{"id":"https://openalex.org/W4361974320","doi":"https://doi.org/10.1093/database/baad011","title":"Improved insights into the SABIO-RK database via visualization","display_name":"Improved insights into the SABIO-RK database via visualization","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4361974320","doi":"https://doi.org/10.1093/database/baad011","pmid":"https://pubmed.ncbi.nlm.nih.gov/37002681"},"language":"en","primary_location":{"id":"doi:10.1093/database/baad011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad011","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad011/49720385/baad011.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad011/49720385/baad011.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086571148","display_name":"Dorotea Duda\u0161","orcid":"https://orcid.org/0000-0001-5034-730X"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Dorotea Duda\u0161","raw_affiliation_strings":["Scientific Databases and Visualization, Heidelberg Institute for Theoretical Studies (HITS gGmbH) , Schloss-Wolfsbrunnenweg 35, Heidelberg 69118, Germany"],"affiliations":[{"raw_affiliation_string":"Scientific Databases and Visualization, Heidelberg Institute for Theoretical Studies (HITS gGmbH) , Schloss-Wolfsbrunnenweg 35, Heidelberg 69118, Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009119354","display_name":"Ulrike Wittig","orcid":"https://orcid.org/0000-0002-9077-5664"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ulrike Wittig","raw_affiliation_strings":["Scientific Databases and Visualization, Heidelberg Institute for Theoretical Studies (HITS gGmbH) , Schloss-Wolfsbrunnenweg 35, Heidelberg 69118, Germany"],"affiliations":[{"raw_affiliation_string":"Scientific Databases and Visualization, Heidelberg Institute for Theoretical Studies (HITS gGmbH) , Schloss-Wolfsbrunnenweg 35, Heidelberg 69118, Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071264560","display_name":"Maja Rey","orcid":null},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maja Rey","raw_affiliation_strings":["Scientific Databases and Visualization, Heidelberg Institute for Theoretical Studies (HITS gGmbH) , Schloss-Wolfsbrunnenweg 35, Heidelberg 69118, Germany"],"affiliations":[{"raw_affiliation_string":"Scientific Databases and Visualization, Heidelberg Institute for Theoretical Studies (HITS gGmbH) , Schloss-Wolfsbrunnenweg 35, Heidelberg 69118, Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004349037","display_name":"Andreas Weidemann","orcid":null},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Weidemann","raw_affiliation_strings":["Scientific Databases and Visualization, Heidelberg Institute for Theoretical Studies (HITS gGmbH) , Schloss-Wolfsbrunnenweg 35, Heidelberg 69118, Germany"],"affiliations":[{"raw_affiliation_string":"Scientific Databases and Visualization, Heidelberg Institute for Theoretical Studies (HITS gGmbH) , Schloss-Wolfsbrunnenweg 35, Heidelberg 69118, Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060937863","display_name":"Wolfgang G. M\u00fcller","orcid":"https://orcid.org/0000-0002-4980-3512"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wolfgang M\u00fcller","raw_affiliation_strings":["Scientific Databases and Visualization, Heidelberg Institute for Theoretical Studies (HITS gGmbH) , Schloss-Wolfsbrunnenweg 35, Heidelberg 69118, Germany"],"affiliations":[{"raw_affiliation_string":"Scientific Databases and Visualization, Heidelberg Institute for Theoretical Studies (HITS gGmbH) , Schloss-Wolfsbrunnenweg 35, Heidelberg 69118, Germany","institution_ids":["https://openalex.org/I71030271"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5086571148"],"corresponding_institution_ids":["https://openalex.org/I71030271"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.3079,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.62313724,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"2023","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9771000146865845,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9771000146865845,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9490000009536743,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10301","display_name":"Mitochondrial Function and Pathology","score":0.9120000004768372,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6769603490829468},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6258589029312134},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.49786901473999023},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45897191762924194},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4096928536891937},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33649328351020813},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.29289817810058594}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6769603490829468},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6258589029312134},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.49786901473999023},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45897191762924194},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4096928536891937},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33649328351020813},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.29289817810058594}],"mesh":[{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baad011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad011","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad011/49720385/baad011.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:37002681","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37002681","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10066030","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10066030","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10066030/pdf/baad011.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baad011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad011","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad011/49720385/baad011.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1591470461","display_name":null,"funder_award_id":"031L0178","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320324316","display_name":"Klaus Tschira Stiftung","ror":"https://ror.org/052jep661"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4361974320.pdf","grobid_xml":"https://content.openalex.org/works/W4361974320.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W2084872020","https://openalex.org/W2190720864","https://openalex.org/W2336220052","https://openalex.org/W2606882994","https://openalex.org/W2766958291","https://openalex.org/W2888636847","https://openalex.org/W3105895642","https://openalex.org/W3112376646","https://openalex.org/W3175134991","https://openalex.org/W6759613433"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2081517010","https://openalex.org/W2121496884","https://openalex.org/W2387910809"],"abstract_inverted_index":{"SABIO-RK":[0,12,113],"is":[1,76],"a":[2,77,102,108,123],"database":[3],"for":[4],"biochemical":[5,114,142],"reactions":[6,143],"and":[7,16,49,54,79,90,94,128,144],"their":[8],"kinetics.":[9],"Data":[10],"in":[11],"are":[13,24],"inherently":[14],"multidimensional":[15],"complex.":[17],"The":[18],"complex":[19,64],"relationships":[20],"between":[21,47],"the":[22,45,59,88,99,112,133],"data":[23,43,60,65,89],"often":[25],"difficult":[26],"to":[27,82,91,131],"follow":[28],"or":[29],"even":[30],"not":[31],"represented":[32],"when":[33],"using":[34,70],"standard":[35],"tabular":[36],"views.":[37],"With":[38],"an":[39,56,85],"increasing":[40],"number":[41],"of":[42,58,87,101,104,137,141],"points":[44],"mismatch":[46],"tables":[48],"insights":[50],"becomes":[51,61],"more":[52],"obvious,":[53],"getting":[55],"overview":[57,86],"harder.":[62],"Such":[63],"benefit":[66],"from":[67],"being":[68],"presented":[69],"specially":[71],"adapted":[72],"visual":[73,135],"tools.":[74],"Visualization":[75],"natural":[78],"user-friendly":[80],"way":[81],"quickly":[83],"get":[84],"detect":[92],"clusters":[93],"outliers.":[95],"Here,":[96],"we":[97,121],"describe":[98],"implementation":[100],"variety":[103],"visualization":[105],"concepts":[106],"into":[107],"common":[109],"interface":[110],"within":[111],"reaction":[115],"kinetics":[116],"database.":[117],"For":[118],"that":[119],"purpose,":[120],"use":[122],"heat":[124],"map,":[125],"parallel":[126],"coordinates":[127],"scatter":[129],"plots":[130],"allow":[132],"interactive":[134],"exploration":[136],"general":[138],"entry-based":[139],"information":[140],"specific":[145],"kinetic":[146],"parameter":[147],"values.":[148],"Database":[149],"URL":[150],"https://sabiork.h-its.org/.":[151]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
