{"id":"https://openalex.org/W4292209017","doi":"https://doi.org/10.1093/database/baac061","title":"SC2sepsis: sepsis single-cell whole gene expression database","display_name":"SC2sepsis: sepsis single-cell whole gene expression database","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4292209017","doi":"https://doi.org/10.1093/database/baac061","pmid":"https://pubmed.ncbi.nlm.nih.gov/35980286"},"language":"en","primary_location":{"id":"doi:10.1093/database/baac061","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac061","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac061/45475631/baac061.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac061/45475631/baac061.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078318537","display_name":"Yinjiaozhi Li","orcid":null},"institutions":[{"id":"https://openalex.org/I2801556517","display_name":"Ruijin Hospital","ror":"https://ror.org/01hv94n30","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2801556517"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yinjiaozhi Li","raw_affiliation_strings":["Department of Critical Care Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Critical Care Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China","institution_ids":["https://openalex.org/I2801556517"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102939392","display_name":"Ruoming Tan","orcid":"https://orcid.org/0000-0002-4815-0695"},"institutions":[{"id":"https://openalex.org/I2801556517","display_name":"Ruijin Hospital","ror":"https://ror.org/01hv94n30","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2801556517"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruoming Tan","raw_affiliation_strings":["Department of Critical Care Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Critical Care Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China","institution_ids":["https://openalex.org/I2801556517"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100350382","display_name":"Yang Chen","orcid":"https://orcid.org/0000-0001-9406-8273"},"institutions":[{"id":"https://openalex.org/I2801556517","display_name":"Ruijin Hospital","ror":"https://ror.org/01hv94n30","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2801556517"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Chen","raw_affiliation_strings":["Department of Critical Care Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Critical Care Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China","institution_ids":["https://openalex.org/I2801556517"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100399047","display_name":"Zhaojun Liu","orcid":"https://orcid.org/0000-0002-2301-0768"},"institutions":[{"id":"https://openalex.org/I2801556517","display_name":"Ruijin Hospital","ror":"https://ror.org/01hv94n30","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2801556517"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaojun Liu","raw_affiliation_strings":["Department of Critical Care Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Critical Care Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China","institution_ids":["https://openalex.org/I2801556517"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087690220","display_name":"Erzhen Chen","orcid":"https://orcid.org/0000-0001-7835-6080"},"institutions":[{"id":"https://openalex.org/I2801556517","display_name":"Ruijin Hospital","ror":"https://ror.org/01hv94n30","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2801556517"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Erzhen Chen","raw_affiliation_strings":["Department of Emergency Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China","institution_ids":["https://openalex.org/I2801556517"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011769256","display_name":"Tingting Pan","orcid":"https://orcid.org/0000-0001-6839-1384"},"institutions":[{"id":"https://openalex.org/I2801556517","display_name":"Ruijin Hospital","ror":"https://ror.org/01hv94n30","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2801556517"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tingting Pan","raw_affiliation_strings":["Department of Critical Care Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Critical Care Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China","institution_ids":["https://openalex.org/I2801556517"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001106455","display_name":"Hongping Qu","orcid":"https://orcid.org/0000-0002-2116-5125"},"institutions":[{"id":"https://openalex.org/I2801556517","display_name":"Ruijin Hospital","ror":"https://ror.org/01hv94n30","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2801556517"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hongping Qu","raw_affiliation_strings":["Department of Critical Care Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China"],"raw_orcid":"https://orcid.org/0000-0002-2116-5125","affiliations":[{"raw_affiliation_string":"Department of Critical Care Medicine, Ruijin Hospital, Shanghai Jiaotong University School of Medicine , No.197 Ruijin Er Road, Shanghai CN 200025, China","institution_ids":["https://openalex.org/I2801556517"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5001106455","https://openalex.org/A5011769256"],"corresponding_institution_ids":["https://openalex.org/I2801556517"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.4331,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.5871852,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2022","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9114000201225281,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9114000201225281,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10218","display_name":"Sepsis Diagnosis and Treatment","score":0.04809999838471413,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11597","display_name":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","score":0.012600000016391277,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sepsis","display_name":"Sepsis","score":0.8689550161361694},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.6850196719169617},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.6293411254882812},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.5903216600418091},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.48305898904800415},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46985140442848206},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4663378894329071},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4626302421092987},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.46098384261131287},{"id":"https://openalex.org/keywords/peripheral-blood-mononuclear-cell","display_name":"Peripheral blood mononuclear