{"id":"https://openalex.org/W4383334758","doi":"https://doi.org/10.1093/database/baad051","title":"CropGF: a comprehensive visual platform for\u00a0crop gene family mining and\u00a0analysis","display_name":"CropGF: a comprehensive visual platform for\u00a0crop gene family mining and\u00a0analysis","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4383334758","doi":"https://doi.org/10.1093/database/baad051","pmid":"https://pubmed.ncbi.nlm.nih.gov/37410917"},"language":"en","primary_location":{"id":"doi:10.1093/database/baad051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad051","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad051/50834940/baad051.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad051/50834940/baad051.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101221063","display_name":"Jingtian Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingtian Xu","raw_affiliation_strings":["Department of Bioinformatics, College of Life Sciences , Zhejiang University, Hangzhou 310058, China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, College of Life Sciences , Zhejiang University, Hangzhou 310058, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102765190","display_name":"Can Zhu","orcid":"https://orcid.org/0009-0008-2623-6974"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Can Zhu","raw_affiliation_strings":["Department of Bioinformatics, College of Life Sciences , Zhejiang University, Hangzhou 310058, China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, College of Life Sciences , Zhejiang University, Hangzhou 310058, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108848832","display_name":"Minzeng Su","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Minzeng Su","raw_affiliation_strings":["Department of Bioinformatics, College of Life Sciences , Zhejiang University, Hangzhou 310058, China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, College of Life Sciences , Zhejiang University, Hangzhou 310058, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084886635","display_name":"Sida Li","orcid":"https://orcid.org/0000-0002-3639-4772"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sida Li","raw_affiliation_strings":["Department of Bioinformatics, College of Life Sciences , Zhejiang University, Hangzhou 310058, China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, College of Life Sciences , Zhejiang University, Hangzhou 310058, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011990443","display_name":"Haoyu Chao","orcid":"https://orcid.org/0000-0002-5475-0443"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Haoyu Chao","raw_affiliation_strings":["Department of Bioinformatics, College of Life Sciences , Zhejiang University, Hangzhou 310058, China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, College of Life Sciences , Zhejiang University, Hangzhou 310058, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100423292","display_name":"Ming Chen","orcid":"https://orcid.org/0000-0002-9677-1699"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ming Chen","raw_affiliation_strings":["Department of Bioinformatics, College of Life Sciences , Zhejiang University, Hangzhou 310058, China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, College of Life Sciences , Zhejiang University, Hangzhou 310058, China","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5011990443","https://openalex.org/A5100423292"],"corresponding_institution_ids":["https://openalex.org/I76130692"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.827,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.7419154,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2023","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12403","display_name":"Seed and Plant Biochemistry","score":0.9294999837875366,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12403","display_name":"Seed and Plant Biochemistry","score":0.9294999837875366,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crop","display_name":"Crop","score":0.5561625361442566},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4808371961116791},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32527250051498413},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2599010467529297},{"id":"https://openalex.org/keywords/agronomy","display_name":"Agronomy","score":0.13187956809997559}],"concepts":[{"id":"https://openalex.org/C137580998","wikidata":"https://www.wikidata.org/wiki/Q235352","display_name":"Crop","level":2,"score":0.5561625361442566},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4808371961116791},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32527250051498413},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2599010467529297},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.13187956809997559}],"mesh":[{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032983","descriptor_name":"Setaria Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D032983","descriptor_name":"Setaria Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D032983","descriptor_name":"Setaria Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D032983","descriptor_name":"Setaria Plant","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D032983","descriptor_name":"Setaria Plant","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D032983","descriptor_name":"Setaria Plant","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baad051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad051","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad051/50834940/baad051.