{"id":"https://openalex.org/W4322718898","doi":"https://doi.org/10.1093/database/baad007","title":"Assessing resource use: a case study with the Human Disease Ontology","display_name":"Assessing resource use: a case study with the Human Disease Ontology","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4322718898","doi":"https://doi.org/10.1093/database/baad007","pmid":"https://pubmed.ncbi.nlm.nih.gov/36856688"},"language":"en","primary_location":{"id":"doi:10.1093/database/baad007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad007","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad007/49351964/baad007.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad007/49351964/baad007.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062074020","display_name":"J. Allen Baron","orcid":"https://orcid.org/0000-0002-0593-3569"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J. Allen Baron","raw_affiliation_strings":["University of Maryland School of Medicine, Institute for Genome Sciences , 670 W. Baltimore St., HSFIII, Baltimore, MD 21201, USA"],"affiliations":[{"raw_affiliation_string":"University of Maryland School of Medicine, Institute for Genome Sciences , 670 W. Baltimore St., HSFIII, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089183537","display_name":"Lynn M. Schriml","orcid":"https://orcid.org/0000-0001-8910-9851"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lynn M Schriml","raw_affiliation_strings":["University of Maryland School of Medicine, Institute for Genome Sciences , 670 W. Baltimore St., HSFIII, Baltimore, MD 21201, USA"],"affiliations":[{"raw_affiliation_string":"University of Maryland School of Medicine, Institute for Genome Sciences , 670 W. Baltimore St., HSFIII, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5062074020","https://openalex.org/A5089183537"],"corresponding_institution_ids":["https://openalex.org/I126744593"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.4727,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.66093336,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2023","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8675553798675537},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7902239561080933},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6936736106872559},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5606454610824585},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5244717597961426},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5134690403938293},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4596329629421234},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44323796033859253},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.44058656692504883},{"id":"https://openalex.org/keywords/web-resource","display_name":"Web resource","score":0.41727542877197266},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.41362032294273376}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8675553798675537},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7902239561080933},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6936736106872559},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5606454610824585},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5244717597961426},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5134690403938293},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4596329629421234},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44323796033859253},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.44058656692504883},{"id":"https://openalex.org/C65603577","wikidata":"https://www.wikidata.org/wiki/Q3427877","display_name":"Web resource","level":2,"score":0.41727542877197266},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.41362032294273376},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baad007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad007","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad007/49351964/baad007.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:36856688","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36856688","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9972798","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9972798","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9972798/pdf/baad007.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/22654021","is_oa":true,"landing_page_url":"https://figshare.com/articles/poster/Assessing_resource_use_a_case_study_with_the_Human_Disease_Ontology/22654021","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Image"},{"id":"doi:10.6084/m9.figshare.22654021.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.22654021.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"graphic"}],"best_oa_location":{"id":"doi:10.1093/database/baad007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad007","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad007/49351964/baad007.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.4300000071525574}],"awards":[{"id":"https://openalex.org/G3383009252","display_name":null,"funder_award_id":"U41 HG008735-01A1","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4322718898.pdf"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1890493318","https://openalex.org/W2399850256","https://openalex.org/W2784045614","https://openalex.org/W2965518110","https://openalex.org/W2979661385","https://openalex.org/W3015453090","https://openalex.org/W3102334381","https://openalex.org/W3214608846","https://openalex.org/W4251447235","https://openalex.org/W4308834638","https://openalex.org/W6775750170"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W188202134","https://openalex.org/W2403120993","https://openalex.org/W2312359119","https://openalex.org/W2371807696"],"abstract_inverted_index":{"As":[0],"a":[1,8,42,84,107,133],"genomic":[2],"resource":[3,13,145],"provider,":[4],"grappling":[5],"with":[6,83,97],"getting":[7],"handle":[9],"on":[10,46],"how":[11],"your":[12],"is":[14,34],"utilized":[15,58],"can":[16],"be":[17,156],"extremely":[18],"challenging.":[19],"At":[20],"the":[21,29,51,68,71,111,118,137,150],"same":[22],"time,":[23],"being":[24],"able":[25],"to":[26,36,59,61,64,90,155,158,171],"thus":[27],"document":[28],"plethora":[30],"of":[31,67,87,101,113,136],"use":[32,117,139,146],"cases":[33],"vital":[35],"demonstrate":[37],"sustainability.":[38],"Herein,":[39],"we":[40],"describe":[41],"flexible":[43],"workflow,":[44],"built":[45],"readily":[47],"available":[48],"software,":[49],"that":[50,116,126],"Human":[52],"Disease":[53],"Ontology":[54],"(DO)":[55],"project":[56],"has":[57,80,104,121],"transition":[60],"semi-automated":[62],"methods":[63],"identify":[65],"uses":[66],"ontology":[69],"in":[70,95,106,110],"published":[72],"literature.":[73],"The":[74,143],"novel":[75,123],"R":[76],"package":[77],"DO.utils":[78],"(https://github.com/DiseaseOntology/DO.utils)":[79],"been":[81],"devised":[82],"small":[85],"set":[86],"key":[88],"functions":[89],"support":[91],"our":[92],"usage":[93,124],"workflow":[94,103,148],"combination":[96],"Google":[98],"Sheets.":[99],"Use":[100],"this":[102],"resulted":[105],"3-fold":[108],"increase":[109],"number":[112],"identified":[114],"publications":[115],"DO":[119],"and":[120,131,140,149,167],"provided":[122],"insights":[125],"offer":[127],"new":[128],"research":[129],"directions":[130],"reveal":[132],"clearer":[134],"picture":[135],"DO's":[138,144],"scientific":[141],"impact.":[142],"assessment":[147],"supporting":[151],"software":[152,163],"are":[153],"designed":[154],"useful":[157],"other":[159,168],"resources,":[160,170],"including":[161],"databases,":[162],"tools,":[164],"method":[165],"providers":[166],"web":[169],"achieve":[172],"similar":[173],"results.":[174],"Database":[175],"URL:":[176],"https://github.com/DiseaseOntology/DO.utils.":[177]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-12T08:34:05.389933","created_date":"2025-10-10T00:00:00"}