cell","score":0.425820916891098},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.4217955470085144},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32550108432769775},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.16979938745498657},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16042637825012207}],"concepts":[{"id":"https://openalex.org/C2778384902","wikidata":"https://www.wikidata.org/wiki/Q183134","display_name":"Sepsis","level":2,"score":0.8689550161361694},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6850196719169617},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.6293411254882812},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.5903216600418091},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.48305898904800415},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46985140442848206},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4663378894329071},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4626302421092987},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.46098384261131287},{"id":"https://openalex.org/C137061746","wikidata":"https://www.wikidata.org/wiki/Q736033","display_name":"Peripheral blood mononuclear cell","level":3,"score":0.425820916891098},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.4217955470085144},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32550108432769775},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.16979938745498657},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16042637825012207},{"id":"https://openalex.org/C202751555","wikidata":"https://www.wikidata.org/wiki/Q221681","display_name":"In vitro","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007963","descriptor_name":"Leukocytes, Mononuclear","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007963","descriptor_name":"Leukocytes, Mononuclear","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007963","descriptor_name":"Leukocytes, Mononuclear","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018805","descriptor_name":"Sepsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018805","descriptor_name":"Sepsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018805","descriptor_name":"Sepsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baac061","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac061","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac061/45475631/baac061.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:35980286","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35980286","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9387141","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9387141","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baac061","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac061","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac061/45475631/baac061.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1782763316","display_name":null,"funder_award_id":"81772107","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G4275965453","display_name":null,"funder_award_id":"18411950900","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5350874605","display_name":null,"funder_award_id":"SHDC2020CR1028B","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6185391958","display_name":null,"funder_award_id":"81772107","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8801205758","display_name":null,"funder_award_id":"18411950900","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G8862063711","display_name":null,"funder_award_id":"81772040","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"},{"id":"https://openalex.org/F4320325338","display_name":"Shanghai Hospital Development Center","ror":"https://ror.org/02zrtve16"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4292209017.pdf","grobid_xml":"https://content.openalex.org/works/W4292209017.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1574330564","https://openalex.org/W1680392829","https://openalex.org/W1977867207","https://openalex.org/W1979283544","https://openalex.org/W1988139284","https://openalex.org/W1991209345","https://openalex.org/W2038434279","https://openalex.org/W2098572294","https://openalex.org/W2110340892","https://openalex.org/W2164990391","https://openalex.org/W2223946157","https://openalex.org/W2278600110","https://openalex.org/W2280404143","https://openalex.org/W2316332996","https://openalex.org/W2332292689","https://openalex.org/W2523369352","https://openalex.org/W2614253029","https://openalex.org/W2755626276","https://openalex.org/W2765472239","https://openalex.org/W2774868879","https://openalex.org/W2775437905","https://openalex.org/W2890890047","https://openalex.org/W2895456557","https://openalex.org/W2907514116","https://openalex.org/W2931036699","https://openalex.org/W2942678593","https://openalex.org/W3032428915","https://openalex.org/W3135655003","https://openalex.org/W4226082026","https://openalex.org/W6637386731","https://openalex.org/W6647183717"],"related_works":["https://openalex.org/W2116016263","https://openalex.org/W2353446510","https://openalex.org/W2009966535","https://openalex.org/W2102579905","https://openalex.org/W2033995502","https://openalex.org/W2121331980","https://openalex.org/W4247273247","https://openalex.org/W3172964312","https://openalex.org/W1971124177","https://openalex.org/W3089353767"],"abstract_inverted_index":{"Sepsis,":[0],"one":[1],"of":[2,20,24,39,64,102,122,140,156,185],"the":[3,7,21,30,37,84,182],"major":[4,152],"challenges":[5],"in":[6,68],"intensive":[8],"care":[9],"unit,":[10],"is":[11,99,145,172],"characterized":[12],"by":[13],"complex":[14],"host":[15],"immune":[16,25,183],"status.":[17],"Improved":[18],"understandings":[19],"phenotypic":[22],"changes":[23],"cells":[26,127],"during":[27],"sepsis":[28,40,79],"and":[29,97,132,163,166],"driving":[31],"molecular":[32],"mechanisms":[33],"are":[34],"critical":[35],"to":[36,58,76,83,174,177],"elucidation":[38],"pathogenesis.":[41],"Single-cell":[42,111],"RNA":[43],"sequencing":[44],"(scRNA-seq),":[45],"which":[46,171],"interprets":[47],"transcriptome":[48],"at":[49],"a":[50,55,100,137,146],"single-cell":[51],"resolution,":[52],"serves":[53],"as":[54],"useful":[56],"tool":[57],"uncover":[59],"disease-related":[60],"gene":[61],"expression":[62],"signatures":[63],"different":[65],"cell":[66],"populations":[67],"various":[69],"diseases.":[70],"It":[71],"has":[72],"also":[73],"been":[74],"applied":[75],"studies":[77,89],"on":[78],"immunopathological":[80],"mechanisms.":[81],"Due":[82],"fact":[85],"that":[86],"most":[87],"sepsis-related":[88],"utilizing":[90],"scRNA-seq":[91,104,120],"have":[92],"very":[93],"small":[94],"sample":[95],"sizes":[96],"there":[98],"lack":[101],"an":[103],"database":[105,149],"for":[106],"sepsis,":[107],"we":[108],"developed":[109],"Sepsis":[110],"Whole":[112],"Gene":[113],"Expression":[114],"Database":[115],"Website":[116],"(SC2sepsis)":[117],"(http://www.rjh-sc2sepsis.com/),":[118],"integrating":[119],"datasets":[121],"human":[123],"peripheral":[124],"blood":[125],"mononuclear":[126],"from":[128],"45":[129],"septic":[130],"patients":[131],"26":[133],"healthy":[134,164],"controls,":[135],"with":[136,150],"total":[138],"amount":[139],"232":[141],"226":[142],"cells.":[143],"SC2sepsis":[144],"comprehensive":[147],"resource":[148],"two":[151],"features:":[153],"(i)":[154],"retrieval":[155],"1988":[157],"differentially":[158],"expressed":[159],"genes":[160],"between":[161],"pathological":[162],"conditions":[165],"(ii)":[167],"automatic":[168],"cell-type":[169],"annotation,":[170],"expected":[173],"facilitate":[175],"researchers":[176],"gain":[178],"more":[179],"insights":[180],"into":[181],"dysregulation":[184],"sepsis.":[186],"DATABASE":[187],"URL:":[188],"http://www.rjh-sc2sepsis.com/.":[189]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-29T09:21:14.243279","created_date":"2025-10-10T00:00:00"}
