{"id":"https://openalex.org/W4380538126","doi":"https://doi.org/10.1093/database/baad041","title":"Neodb: a comprehensive neoantigen database and\u00a0discovery platform for\u00a0cancer immunotherapy","display_name":"Neodb: a comprehensive neoantigen database and\u00a0discovery platform for\u00a0cancer immunotherapy","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4380538126","doi":"https://doi.org/10.1093/database/baad041","pmid":"https://pubmed.ncbi.nlm.nih.gov/37311149"},"language":"en","primary_location":{"id":"doi:10.1093/database/baad041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad041","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad041/50597934/baad041.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad041/50597934/baad041.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044084188","display_name":"Tao Wu","orcid":"https://orcid.org/0000-0002-8999-9628"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]},{"id":"https://openalex.org/I4210121447","display_name":"Center for Excellence in Molecular Cell Science","ror":"https://ror.org/02rrdvm96","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210121447"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Wu","raw_affiliation_strings":["School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China","Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences , 320 Yue Yang Road, Shanghai 200031, China","University of Chinese Academy of Sciences , 1 Yanqihu East Rd, Huairou District, Beijing 101408, China"],"raw_orcid":"https://orcid.org/0000-0002-8999-9628","affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China","institution_ids":["https://openalex.org/I30809798"]},{"raw_affiliation_string":"Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences , 320 Yue Yang Road, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210121447","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , 1 Yanqihu East Rd, Huairou District, Beijing 101408, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100394852","display_name":"Jing Chen","orcid":"https://orcid.org/0000-0002-0024-4561"},"institutions":[{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Chen","raw_affiliation_strings":["School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China","institution_ids":["https://openalex.org/I30809798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021215187","display_name":"Kaixuan Diao","orcid":"https://orcid.org/0000-0003-0535-7474"},"institutions":[{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kaixuan Diao","raw_affiliation_strings":["School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China","institution_ids":["https://openalex.org/I30809798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092160142","display_name":"Guangshuai Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangshuai Wang","raw_affiliation_strings":["School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China","institution_ids":["https://openalex.org/I30809798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100614574","display_name":"Jinyu Wang","orcid":"https://orcid.org/0000-0002-8252-307X"},"institutions":[{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinyu Wang","raw_affiliation_strings":["School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China","institution_ids":["https://openalex.org/I30809798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051329507","display_name":"Huizi Yao","orcid":"https://orcid.org/0000-0002-7452-3168"},"institutions":[{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huizi Yao","raw_affiliation_strings":["School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China","institution_ids":["https://openalex.org/I30809798"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100671624","display_name":"Xuesong Liu","orcid":"https://orcid.org/0000-0002-7736-0077"},"institutions":[{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]},{"id":"https://openalex.org/I4210157781","display_name":"Shanghai Clinical Research Center","ror":"https://ror.org/057tkkm33","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210157781"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xue-Song Liu","raw_affiliation_strings":["School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China","Shanghai Clinical Research and Trial Center , 1599 Keyuan Road, Pudong New Area, Shanghai 201203, China"],"raw_orcid":"https://orcid.org/0000-0002-7736-0077","affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, ShanghaiTech University , 393 Middle Huaxia Road, Pudong, Shanghai 201203, China","institution_ids":["https://openalex.org/I30809798"]},{"raw_affiliation_string":"Shanghai Clinical Research and Trial Center , 1599 Keyuan Road, Pudong New Area, Shanghai 201203, China","institution_ids":["https://openalex.org/I4210157781"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":3.0945,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.91860101,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"2023","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/immunogenicity","display_name":"Immunogenicity","score":0.9225656390190125},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5662862658500671},{"id":"https://openalex.org/keywords/immunotherapy","display_name":"Immunotherapy","score":0.4622720181941986},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4553627371788025},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.4062904417514801},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3496643900871277},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27074453234672546},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.2303425669670105},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.2093207836151123}],"concepts":[{"id":"https://openalex.org/C2780868878","wikidata":"https://www.wikidata.org/wiki/Q1660197","display_name":"Immunogenicity","level":3,"score":0.9225656390190125},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5662862658500671},{"id":"https://openalex.org/C2777701055","wikidata":"https