{"id":"https://openalex.org/W4309659061","doi":"https://doi.org/10.1093/database/baac098","title":"Chemical\u2013protein relation extraction with ensembles of carefully tuned pretrained language models","display_name":"Chemical\u2013protein relation extraction with ensembles of carefully tuned pretrained language models","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4309659061","doi":"https://doi.org/10.1093/database/baac098","pmid":"https://pubmed.ncbi.nlm.nih.gov/36399413"},"language":"en","primary_location":{"id":"doi:10.1093/database/baac098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac098","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac098/47131901/baac098.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac098/47131901/baac098.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041680406","display_name":"Leon Weber","orcid":"https://orcid.org/0000-0002-2499-472X"},"institutions":[{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Leon Weber","raw_affiliation_strings":["Computer Science, Humboldt-Universit\u00e4t zu Berlin , Unter den Linden 6, Berlin 10099, Germany","Group Mathematical Modelling of Cellular Processes, Max Delbr\u00fcck Center for Molecular Medicine in the Helmholtz Association , Robert-R\u00f6ssle-Stra\u00dfe 10, Berlin 13125, Germany"],"raw_orcid":"https://orcid.org/0000-0002-2499-472X","affiliations":[{"raw_affiliation_string":"Computer Science, Humboldt-Universit\u00e4t zu Berlin , Unter den Linden 6, Berlin 10099, Germany","institution_ids":["https://openalex.org/I39343248"]},{"raw_affiliation_string":"Group Mathematical Modelling of Cellular Processes, Max Delbr\u00fcck Center for Molecular Medicine in the Helmholtz Association , Robert-R\u00f6ssle-Stra\u00dfe 10, Berlin 13125, Germany","institution_ids":["https://openalex.org/I205582932"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017484078","display_name":"Mario S\u00e4nger","orcid":"https://orcid.org/0000-0002-2950-2587"},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mario S\u00e4nger","raw_affiliation_strings":["Computer Science, Humboldt-Universit\u00e4t zu Berlin , Unter den Linden 6, Berlin 10099, Germany"],"raw_orcid":"https://orcid.org/0000-0002-2950-2587","affiliations":[{"raw_affiliation_string":"Computer Science, Humboldt-Universit\u00e4t zu Berlin , Unter den Linden 6, Berlin 10099, Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003047299","display_name":"Samuele Garda","orcid":"https://orcid.org/0009-0002-8234-8299"},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Samuele Garda","raw_affiliation_strings":["Computer Science, Humboldt-Universit\u00e4t zu Berlin , Unter den Linden 6, Berlin 10099, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science, Humboldt-Universit\u00e4t zu Berlin , Unter den Linden 6, Berlin 10099, Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039156783","display_name":"Fabio Barth","orcid":null},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fabio Barth","raw_affiliation_strings":["Computer Science, Humboldt-Universit\u00e4t zu Berlin , Unter den Linden 6, Berlin 10099, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science, Humboldt-Universit\u00e4t zu Berlin , Unter den Linden 6, Berlin 10099, Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102931078","display_name":"Christoph Alt","orcid":"https://orcid.org/0000-0001-8897-5205"},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christoph Alt","raw_affiliation_strings":["Computer Science, Humboldt-Universit\u00e4t zu Berlin , Unter den Linden 6, Berlin 10099, Germany","Research Cluster of Excellence, Science of Intelligence , Marchstr. 23, Berlin 10587, Germany","Research Cluster of Excellence, Science of Intelligence, Marchstr. 23, Berlin 10587, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science, Humboldt-Universit\u00e4t zu Berlin , Unter den Linden 6, Berlin 10099, Germany","institution_ids":["https://openalex.org/I39343248"]},{"raw_affiliation_string":"Research Cluster of Excellence, Science of Intelligence , Marchstr. 23, Berlin 10587, Germany","institution_ids":[]},{"raw_affiliation_string":"Research Cluster of Excellence, Science of Intelligence, Marchstr. 23, Berlin 10587, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055236937","display_name":"Ulf Leser","orcid":"https://orcid.org/0000-0003-2166-9582"},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Ulf Leser","raw_affiliation_strings":["Computer Science, Humboldt-Universit\u00e4t zu Berlin , Unter den Linden 6, Berlin 10099, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science, Humboldt-Universit\u00e4t zu Berlin , Unter den Linden 6, Berlin 