{"id":"https://openalex.org/W4292773544","doi":"https://doi.org/10.1093/database/baac067","title":"Task reformulation and data-centric approach for Twitter medication name extraction","display_name":"Task reformulation and data-centric approach for Twitter medication name extraction","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4292773544","doi":"https://doi.org/10.1093/database/baac067","pmid":"https://pubmed.ncbi.nlm.nih.gov/35998105"},"language":"en","primary_location":{"id":"doi:10.1093/database/baac067","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac067","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac067/45503092/baac067.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac067/45503092/baac067.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100433563","display_name":"Yu Zhang","orcid":"https://orcid.org/0000-0002-4934-5873"},"institutions":[{"id":"https://openalex.org/I22265921","display_name":"National Central University","ror":"https://ror.org/00944ve71","country_code":"TW","type":"education","lineage":["https://openalex.org/I22265921"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yu Zhang","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Central University , No. 300, Zhongda Rd., Zhongli Dist., Taoyuan City 32001, Taiwan"],"raw_orcid":"https://orcid.org/0000-0002-4934-5873","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Central University , No. 300, Zhongda Rd., Zhongli Dist., Taoyuan City 32001, Taiwan","institution_ids":["https://openalex.org/I22265921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114028194","display_name":"Jong Kang Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I22265921","display_name":"National Central University","ror":"https://ror.org/00944ve71","country_code":"TW","type":"education","lineage":["https://openalex.org/I22265921"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jong Kang Lee","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Central University , No. 300, Zhongda Rd., Zhongli Dist., Taoyuan City 32001, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Central University , No. 300, Zhongda Rd., Zhongli Dist., Taoyuan City 32001, Taiwan","institution_ids":["https://openalex.org/I22265921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037000720","display_name":"Jen-Chieh Han","orcid":"https://orcid.org/0000-0003-0998-4539"},"institutions":[{"id":"https://openalex.org/I22265921","display_name":"National Central University","ror":"https://ror.org/00944ve71","country_code":"TW","type":"education","lineage":["https://openalex.org/I22265921"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jen-Chieh Han","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Central University , No. 300, Zhongda Rd., Zhongli Dist., Taoyuan City 32001, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Central University , No. 300, Zhongda Rd., Zhongli Dist., Taoyuan City 32001, Taiwan","institution_ids":["https://openalex.org/I22265921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030771512","display_name":"Richard Tzong\u2010Han Tsai","orcid":"https://orcid.org/0000-0003-0513-107X"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I22265921","display_name":"National Central University","ror":"https://ror.org/00944ve71","country_code":"TW","type":"education","lineage":["https://openalex.org/I22265921"]},{"id":"https://openalex.org/I4210150355","display_name":"Research Center for Humanities and Social Sciences, Academia Sinica","ror":"https://ror.org/05n4swm55","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210150355","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Richard Tzong-Han Tsai","raw_affiliation_strings":["Center for GIS, Research Center for Humanities and Social Sciences, Academia Sinica , 128 Academia Road, Section 2, Nankang, Taipei 11529, Taiwan","Department of Computer Science and Information Engineering, National Central University , No. 300, Zhongda Rd., Zhongli Dist., Taoyuan City 32001, Taiwan","IoX Center, National Taiwan University , No. 1, Sec. 4, Roosevelt Rd., Taipei 10617, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for GIS, Research Center for Humanities and Social Sciences, Academia Sinica , 128 Academia Road, Section 2, Nankang, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I4210150355"]},{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Central University , No. 300, Zhongda Rd., Zhongli Dist., Taoyuan City 32001, Taiwan","institution_ids":["https://openalex.org/I22265921"]},{"raw_affiliation_string":"IoX Center, National Taiwan University , No. 1, Sec. 4, Roosevelt Rd., Taipei 10617, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5030771512"],"corresponding_institution_ids":["https://openalex.org/I16733864","https://openalex.org/I22265921","https://openalex.org/I4210150355"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.2774,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.62747237,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"2022","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.840768039226532},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.7316441535949707},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6213214993476868},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5923299789428711},{"id":"https://openalex.org/keywords/baseline","display_name":"Baseline (sea)","score":0.5555551052093506},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.551449179649353},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5348699688911438},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.496615469455719},{"id":"https://openalex.org/keywords/sequence-labeling","display_name":"Sequence labeling","score":0.49190616607666016},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.47320765256881714},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.4632061719894409},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4186890125274658}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.840768039226532},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.7316441535949707},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6213214993476868},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5923299789428711},{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.5555551052093506},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.551449179649353},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5348699688911438},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.496615469455719},{"id":"https://openalex.org/C35639132","wikidata":"https://www.wikidata.org/wiki/Q7452468","display_name":"Sequence