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:37410917","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37410917","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10325484","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10325484","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10325484/pdf/baad051.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baad051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad051","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad051/50834940/baad051.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3866367663","display_name":null,"funder_award_id":"32070677 32261133526 32270709","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322927","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884"},{"id":"https://openalex.org/F4320329854","display_name":"Jiangsu Collaborative Innovation Center for Modern Crop Production","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4383334758.pdf"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1982372752","https://openalex.org/W2020134788","https://openalex.org/W2031611770","https://openalex.org/W2045949302","https://openalex.org/W2070360519","https://openalex.org/W2096400978","https://openalex.org/W2105869636","https://openalex.org/W2128296317","https://openalex.org/W2157009395","https://openalex.org/W2158804744","https://openalex.org/W2298960478","https://openalex.org/W2339745204","https://openalex.org/W2612791998","https://openalex.org/W2765380711","https://openalex.org/W2983263940","https://openalex.org/W3143063265","https://openalex.org/W4205968699","https://openalex.org/W4206516340","https://openalex.org/W4214511655","https://openalex.org/W4223552703","https://openalex.org/W4296794789","https://openalex.org/W4306839728","https://openalex.org/W6769689940"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"A":[0],"gene":[1,52,102,131,150,204,207,239],"family":[2,53,103,151,208],"refers":[3],"to":[4,42],"a":[5,11,29,48,71,108,121,137,226],"group":[6],"of":[7,36,51,110,117,130,237],"genes":[8,113,175],"that":[9,75,125,222],"share":[10],"common":[12],"ancestry":[13],"and":[14,38,85,88,98,105,114,133,176,195,210,217,232],"encode":[15],"proteins":[16],"or":[17,23,140,157],"RNA":[18],"molecules":[19],"with":[20],"similar":[21],"functions":[22],"structural":[24],"features.":[25],"Gene":[26],"families":[27,132],"play":[28],"crucial":[30],"role":[31],"in":[32,136,234],"determining":[33],"the":[34,128,165],"traits":[35],"plants":[37],"can":[39,144],"be":[40,225],"utilized":[41],"develop":[43],"new":[44],"crop":[45,139,238],"varieties.":[46],"Therefore,":[47],"comprehensive":[49,72],"database":[50],"is":[54],"significant":[55],"for":[56,101,127,173,229],"gaining":[57],"deep":[58,230],"insight":[59],"into":[60,203],"crops.":[61,142],"To":[62,159],"address":[63],"this":[64],"need,":[65],"we":[66,162],"have":[67,163],"developed":[68],"CropGF":[69,119,179,223],"(https://bis.zju.edu.cn/cropgf),":[70],"visual":[73],"platform":[74],"encompasses":[76],"six":[77],"important":[78],"crops":[79],"(rice,":[80],"wheat,":[81],"maize,":[82],"barley,":[83],"sorghum":[84],"foxtail":[86],"millet)":[87],"one":[89],"model":[90],"plant":[91],"(Arabidopsis),":[92],"as":[93,95,186],"well":[94],"genomics,":[96],"transcriptomics":[97],"proteomics":[99],"data":[100],"mining":[104,231],"analysis,":[106,188],"covering":[107],"total":[109],"314":[111],"611":[112],"4399":[115],"types":[116],"domains.":[118,177],"provides":[120],"versatile":[122],"search":[123,147],"system":[124],"allows":[126],"identification":[129],"their":[134,146],"members":[135],"single":[138],"multiple":[141],"Users":[143],"customize":[145],"based":[148],"on":[149],"domains":[152],"and/or":[153],"homology":[154],"using":[155],"keywords":[156],"BLAST.":[158],"enhance":[160],"usability,":[161],"collected":[164],"corresponding":[166],"ID":[167],"information":[168],"from":[169],"various":[170],"public":[171],"databases":[172],"both":[174],"Furthermore,":[178],"comprises":[180],"numerous":[181],"downstream":[182],"analysis":[183,194,233],"modules,":[184],"such":[185],"ka/ks":[187],"phylogenetic":[189],"tree":[190],"construction,":[191],"subcellular":[192],"localization":[193],"more.":[196],"These":[197],"visually-displayed":[198],"modules":[199],"provide":[200],"intuitive":[201],"insights":[202],"expression":[205],"patterns,":[206],"expansion":[209],"functional":[211],"relationships":[212],"across":[213],"different":[214,218],"molecular":[215],"levels":[216],"species.":[219],"We":[220],"believe":[221],"will":[224],"valuable":[227],"resource":[228],"future":[235],"studies":[236],"families.":[240],"Database":[241],"URL":[242],"https://bis.zju.edu.cn/cropgf.":[243]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}