{"id":"https://openalex.org/W4293105538","doi":"https://doi.org/10.1093/database/baac070","title":"Do syntactic trees enhance Bidirectional Encoder Representations from Transformers (BERT) models for chemical\u2013drug relation extraction?","display_name":"Do syntactic trees enhance Bidirectional Encoder Representations from Transformers (BERT) models for chemical\u2013drug relation extraction?","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4293105538","doi":"https://doi.org/10.1093/database/baac070","pmid":"https://pubmed.ncbi.nlm.nih.gov/36006843"},"language":"en","primary_location":{"id":"doi:10.1093/database/baac070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac070","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac070/45535391/baac070.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac070/45535391/baac070.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023118326","display_name":"Anfu Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Anfu Tang","raw_affiliation_strings":["CNRS, Laboratoire interdisciplinaire des sciences du num\u00e9rique, Universit\u00e9 Paris-Saclay , Campus universitaire b\u00e2t 507, Rue du Belved\u00e8re, Orsay 91405, France","INRAE, MaIAGE, Universit\u00e9 Paris-Saclay , Domaine de Vilvert, Jouy-en-Josas 78352, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, Laboratoire interdisciplinaire des sciences du num\u00e9rique, Universit\u00e9 Paris-Saclay , Campus universitaire b\u00e2t 507, Rue du Belved\u00e8re, Orsay 91405, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"INRAE, MaIAGE, Universit\u00e9 Paris-Saclay , Domaine de Vilvert, Jouy-en-Josas 78352, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059209944","display_name":"Louise Del\u00e9ger","orcid":"https://orcid.org/0000-0003-1399-4828"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Louise Del\u00e9ger","raw_affiliation_strings":["INRAE, MaIAGE, Universit\u00e9 Paris-Saclay , Domaine de Vilvert, Jouy-en-Josas 78352, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRAE, MaIAGE, Universit\u00e9 Paris-Saclay , Domaine de Vilvert, Jouy-en-Josas 78352, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083008473","display_name":"Robert Bossy","orcid":"https://orcid.org/0000-0001-6652-9319"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Robert Bossy","raw_affiliation_strings":["INRAE, MaIAGE, Universit\u00e9 Paris-Saclay , Domaine de Vilvert, Jouy-en-Josas 78352, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRAE, MaIAGE, Universit\u00e9 Paris-Saclay , Domaine de Vilvert, Jouy-en-Josas 78352, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090195478","display_name":"Pierre Zweigenbaum","orcid":"https://orcid.org/0000-0001-8410-4808"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Zweigenbaum","raw_affiliation_strings":["CNRS, Laboratoire interdisciplinaire des sciences du num\u00e9rique, Universit\u00e9 Paris-Saclay , Campus universitaire b\u00e2t 507, Rue du Belved\u00e8re, Orsay 91405, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, Laboratoire interdisciplinaire des sciences du num\u00e9rique, Universit\u00e9 Paris-Saclay , Campus universitaire b\u00e2t 507, Rue du Belved\u00e8re, Orsay 91405, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063577222","display_name":"Claire N\u00e9dellec","orcid":"https://orcid.org/0000-0002-0577-0595"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Claire N\u00e9dellec","raw_affiliation_strings":["INRAE, MaIAGE, Universit\u00e9 Paris-Saclay , Domaine de Vilvert, Jouy-en-Josas 78352, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRAE, MaIAGE, Universit\u00e9 Paris-Saclay , Domaine de Vilvert, Jouy-en-Josas 78352, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210088668"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5023118326"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210088668"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1756,"currency":"EUR","value_usd":1893},"fwci":0.1732,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.48096914,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"2022","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8929437398910522},{"id":"https://openalex.org/keywords/abstract-syntax-tree","display_name":"Abstract syntax tree","score":0.7501343488693237},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6884270906448364},{"id":"https://openalex.org/keywords/syntax","display_name":"Syntax","score":0.6725572943687439},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.630434513092041},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.6186778545379639},{"id":"https://openalex.org/keywords/abstract-syntax","display_name":"Abstract syntax","score":0.6138237714767456},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.5994917750358582},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.5755476951599121},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.5125424861907959},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5105960965156555},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4351779818534851},{"id":"https://openalex.org/keywords/syntax-error","display_name":"Syntax error","score":0.4345894753932953},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.26159942150115967}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8929437398910522},{"id":"https://openalex.org/C58646249","wikidata":"https://www.wikidata.org/wiki/Q127380","display_name":"Abstract syntax tree","level":3,"score":0.7501343488693237},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6884270906448364},{"id":"https://openalex.org/C60048249","wikidata":"https://www.wikidata.org/wiki/Q37437","display_name":"Syntax","level":2,"score":0.6725572943687439},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.630434513092041},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.6186778545379639},{"id":"https://openalex.org/C114408938","wikidata":"https://www.wikidata.org/wiki/Q333373","display_name":"Abstract syntax","level":3,"score":0.6138237714767456},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.5994917750358582},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.5755476951599121},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.5125424861907959},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5105960965156555},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4351779818534851},{"id":"https://openalex.org/C11742125","wikidata":"https://www.wikidata.org/wiki/Q1195374","display_name":"Syntax error","level":4,"score":0.4345894753932953},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.26159942150115967},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baac070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac070","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac070/45535391/baac070.