labeling","level":3,"score":0.49190616607666016},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47320765256881714},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.4632061719894409},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4186890125274658},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C111368507","wikidata":"https://www.wikidata.org/wiki/Q43518","display_name":"Oceanography","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D061108","descriptor_name":"Social Media","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D061108","descriptor_name":"Social Media","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D061108","descriptor_name":"Social Media","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D061108","descriptor_name":"Social Media","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baac067","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac067","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac067/45503092/baac067.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:35998105","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35998105","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9397573","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9397573","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baac067","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac067","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac067/45503092/baac067.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.49000000953674316,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2205640134","display_name":null,"funder_award_id":"MOST 109","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G3862518167","display_name":null,"funder_award_id":"MOST 109-","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G4062893345","display_name":null,"funder_award_id":"E-008-062-MY3","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G8985157498","display_name":null,"funder_award_id":"MOST 109-2221","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"}],"funders":[{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4292773544.pdf","grobid_xml":"https://content.openalex.org/works/W4292773544.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W2143933463","https://openalex.org/W2145111356","https://openalex.org/W2153848201","https://openalex.org/W2317693431","https://openalex.org/W2402532029","https://openalex.org/W2427527485","https://openalex.org/W2610937402","https://openalex.org/W2757947833","https://openalex.org/W2786015986","https://openalex.org/W2896457183","https://openalex.org/W2911489562","https://openalex.org/W2953902152","https://openalex.org/W2972736338","https://openalex.org/W2981573048","https://openalex.org/W3033187248","https://openalex.org/W3037156224","https://openalex.org/W3118356387","https://openalex.org/W3130627359","https://openalex.org/W3156669901","https://openalex.org/W3157374291","https://openalex.org/W3166508187","https://openalex.org/W3172540971","https://openalex.org/W4287269874","https://openalex.org/W4287394926","https://openalex.org/W4287776694","https://openalex.org/W4319062633","https://openalex.org/W4390849687","https://openalex.org/W4394657404","https://openalex.org/W6681931198","https://openalex.org/W6682707525","https://openalex.org/W6744639116","https://openalex.org/W6748162558","https://openalex.org/W6788498342"],"related_works":["https://openalex.org/W4399418584","https://openalex.org/W2334378031","https://openalex.org/W189110383","https://openalex.org/W2945210837","https://openalex.org/W2916255597","https://openalex.org/W2530283981","https://openalex.org/W2589080577","https://openalex.org/W3161409692","https://openalex.org/W4321523623","https://openalex.org/W2790360088"],"abstract_inverted_index":{"Automatically":[0],"extracting":[1,56],"medication":[2,43],"names":[3,44],"from":[4,45],"tweets":[5,33],"is":[6,34,107,115],"challenging":[7],"in":[8,58,69],"the":[9,30,46,59,74,89,110,119,133],"real":[10],"world.":[11],"There":[12],"are":[13,25,151],"many":[14],"tweets;":[15],"however,":[16],"only":[17],"a":[18,52,85,98,126],"small":[19],"proportion":[20],"mentions":[21],"medications.":[22],"Thus,":[23],"datasets":[24],"usually":[26],"highly":[27],"imbalanced.":[28],"Moreover,":[29,117],"length":[31],"of":[32,66,101,113,129],"very":[35],"short,":[36],"which":[37],"makes":[38],"it":[39],"hard":[40],"to":[41],"recognize":[42],"limited":[47],"context.":[48],"This":[49],"paper":[50],"proposes":[51],"data-centric":[53,149],"approach":[54,72],"for":[55,136,153],"medications":[57],"BioCreative":[60],"VII":[61],"Track":[62],"3":[63],"(Automatic":[64],"Extraction":[65],"Medication":[67],"Names":[68],"Tweets).":[70],"Our":[71],"formulates":[73],"sequence":[75],"labeling":[76],"problem":[77],"as":[78,146,148],"text":[79],"entailment":[80],"and":[81,91,109,122,131,141,159],"question-answer":[82],"tasks.":[83],"As":[84],"result,":[86],"without":[87],"using":[88],"dictionary":[90,120],"ensemble":[92,123],"method,":[93],"our":[94],"single":[95],"model":[96],"achieved":[97,125],"Strict":[99,127],"F1":[100,128],"0.77":[102],"(the":[103],"official":[104],"baseline":[105],"system":[106],"0.758,":[108],"average":[111],"performance":[112,135],"participants":[114],"0.696).":[116],"combining":[118],"filtering":[121],"method":[124],"0.804":[130],"had":[132],"highest":[134],"all":[137],"participants.":[138],"Furthermore,":[139],"domain-specific":[140],"task-specific":[142],"pretrained":[143],"language":[144],"models,":[145],"well":[147],"approaches,":[150],"proposed":[152],"further":[154],"improvements.":[155],"Database":[156],"URL":[157],"https://competitions.codalab.org/competitions/23925":[158],"https://biocreative.bioinformatics.udel.edu/tasks/biocreative-vii/track-3/.":[160]},"counts_by_year":[{"year":2024,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