10099, Germany","institution_ids":["https://openalex.org/I39343248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5041680406","https://openalex.org/A5055236937"],"corresponding_institution_ids":["https://openalex.org/I205582932","https://openalex.org/I39343248"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.2993,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.79794738,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"2022","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8417030572891235},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.6232863664627075},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.6228140592575073},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5779622793197632},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5438438653945923},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.5258779525756836},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5245944857597351},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.5070974826812744},{"id":"https://openalex.org/keywords/hyperparameter","display_name":"Hyperparameter","score":0.49880146980285645},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.48784852027893066},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.47836679220199585},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.44098830223083496},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.42655301094055176},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40843942761421204},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34142765402793884}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8417030572891235},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.6232863664627075},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.6228140592575073},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5779622793197632},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5438438653945923},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.5258779525756836},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5245944857597351},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.5070974826812744},{"id":"https://openalex.org/C8642999","wikidata":"https://www.wikidata.org/wiki/Q4171168","display_name":"Hyperparameter","level":2,"score":0.49880146980285645},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.48784852027893066},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.47836679220199585},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.44098830223083496},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.42655301094055176},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40843942761421204},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34142765402793884},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baac098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac098","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac098/47131901/baac098.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:36399413","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36399413","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:edoc.mdc-berlin.de:22827","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:edoc.hu-berlin.de:18452/28803","is_oa":true,"landing_page_url":"http://edoc.hu-berlin.de/18452/28803","pdf_url":null,"source":{"id":"https://openalex.org/S4306400923","display_name":"edoc Publication server (Humboldt University of Berlin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39343248","host_organization_name":"Humboldt-Universit\u00e4t zu Berlin","host_organization_lineage":["https://openalex.org/I39343248"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9674024","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9674024","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"doi:10.18452/28150","is_oa":true,"landing_page_url":"https://doi.org/10.18452/28150","pdf_url":null,"source":{"id":"https://openalex.org/S4306400923","display_name":"edoc Publication server (Humboldt University of Berlin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39343248","host_organization_name":"Humboldt-Universit\u00e4t zu Berlin","host_organization_lineage":["https://openalex.org/I39343248"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/database/baac098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac098","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac098/47131901/baac098.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.7599999904632568,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G3221473735","display_name":null,"funder_award_id":"EXC 2002/1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4179173110","display_name":null,"funder_award_id":"Excellence Strategy-EXC 2002/1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6532450817","display_name":null,"funder_award_id":"EXC 2002","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4309659061.pdf","grobid_xml":"https://content.openalex.org/works/W4309659061.grobid-xml"},"referenced_works_count":83,"referenced_works":["https://openalex.org/W114730584","https://openalex.org/W1493270114","https://openalex.org/W1522301498","https://openalex.org/W1533230146","https://openalex.org/W1538085078","https://openalex.org/W1665214252","https://openalex.org/W1954715867","https://openalex.org/W2010604520","https://openalex.org/W2048059249","https://openalex.org/W2052250375","https://openalex.org/W2095705004","https://openalex.org/W2097352005","https://openalex.org/W2107598941","https://openalex.org/W2129113459","https://openalex.org/W2346452181","https://openalex.org/W2432356473","https://openalex.org/W2559034752","https://openalex.org/W2583911935","https://openalex.org/W2767891136","