{"id":"https://openalex.org/W4311587210","doi":"https://doi.org/10.1093/database/baac104","title":"Emati: a recommender system for biomedical literature based on supervised learning","display_name":"Emati: a recommender system for biomedical literature based on supervised learning","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4311587210","doi":"https://doi.org/10.1093/database/baac104","pmid":"https://pubmed.ncbi.nlm.nih.gov/36484479"},"language":"en","primary_location":{"id":"doi:10.1093/database/baac104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac104","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac104/47779573/baac104.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac104/47779573/baac104.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080140672","display_name":"\u00d6zge Kart","orcid":"https://orcid.org/0000-0001-6954-4928"},"institutions":[{"id":"https://openalex.org/I193615760","display_name":"Dokuz Eyl\u00fcl University","ror":"https://ror.org/00dbd8b73","country_code":"TR","type":"education","lineage":["https://openalex.org/I193615760"]},{"id":"https://openalex.org/I4405272450","display_name":"Biotechnologisches Zentrum","ror":"https://ror.org/046b28292","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4405272450","https://openalex.org/I78650965"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE","TR"],"is_corresponding":false,"raw_author_name":"\u00d6zge Kart","raw_affiliation_strings":["Biotechnology Center (BIOTEC), Center for Molecular and Cellular Bioengineering (CMCB), Technische Universit\u00e4t Dresden , Tatzberg 47-49, Dresden 01307, Germany","Department of Computer Engineering, Dokuz Eyl\u00fcl University , Tinaztepe Campus, Buca 35160 Izmir, Turkey"],"raw_orcid":"https://orcid.org/0000-0001-6954-4928","affiliations":[{"raw_affiliation_string":"Biotechnology Center (BIOTEC), Center for Molecular and Cellular Bioengineering (CMCB), Technische Universit\u00e4t Dresden , Tatzberg 47-49, Dresden 01307, Germany","institution_ids":["https://openalex.org/I4405272450","https://openalex.org/I78650965"]},{"raw_affiliation_string":"Department of Computer Engineering, Dokuz Eyl\u00fcl University , Tinaztepe Campus, Buca 35160 Izmir, Turkey","institution_ids":["https://openalex.org/I193615760"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070301995","display_name":"Alexandre Mestiashvili","orcid":null},"institutions":[{"id":"https://openalex.org/I4405272450","display_name":"Biotechnologisches Zentrum","ror":"https://ror.org/046b28292","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4405272450","https://openalex.org/I78650965"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexandre Mestiashvili","raw_affiliation_strings":["Biotechnology Center (BIOTEC), Center for Molecular and Cellular Bioengineering (CMCB), Technische Universit\u00e4t Dresden , Tatzberg 47-49, Dresden 01307, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center (BIOTEC), Center for Molecular and Cellular Bioengineering (CMCB), Technische Universit\u00e4t Dresden , Tatzberg 47-49, Dresden 01307, Germany","institution_ids":["https://openalex.org/I4405272450","https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004184527","display_name":"Kurt Lachmann","orcid":null},"institutions":[{"id":"https://openalex.org/I4405272450","display_name":"Biotechnologisches Zentrum","ror":"https://ror.org/046b28292","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4405272450","https://openalex.org/I78650965"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kurt Lachmann","raw_affiliation_strings":["Biotechnology Center (BIOTEC), Center for Molecular and Cellular Bioengineering (CMCB), Technische Universit\u00e4t Dresden , Tatzberg 47-49, Dresden 01307, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center (BIOTEC), Center for Molecular and Cellular Bioengineering (CMCB), Technische Universit\u00e4t Dresden , Tatzberg 47-49, Dresden 01307, Germany","institution_ids":["https://openalex.org/I4405272450","https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039393096","display_name":"Richard M. Kwasnicki","orcid":"https://orcid.org/0000-0002-0184-8391"},"institutions":[{"id":"https://openalex.org/I4405272450","display_name":"Biotechnologisches Zentrum","ror":"https://ror.org/046b28292","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4405272450","https://openalex.org/I78650965"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Richard Kwasnicki","raw_affiliation_strings":["Biotechnology Center (BIOTEC), Center for Molecular and Cellular Bioengineering (CMCB), Technische Universit\u00e4t Dresden , Tatzberg 47-49, Dresden 01307, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center (BIOTEC), Center for Molecular and Cellular Bioengineering (CMCB), Technische Universit\u00e4t Dresden , Tatzberg 47-49, Dresden 01307, Germany","institution_ids":["https://openalex.org/I4405272450","https://openalex.org/I78650965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016411406","display_name":"Michael Schroeder","orcid":"https://orcid.org/0000-0003-2848-6949"},"institutions":[{"id":"https://openalex.org/I4405272450","display_name":"Biotechnologisches Zentrum","ror":"https://ror.org/046b28292","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4405272450","https://openalex.org/I78650965"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Michael Schroeder","raw_affiliation_strings":["Biotechnology Center (BIOTEC), Center for Molecular and Cellular Bioengineering (CMCB), Technische Universit\u00e4t Dresden , Tatzberg 47-49, Dresden 01307, Germany"],"raw_orcid":"https://orcid.org/0000-0003-2848-6949","affiliations":[{"raw_affiliation_string":"Biotechnology Center (BIOTEC), Center for Molecular and Cellular Bioengineering (CMCB), Technische Universit\u00e4t Dresden , Tatzberg 47-49, Dresden 01307, Germany","institution_ids":["https://openalex.org/I4405272450","https://openalex.org/I78650965"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5016411406"],"corresponding_institution_ids":["https://openalex.org/I4405272450","https://openalex.org/I78650965"],"apc_list":{"value":2475,"currency":"USD","value_usd":2475},"apc_paid":{"value":2089,"currency":"EUR","value_usd":2252},"fwci":0.6405,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.75007187,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":97},"biblio":{"volume":"2022","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11550","display_name":"Text and Document Classification Technologies","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/recommender-system","display_name":"Recommender system","score":0.7794486284255981},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7462997436523438},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5422145128250122},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5349235534667969},{"id":"https://openalex.org/keywords/supervised-learning","display_name":"Supervised learning","score":0.45895180106163025},{"id":"https://openalex.org/keywords/multimedia","display_name":"Multimedia","score":0.34169983863830566},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3335534930229187},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32625237107276917}],"concepts":[{"id":"https://openalex.org/C557471498","wikidata":"https://www.wikidata.org/wiki/Q554950","display_name":"Recommender system","level":2,"score":0.7794486284255981},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7462997436523438},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5422145128250122},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5349235534667969},{"id":"https://openalex.org/C136389625","wikidata":"https://www.wikidata.org/wiki/Q334384","display_name":"Supervised learning","level":3,"score":0.45895180106163025},{"id":"https://openalex.org/C49774154","wikidata":"https://www.wikidata.org/wiki/Q131765","display_name":"Multimedia","level":1,"score":0.34169983863830566},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3335534930229187},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32625237107276917},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baac104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac104","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac104/47779573/baac104.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:36484479","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36484479","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9732843","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9732843","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baac104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac104","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac104/47779573/baac104.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5799999833106995}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4311587210.pdf","grobid_xml":"https://content.openalex.org/works/W4311587210.