Hospital , Erlanger Allee 103, Jena 07747, Germany","institution_ids":["https://openalex.org/I4210134900"]},{"raw_affiliation_string":"Leibniz Center for Photonics in Infection Research (LPI) , Albert-Einstein-Str. 9, Jena 07747, Germany","institution_ids":["https://openalex.org/I2801349226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005518827","display_name":"Riccardo Spott","orcid":"https://orcid.org/0000-0002-2103-167X"},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Riccardo Spott","raw_affiliation_strings":["Institute for Infectious Diseases and Infection Control, Jena University Hospital , Erlanger Allee 103, Jena 07747, Germany"],"raw_orcid":"https://orcid.org/0000-0002-2103-167X","affiliations":[{"raw_affiliation_string":"Institute for Infectious Diseases and Infection Control, Jena University Hospital , Erlanger Allee 103, Jena 07747, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084893467","display_name":"Mara Lohde","orcid":"https://orcid.org/0009-0009-1718-7231"},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mara Lohde","raw_affiliation_strings":["Institute for Infectious Diseases and Infection Control, Jena University Hospital , Erlanger Allee 103, Jena 07747, Germany"],"raw_orcid":"https://orcid.org/0009-0009-1718-7231","affiliations":[{"raw_affiliation_string":"Institute for Infectious Diseases and Infection Control, Jena University Hospital , Erlanger Allee 103, Jena 07747, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032901794","display_name":"Martin H\u00f6lzer","orcid":"https://orcid.org/0000-0001-7090-8717"},"institutions":[{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin H\u00f6lzer","raw_affiliation_strings":["Methodology and Research Infrastructure, Genome Competence Center (MF1), Robert Koch Institute , Seestra\u00dfe 10, Berlin 13353, Germany"],"raw_orcid":"https://orcid.org/0000-0001-7090-8717","affiliations":[{"raw_affiliation_string":"Methodology and Research Infrastructure, Genome Competence Center (MF1), Robert Koch Institute , Seestra\u00dfe 10, Berlin 13353, Germany","institution_ids":["https://openalex.org/I24359323"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025754552","display_name":"Adrian Viehweger","orcid":"https://orcid.org/0000-0002-8970-5204"},"institutions":[{"id":"https://openalex.org/I4210125843","display_name":"University Hospital Leipzig","ror":"https://ror.org/028hv5492","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210125843"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Adrian Viehweger","raw_affiliation_strings":["Institute of Medical Microbiology and Virology, University Hospital Leipzig , Johannisallee 30, Leipzig 04103, Germany"],"raw_orcid":"https://orcid.org/0000-0002-8970-5204","affiliations":[{"raw_affiliation_string":"Institute of Medical Microbiology and Virology, University Hospital Leipzig , Johannisallee 30, Leipzig 04103, Germany","institution_ids":["https://openalex.org/I4210125843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006329781","display_name":"Christian Brandt","orcid":"https://orcid.org/0000-0002-7199-3957"},"institutions":[{"id":"https://openalex.org/I2801349226","display_name":"Leibniz Institute of Photonic Technology","ror":"https://ror.org/02se0t636","country_code":"DE","type":"facility","lineage":["https://openalex.org/I2801349226","https://openalex.org/I315704651"]},{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]},{"id":"https://openalex.org/I4210140556","display_name":"InfectoGnostics Research Campus Jena","ror":"https://ror.org/03wysya92","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210140556"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christian Brandt","raw_affiliation_strings":["InfectoGnostics Research Campus , Philosophenweg 7, Jena 07743, Germany","Institute for Infectious Diseases and Infection Control, Jena University Hospital , Erlanger Allee 103, Jena 07747, Germany","Leibniz Center for Photonics in Infection Research (LPI) , Albert-Einstein-Str. 9, Jena 07747, Germany"],"raw_orcid":"https://orcid.org/0000-0002-7199-3957","affiliations":[{"raw_affiliation_string":"InfectoGnostics Research Campus , Philosophenweg 7, Jena 07743, Germany","institution_ids":["https://openalex.org/I4210140556"]},{"raw_affiliation_string":"Institute for Infectious Diseases and Infection Control, Jena University Hospital , Erlanger Allee 103, Jena 07747, Germany","institution_ids":["https://openalex.org/I4210134900"]},{"raw_affiliation_string":"Leibniz Center for Photonics in Infection Research (LPI) , Albert-Einstein-Str. 9, Jena 07747, Germany","institution_ids":["https://openalex.org/I2801349226"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":2792,"currency":"EUR","value_usd":3011},"fwci":0.8874,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.73163898,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"2023","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11754","display_name":"SARS-CoV-2 detection and testing","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11754","display_name":"SARS-CoV-2 detection and testing","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9753999710083008,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.9742000102996826,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7892037034034729},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6713352799415588},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6574310064315796},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.6028029918670654},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5450688600540161},{"id":"https://openalex.org/keywords/nosql","display_name":"NoSQL","score":0.5300336480140686},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.5130716562271118},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.5116941928863525},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.4600811302661896},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.40684473514556885},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3198259472846985},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.312863290309906},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.24560821056365967},