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:36006843","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36006843","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:HAL:hal-03799268v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03799268","pdf_url":"https://hal.science/hal-03799268v1/file/Tang_DATABASE2022.pdf","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/database/article/doi/10.1093/database/baac070/6675625","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:9408061","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9408061","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baac070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac070","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac070/45535391/baac070.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3024506935","display_name":null,"funder_award_id":"ANR-11-IDEX-0003","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4585338298","display_name":null,"funder_award_id":"11-IDEX-0003-02","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4866930200","display_name":null,"funder_award_id":"ANR-11-IDEX","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6187605657","display_name":null,"funder_award_id":"ANR-11-IDEX-0003-02","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4293105538.pdf"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W2163107094","https://openalex.org/W2759211898","https://openalex.org/W2911489562","https://openalex.org/W2946359678","https://openalex.org/W2948771346","https://openalex.org/W2950621961","https://openalex.org/W2952768212","https://openalex.org/W2962788148","https://openalex.org/W2963084773","https://openalex.org/W2963341956","https://openalex.org/W2970771982","https://openalex.org/W2979826702","https://openalex.org/W3008282111","https://openalex.org/W3116238564","https://openalex.org/W3153543512","https://openalex.org/W3173561451","https://openalex.org/W3173854146","https://openalex.org/W4295312788","https://openalex.org/W4385245566","https://openalex.org/W6626481562","https://openalex.org/W6631190155","https://openalex.org/W6727690538","https://openalex.org/W6739901393","https://openalex.org/W6750659034","https://openalex.org/W6763527631","https://openalex.org/W6766978945","https://openalex.org/W6771313149"],"related_works":["https://openalex.org/W1625533892","https://openalex.org/W2077104824","https://openalex.org/W2613250302","https://openalex.org/W1988370859","https://openalex.org/W2005927140","https://openalex.org/W2390632043","https://openalex.org/W2070761870","https://openalex.org/W203914360","https://openalex.org/W1760151458","https://openalex.org/W2536864162"],"abstract_inverted_index":{"Collecting":[0],"relations":[1],"between":[2],"chemicals":[3],"and":[4,84,92,126,133,152],"drugs":[5],"is":[6,22,90,102,120,188,202],"crucial":[7],"in":[8,86,98,163,170],"biomedical":[9,28,42,174],"research.":[10],"The":[11],"pre-trained":[12,54],"transformer":[13,55],"model,":[14],"e.g.":[15],"Bidirectional":[16],"Encoder":[17],"Representations":[18],"from":[19,41],"Transformers":[20],"(BERT),":[21],"shown":[23],"to":[24],"have":[25],"limitations":[26],"on":[27,65,78,139],"texts;":[29],"more":[30],"specifically,":[31],"the":[32,79,140,150,166,171,178,181,193,211],"lack":[33],"of":[34,154,168,173,184,195,197,213],"annotated":[35,147],"data":[36],"makes":[37],"relation":[38,187],"extraction":[39],"(RE)":[40],"texts":[43],"very":[44],"challenging.":[45],"In":[46],"this":[47,70],"paper,":[48],"we":[49,72,113],"hypothesize":[50],"that":[51,160],"enriching":[52],"a":[53,93,145],"model":[56,117],"with":[57],"syntactic":[58,100,123],"information":[59,89,101,125],"may":[60],"help":[61],"improve":[62,177],"its":[63],"performance":[64,167,179],"chemical-drug":[66],"RE":[67,155,175],"tasks.":[68],"For":[69],"purpose,":[71],"propose":[73],"three":[74],"syntax-enhanced":[75,131,161],"models":[76,132,162],"based":[77],"domain-specific":[80],"BioBERT":[81,169],"model:":[82],"Chunking-Enhanced-BioBERT":[83],"Constituency-Tree-BioBERT":[85],"which":[87,99,119],"constituency":[88],"integrated":[91],"Multi-Task-Learning":[94],"framework":[95],"Multi-Task-Syntactic":[96],"(MTS)-BioBERT":[97],"injected":[103],"implicitly":[104],"by":[105,122],"adding":[106],"syntax-related":[107],"tasks":[108],"as":[109],"training":[110],"objectives.":[111],"Besides,":[112],"test":[114],"an":[115],"existing":[116],"Late-Fusion":[118],"enhanced":[121],"dependency":[124,198],"build":[127],"ensemble":[128],"systems":[129],"combining":[130],"non-syntax-enhanced":[134],"models.":[135],"Experiments":[136],"are":[137],"conducted":[138],"BioCreative":[141],"VII":[142],"DrugProt":[143],"corpus,":[144],"manually":[146],"corpus":[148],"for":[149],"development":[151],"evaluation":[153],"systems.":[156],"Our":[157],"results":[158],"reveal":[159],"general":[164],"degrade":[165],"scenario":[172],"but":[176],"when":[180],"subject-object":[182],"distance":[183],"candidate":[185],"semantic":[186],"long.":[189],"We":[190],"also":[191],"explore":[192],"impact":[194],"quality":[196],"parses.":[199],"[Our":[200],"code":[201],"available":[203],"at:":[204],"https://github.com/Maple177/syntax-enhanced-RE/tree/drugprot":[205],"(for":[206,210],"only":[207],"MTS-BioBERT);":[208],"https://github.com/Maple177/drugprot-relation-extraction":[209],"rest":[212],"experiments)]":[214],"Database":[215],"URL":[216],"https://github.com/Maple177/drugprot-relation-extraction.":[217]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}