https://openalex.org/W2773309042","https://openalex.org/W2795129839","https://openalex.org/W2888519496","https://openalex.org/W2891417293","https://openalex.org/W2911489562","https://openalex.org/W2921027260","https://openalex.org/W2923261428","https://openalex.org/W2946690328","https://openalex.org/W2950342274","https://openalex.org/W2950851846","https://openalex.org/W2952402849","https://openalex.org/W2958127121","https://openalex.org/W2963545917","https://openalex.org/W2964046515","https://openalex.org/W2964193968","https://openalex.org/W2965373594","https://openalex.org/W2970295111","https://openalex.org/W2971296908","https://openalex.org/W3013838212","https://openalex.org/W3016358231","https://openalex.org/W3034229721","https://openalex.org/W3034238904","https://openalex.org/W3040936192","https://openalex.org/W3045642779","https://openalex.org/W3046075728","https://openalex.org/W3046375318","https://openalex.org/W3082928416","https://openalex.org/W3093194543","https://openalex.org/W3100452049","https://openalex.org/W3112376646","https://openalex.org/W3116070535","https://openalex.org/W3125468681","https://openalex.org/W3166204619","https://openalex.org/W3210331473","https://openalex.org/W3213849509","https://openalex.org/W6604629408","https://openalex.org/W6629460809","https://openalex.org/W6631190155","https://openalex.org/W6631964550","https://openalex.org/W6637242042","https://openalex.org/W6640904281","https://openalex.org/W6653109512","https://openalex.org/W6674330103","https://openalex.org/W6674437472","https://openalex.org/W6675985199","https://openalex.org/W6718112784","https://openalex.org/W6726890095","https://openalex.org/W6732491067","https://openalex.org/W6751914952","https://openalex.org/W6753838432","https://openalex.org/W6754733053","https://openalex.org/W6755912153","https://openalex.org/W6758085808","https://openalex.org/W6763720034","https://openalex.org/W6766673545","https://openalex.org/W6767844612","https://openalex.org/W6776277508","https://openalex.org/W6776781563","https://openalex.org/W6781649520","https://openalex.org/W6782410572","https://openalex.org/W6785110541","https://openalex.org/W6788215587","https://openalex.org/W6795688271","https://openalex.org/W6804238033"],"related_works":["https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W842810586","https://openalex.org/W2092919065","https://openalex.org/W4236762297","https://openalex.org/W3138801416","https://openalex.org/W2369351710","https://openalex.org/W2594363579","https://openalex.org/W2169232658","https://openalex.org/W2444550338"],"abstract_inverted_index":{"The":[0,37,191],"identification":[1],"of":[2,24,52,121,175,183,197,211],"chemical-protein":[3,53],"interactions":[4],"described":[5],"in":[6,15,215],"the":[7,28,49,64,70,75,122,126,145,187,200,207,216],"literature":[8,30],"is":[9,31,170],"an":[10,130,173,194],"important":[11],"task":[12,42,66,76],"with":[13,85,96],"applications":[14],"drug":[16],"design,":[17],"precision":[18],"medicine":[19],"and":[20,33,67,99,125,143,159,179,205],"biotechnology.":[21],"Manual":[22],"extraction":[23,51,114],"such":[25],"relationships":[26],"from":[27,55,103,186],"biomedical":[29],"costly":[32],"often":[34],"prohibitively":[35],"time-consuming.":[36],"BioCreative":[38],"VII":[39],"DrugProt":[40,202],"shared":[41,65],"provides":[43],"a":[44,78,118],"benchmark":[45],"for":[46,48,152],"methods":[47],"automated":[50],"relations":[54],"scientific":[56],"text.":[57],"Here":[58],"we":[59,83,94],"describe":[60],"our":[61],"contribution":[62],"to":[63,112,135],"report":[68],"on":[69,172,199],"achieved":[71],"results.":[72,166],"We":[73,116,139],"define":[74],"as":[77,106,108],"relation":[79],"classification":[80],"problem,":[81],"which":[82],"approach":[84],"pretrained":[86,147,177],"transformer":[87],"language":[88,148],"models.":[89],"Upon":[90],"this":[91],"basic":[92],"architecture,":[93],"experiment":[95],"utilizing":[97],"textual":[98,181],"embedded":[100,160],"side":[101,161],"information":[102,162],"knowledge":[104],"bases":[105],"well":[107],"additional":[109,157,180],"training":[110],"data":[111,158],"improve":[113,165],"performance.":[115],"perform":[117],"comprehensive":[119],"evaluation":[120],"proposed":[123],"model":[124,149,169,192],"individual":[127],"extensions":[128],"including":[129],"extensive":[131],"hyperparameter":[132],"search":[133],"leading":[134],"2647":[136],"different":[137],"runs.":[138],"find":[140],"that":[141],"ensembling":[142],"choosing":[144],"right":[146],"are":[150],"crucial":[151],"optimal":[153],"performance,":[154],"whereas":[155],"adding":[156],"did":[163],"not":[164],"Our":[167],"best":[168],"based":[171],"ensemble":[174],"10":[176],"transformers":[178],"descriptions":[182],"chemicals":[184],"taken":[185],"Comparative":[188],"Toxicogenomics":[189],"Database.":[190],"reaches":[193],"F1":[195],"score":[196],"79.73%":[198],"hidden":[201],"test":[203],"set":[204],"achieves":[206],"first":[208],"rank":[209],"out":[210],"107":[212],"submitted":[213],"runs":[214],"official":[217],"evaluation.":[218],"Database":[219],"URL:":[220],"https://github.com/leonweber/drugprot.":[221]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