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.0895136296749115}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7892037034034729},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6713352799415588},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6574310064315796},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.6028029918670654},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5450688600540161},{"id":"https://openalex.org/C2779599972","wikidata":"https://www.wikidata.org/wiki/Q82231","display_name":"NoSQL","level":3,"score":0.5300336480140686},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.5130716562271118},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.5116941928863525},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.4600811302661896},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.40684473514556885},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3198259472846985},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.312863290309906},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.24560821056365967},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0895136296749115},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baad071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad071","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad071/52190961/baad071.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:37847816","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37847816","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10581334","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10581334","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10581334/pdf/baad071.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:www.db-thueringen.de:dbt_mods_00059695","is_oa":true,"landing_page_url":"https://www.db-thueringen.de/receive/dbt_mods_00059695","pdf_url":"https://nbn-resolving.org/urn:nbn:de:gbv:27-dbt-20240304-102219-001","source":{"id":"https://openalex.org/S4306400120","display_name":"Common Library Network (Der Gemeinsame Bibliotheksverbund)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210149878","host_organization_name":"Verbundzentrale des GBV","host_organization_lineage":["https://openalex.org/I4210149878"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/database/baad071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad071","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad071/52190961/baad071.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.800000011920929}],"awards":[{"id":"https://openalex.org/G1903593296","display_name":null,"funder_award_id":"FKZ: 13N15745 FKZ:13N15720","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G3895468693","display_name":null,"funder_award_id":"13N15745","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G446763019","display_name":"OpenAccessPublikationskosten / 20232025 / FriedrichSchillerUniversit\u00e4t Jena","funder_award_id":"512648189","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6621051805","display_name":null,"funder_award_id":"13N15720","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4387717335.pdf"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W2026657534","https://openalex.org/W2084568010","https://openalex.org/W2478711386","https://openalex.org/W2510799396","https://openalex.org/W2785869056","https://openalex.org/W2944346404","https://openalex.org/W2999676167","https://openalex.org/W3033301286","https://openalex.org/W3115102118","https://openalex.org/W3164313805","https://openalex.org/W3192499594","https://openalex.org/W3206812144","https://openalex.org/W4307269454","https://openalex.org/W4323670479","https://openalex.org/W6747916119"],"related_works":["https://openalex.org/W2799973158","https://openalex.org/W2419153746","https://openalex.org/W3089119258","https://openalex.org/W2923327995","https://openalex.org/W2518340158","https://openalex.org/W3147331693","https://openalex.org/W349054995","https://openalex.org/W2086537700","https://openalex.org/W2997849137","https://openalex.org/W2081547215"],"abstract_inverted_index":{"With":[0],"the":[1,32,62,80,132],"rapidly":[2],"growing":[3],"amount":[4],"of":[5,18,65,136],"biological":[6,66],"data,":[7],"powerful":[8],"but":[9],"also":[10],"flexible":[11],"data":[12,55,103,181],"management":[13,56,104,122,128],"and":[14,31,42,60,68,92,113,118,124,134,139,165,177],"visualization":[15],"systems":[16,123],"are":[17,35],"increasingly":[19],"crucial":[20],"importance.":[21],"The":[22],"COVID-19":[23],"pandemic":[24],"has":[25],"more":[26],"than":[27],"highlighted":[28],"this":[29],"need":[30],"challenges":[33],"scientists":[34,170],"facing.":[36],"Here,":[37],"we":[38],"provide":[39],"an":[40,52],"example":[41,158],"a":[43,72,142,151,163],"step-by-step":[44],"template":[45,164],"for":[46,83,154],"non-IT":[47],"personnel":[48],"to":[49,58,168,171],"easily":[50,166],"implement":[51],"intuitive,":[53],"interactive":[54],"solution":[57,153],"manage":[59],"visualize":[61],"high":[63],"influx":[64],"samples":[67,96],"associated":[69],"metadata":[70],"in":[71,85,107],"laboratory":[73,120],"setting.":[74],"Our":[75,157],"approach":[76],"is":[77],"illustrated":[78],"with":[79],"genomic":[81],"surveillance":[82],"SARS-CoV-2":[84],"Germany,":[86],"covering":[87],"over":[88],"11":[89],"600":[90],"internal":[91],"130":[93],"000":[94],"external":[95],"from":[97],"multiple":[98],"datasets.":[99],"We":[100,130],"compare":[101],"three":[102],"options":[105],"used":[106],"laboratories:":[108],"(i)":[109],"simple,":[110],"yet":[111],"error-prone":[112],"inefficient":[114],"spreadsheets,":[115],"(ii)":[116],"complex":[117,180],"long-to-implement":[119],"information":[121],"(iii)":[125],"high-performance":[126],"database":[127],"systems.":[129],"highlight":[131],"advantages":[133],"pitfalls":[135],"each":[137],"option":[138,145],"outline":[140],"why":[141],"document-oriented":[143],"NoSQL":[144],"via":[146],"MongoDB":[147],"Atlas":[148],"can":[149,159],"be":[150,160],"suitable":[152],"many":[155],"labs.":[156],"treated":[161],"as":[162],"adapted":[167],"allow":[169],"focus":[172],"on":[173,179],"their":[174],"core":[175],"work":[176],"not":[178],"administration.":[182]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