://www.wikidata.org/wiki/Q1427096","display_name":"Immunotherapy","level":3,"score":0.4622720181941986},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4553627371788025},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.4062904417514801},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3496643900871277},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27074453234672546},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.2303425669670105},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.2093207836151123}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007167","descriptor_name":"Immunotherapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007167","descriptor_name":"Immunotherapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007167","descriptor_name":"Immunotherapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baad041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad041","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad041/50597934/baad041.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:37311149","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37311149","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10263465","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10263465","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10263465/pdf/baad041.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baad041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad041","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad041/50597934/baad041.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5400000214576721}],"awards":[{"id":"https://openalex.org/G1465850690","display_name":null,"funder_award_id":"21ZR1442400","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G8081378368","display_name":null,"funder_award_id":"31771373","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"},{"id":"https://openalex.org/F4320327675","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4380538126.pdf"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1984068087","https://openalex.org/W2011458181","https://openalex.org/W2117333383","https://openalex.org/W2142269152","https://openalex.org/W2766564423","https://openalex.org/W2808625215","https://openalex.org/W2885999655","https://openalex.org/W2995494055","https://openalex.org/W3009889677","https://openalex.org/W3024570138","https://openalex.org/W3098804002","https://openalex.org/W3134443156","https://openalex.org/W3154423121","https://openalex.org/W3159295432","https://openalex.org/W3161045232","https://openalex.org/W3161684482","https://openalex.org/W3188579603","https://openalex.org/W4224132465","https://openalex.org/W4281392198","https://openalex.org/W4303699434","https://openalex.org/W4313492115","https://openalex.org/W6799923563"],"related_works":["https://openalex.org/W1552738310","https://openalex.org/W4250292386","https://openalex.org/W2470318958","https://openalex.org/W2428121789","https://openalex.org/W1548104248","https://openalex.org/W2030908446","https://openalex.org/W3042894437","https://openalex.org/W2403806215","https://openalex.org/W1585253481","https://openalex.org/W1606819293"],"abstract_inverted_index":{"Neoantigens":[0],"derived":[1,181],"from":[2,97,182],"somatic":[3],"deoxyribonucleic":[4],"acid":[5],"alterations":[6],"are":[7,29],"ideal":[8],"cancer-specific":[9],"targets.":[10],"However,":[11],"integrated":[12,45],"platform":[13],"for":[14,127,162],"neoantigen":[15,53,128,136,164,172,215,227],"discovery":[16,54,139],"is":[17,39],"urgently":[18],"needed.":[19],"Recently,":[20],"many":[21],"scattered":[22],"experimental":[23,65],"evidences":[24,66],"suggest":[25],"that":[26],"some":[27],"neoantigens":[28,38,85,96,180],"immunogenic,":[30],"and":[31,77,124,138,166,185,205,229],"comprehensive":[32,59,74,90],"collection":[33,82],"of":[34,70,83,147,178,211,220,226,233],"these":[35],"experimentally":[36,148],"validated":[37,149,154],"still":[40],"lacking.":[41],"Here,":[42],"we":[43,72,102],"have":[44],"the":[46,51,68,79,94,117,144,208,224,230],"commonly":[47],"used":[48],"tools":[49],"in":[50,214],"current":[52],"process":[55],"to":[56,92,115,153],"form":[57],"a":[58,104,195],"web-based":[60,135],"analysis":[61],"platform.":[62],"To":[63],"identify":[64],"supporting":[67],"immunogenicity":[69,129,190,216,228],"neoantigens,":[71],"performed":[73],"literature":[75],"search":[76],"constructed":[78,103],"database.":[80],"The":[81,131,218],"public":[84,179],"was":[86],"obtained":[87],"by":[88],"using":[89,111],"features":[91],"filter":[93],"potential":[95],"recurrent":[98,183],"driver":[99],"mutations.":[100],"Importantly,":[101],"graph":[105],"neural":[106],"network":[107],"(GNN)":[108],"model":[109,213],"(Immuno-GNN)":[110],"an":[112],"attention":[113],"mechanism":[114],"consider":[116],"spatial":[118],"interactions":[119],"between":[120],"human":[121],"leukocyte":[122],"antigen":[123],"antigenic":[125],"peptides":[126],"prediction.":[130,217],"new":[132],"easy-to-use":[133],"R/Shiny":[134],"database":[137],"platform,":[140],"Neodb,":[141],"contains":[142],"currently":[143],"largest":[145],"number":[146],"neoantigens.":[150],"In":[151],"addition":[152],"neoantigen,":[155],"Neodb":[156,221],"also":[157,206],"includes":[158],"three":[159],"additional":[160],"modules":[161],"facilitating":[163],"prediction":[165,173,191],"analysis,":[167],"including":[168],"'Tools'":[169],"module":[170,176,187],"(comprehensive":[171],"tools);":[174],"'Driver-Neo'":[175],"(collection":[177],"mutations)":[184],"'Immuno-GNN'":[186],"(a":[188],"novel":[189],"tool":[192],"based":[193],"on":[194],"GNN).":[196],"Immuno-GNN":[197],"shows":[198],"improved":[199],"performance":[200],"compared":[201],"with":[202],"known":[203],"methods":[204],"represents":[207],"first":[209],"application":[210,232],"GNN":[212],"construction":[219],"will":[222],"facilitate":[223],"study":[225],"clinical":[231],"neoantigen-based":[234],"cancer":[235],"immunotherapy.":[236],"Database":[237],"URL":[238],"https://liuxslab.com/Neodb/.":[239]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