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W150278719","https://openalex.org/W1015675232","https://openalex.org/W1566289585","https://openalex.org/W1969954772","https://openalex.org/W1978707534","https://openalex.org/W1997423738","https://openalex.org/W2095976990","https://openalex.org/W2121516710","https://openalex.org/W2130287326","https://openalex.org/W2150874198","https://openalex.org/W2240029300","https://openalex.org/W2616720367","https://openalex.org/W2763807380","https://openalex.org/W2786693834","https://openalex.org/W2896457183","https://openalex.org/W2911926823","https://openalex.org/W2915676182","https://openalex.org/W2962739339","https://openalex.org/W2970771982","https://openalex.org/W2971594646","https://openalex.org/W2977849281","https://openalex.org/W2980646921","https://openalex.org/W2984100107","https://openalex.org/W2991067665","https://openalex.org/W2996849245","https://openalex.org/W3043016077","https://openalex.org/W3158969947","https://openalex.org/W3171727748","https://openalex.org/W3214997989","https://openalex.org/W4288079515","https://openalex.org/W4292779060","https://openalex.org/W6606005913","https://openalex.org/W6633714834","https://openalex.org/W6642666630","https://openalex.org/W6755207826","https://openalex.org/W6778883912"],"related_works":["https://openalex.org/W4390273403","https://openalex.org/W4386781444","https://openalex.org/W2150182025","https://openalex.org/W3092950680","https://openalex.org/W3197542405","https://openalex.org/W2056712470","https://openalex.org/W3125580266","https://openalex.org/W4288390103","https://openalex.org/W4317039510","https://openalex.org/W4238861846"],"abstract_inverted_index":{"The":[0,197],"scientific":[1],"literature":[2,33],"continues":[3],"to":[4,27,55,64,85,110,163,194,227,240,255],"grow":[5],"at":[6],"an":[7],"ever-increasing":[8],"rate.":[9],"Considering":[10],"that":[11,42,190],"thousands":[12],"of":[13,88,91,151,221],"new":[14],"articles":[15,166],"are":[16,76,237],"published":[17,32],"every":[18],"week,":[19],"it":[20,25,185,226],"is":[21,26,153,174,200],"obvious":[22],"how":[23],"challenging":[24],"keep":[28],"up":[29],"with":[30,124,181],"newly":[31],"on":[34,202,244],"a":[35,39,53,66,93,149,161,177,217,245,251],"regular":[36],"basis.":[37,247],"Using":[38],"recommender":[40,69],"system":[41,84],"improves":[43],"the":[44,48,59,74,89,120,132,146,182,188,191,204,211,228,267,271],"user":[45],"experience":[46],"in":[47,99],"online":[49,257],"environment":[50],"can":[51],"be":[52,86],"solution":[54],"this":[56,100,195],"problem.":[57],"In":[58,145],"present":[60],"study,":[61],"we":[62,81],"aimed":[63],"develop":[65],"web-based":[67],"article":[68,112,222,235],"service,":[70],"called":[71],"Emati.":[72],"Since":[73],"data":[75],"text-based":[77],"by":[78,231,270],"nature":[79],"and":[80,131,158,224,262,265],"wanted":[82],"our":[83],"independent":[87],"number":[90],"users,":[92],"content-based":[94],"approach":[95,199],"has":[96,107,250],"been":[97,108,143],"adopted":[98],"study.":[101],"A":[102],"supervised":[103,116],"machine":[104],"learning":[105,117],"model":[106,123,135,208],"proposed":[109],"generate":[111],"recommendations.":[113],"Two":[114],"different":[115],"approaches,":[118],"namely":[119],"na\u00efve":[121,171],"Bayes":[122,172],"Term":[125],"Frequency-Inverse":[126],"Document":[127],"Frequency":[128],"(TF-IDF)":[129],"vectorizer":[130],"state-of-the-art":[133,206],"language":[134,207],"bidirectional":[136],"encoder":[137],"representations":[138],"from":[139,167],"transformers":[140],"(BERT),":[141],"have":[142,266],"implemented.":[144],"first":[147],"one,":[148],"list":[150,220],"documents":[152],"converted":[154],"into":[155,160],"TF-IDF-weighted":[156],"features":[157],"fed":[159],"classifier":[162,178],"distinguish":[164],"relevant":[165],"irrelevant":[168],"ones.":[169],"Multinomial":[170],"algorithm":[173],"used":[175],"as":[176,260],"since,":[179],"along":[180],"class":[183],"label,":[184],"also":[186,238],"gives":[187],"probability":[189,232],"input":[192],"belongs":[193],"class.":[196],"second":[198],"based":[201],"fine-tuning":[203],"pretrained":[205],"BERT":[209],"for":[210],"text":[212],"classification":[213],"task.":[214],"Emati":[215,249],"provides":[216],"weekly":[218,246],"updated":[219],"recommendations":[223,236],"presents":[225],"user,":[229],"sorted":[230,269],"scores.":[233],"New":[234],"sent":[239],"users'":[241],"email":[242],"addresses":[243],"Additionally,":[248],"personalized":[252],"search":[253,256],"feature":[254],"services'":[258],"(such":[259],"PubMed":[261],"arXiv)":[263],"content":[264],"results":[268],"user's":[272],"classifier.":[273],"Database":[274],"URL:":[275],"https://emati.biotec.tu-dresden.de.":[276]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}