{"id":"https://openalex.org/W4288054457","doi":"https://doi.org/10.1093/database/baac053","title":"Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues","display_name":"Structural signatures: a web server for exploring a database of and generating protein structural features from human cell lines and tissues","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4288054457","doi":"https://doi.org/10.1093/database/baac053","pmid":"https://pubmed.ncbi.nlm.nih.gov/35881481"},"language":"en","primary_location":{"id":"doi:10.1093/database/baac053","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac053","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac053/45084040/baac053.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac053/45084040/baac053.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012745368","display_name":"Nicole Zatorski","orcid":"https://orcid.org/0000-0001-5697-4056"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nicole Zatorski","raw_affiliation_strings":["Department of Pharmacological Sciences, Institute for Systems Biomedicine Icahn School of Medicine at Mount Sinai , One Gustave L. Levy Place, Box 1677 New York, NY 10029, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacological Sciences, Institute for Systems Biomedicine Icahn School of Medicine at Mount Sinai , One Gustave L. Levy Place, Box 1677 New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074649662","display_name":"David Stein","orcid":"https://orcid.org/0000-0002-5131-8313"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Stein","raw_affiliation_strings":["Department of Pharmacological Sciences, Institute for Systems Biomedicine Icahn School of Medicine at Mount Sinai , One Gustave L. Levy Place, Box 1677 New York, NY 10029, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacological Sciences, Institute for Systems Biomedicine Icahn School of Medicine at Mount Sinai , One Gustave L. Levy Place, Box 1677 New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074008129","display_name":"Rayees Rahman","orcid":"https://orcid.org/0000-0002-0248-0680"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rayees Rahman","raw_affiliation_strings":["Department of Pharmacological Sciences, Institute for Systems Biomedicine Icahn School of Medicine at Mount Sinai , One Gustave L. Levy Place, Box 1677 New York, NY 10029, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacological Sciences, Institute for Systems Biomedicine Icahn School of Medicine at Mount Sinai , One Gustave L. Levy Place, Box 1677 New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065778793","display_name":"Ravi Iyengar","orcid":"https://orcid.org/0000-0003-3789-8945"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ravi Iyengar","raw_affiliation_strings":["Department of Pharmacological Sciences, Institute for Systems Biomedicine Icahn School of Medicine at Mount Sinai , One Gustave L. Levy Place, Box 1677 New York, NY 10029, USA","Institute for Systems Biomedicine Icahn School of Medicine at Mount Sinai , One Gustave L. Levy Place, Box 1215 New York, NY 10029, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacological Sciences, Institute for Systems Biomedicine Icahn School of Medicine at Mount Sinai , One Gustave L. Levy Place, Box 1677 New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Institute for Systems Biomedicine Icahn School of Medicine at Mount Sinai , One Gustave L. Levy Place, Box 1215 New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048927341","display_name":"Avner Schlessinger","orcid":"https://orcid.org/0000-0003-4007-7814"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Avner Schlessinger","raw_affiliation_strings":["Department of Pharmacological Sciences, Institute for Systems Biomedicine Icahn School of Medicine at Mount Sinai , One Gustave L. Levy Place, Box 1677 New York, NY 10029, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacological Sciences, Institute for Systems Biomedicine Icahn School of Medicine at Mount Sinai , One Gustave L. Levy Place, Box 1677 New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5012745368","https://openalex.org/A5048927341","https://openalex.org/A5065778793"],"corresponding_institution_ids":["https://openalex.org/I98704320"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.2604,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.51896588,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":"2022","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6293439865112305},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.48935168981552124},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4831542372703552},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4761669337749481},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35074448585510254},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34031111001968384},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.308110773563385},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2472822070121765}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6293439865112305},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.48935168981552124},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4831542372703552},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4761669337749481},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35074448585510254},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34031111001968384},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.308110773563385},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2472822070121765}],"mesh":[{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baac053","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac053","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac053/45084040/baac053.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:35881481","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35881481","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9319604","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9319604","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baac053","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac053","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac053/45084040/baac053.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8199999928474426,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G3249785363","display_name":null,"funder_award_id":"U54 HG008098","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4288054457.pdf","grobid_xml":"https://content.openalex.org/works/W4288054457.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1952952018","https://openalex.org/W2018838463","https://openalex.org/W2039473152","https://openalex.org/W2055144429","https://openalex.org/W2057993196","https://openalex.org/W2078758159","https://openalex.org/W2101291993","https://openalex.org/W2130410032","https://openalex.org/W2144189989","https://openalex.org/W2161072217","https://openalex.org/W2162128823","https://openalex.org/W2187089797","https://openalex.org/W2774178591","https://openalex.org/W2931036699","https://openalex.org/W2953067954","https://openalex.org/W3022968840","https://openalex.org/W3082525510","https://openalex.org/W3087655841","https://openalex.org/W3136918052","https://openalex.org/W3151427897","https://openalex.org/W3157155436","https://openalex.org/W4234392219","https://openalex.org/W6640618756","https://openalex.org/W6776747571"],"related_works":["https://openalex.org/W2065457896","https://openalex.org/W3173234801","https://openalex.org/W2167984027","https://openalex.org/W3021302227","https://openalex.org/W10630519","https://openalex.org/W1919377569","https://openalex.org/W3144288563","https://openalex.org/W3123907821","https://openalex.org/W2382319620","https://openalex.org/W2164026370"],"abstract_inverted_index":{"Structural":[0],"features":[1,19,52],"of":[2,20,97],"proteins":[3],"provide":[4],"powerful":[5],"insights":[6],"into":[7],"biological":[8],"function":[9],"and":[10,22,34,49,62,77],"similarity.":[11],"Specifically,":[12],"previous":[13],"work":[14],"has":[15],"demonstrated":[16],"that":[17,56],"structural":[18,42,71,105,121],"tissue":[21,32,80],"drug-treated":[23],"cell":[24],"line":[25],"samples":[26],"can":[27,89,108],"be":[28,109],"used":[29],"to":[30,69],"predict":[31],"type":[33],"characterize":[35],"drug":[36],"relationships,":[37],"respectively.":[38],"We":[39,82],"have":[40],"developed":[41],"signatures,":[43],"a":[44,70],"web":[45],"server":[46,113,123],"for":[47,117],"annotating":[48],"analyzing":[50],"protein":[51],"from":[53,75],"gene":[54],"sets":[55],"are":[57],"often":[58],"found":[59],"in":[60],"transcriptomic":[61],"proteomic":[63],"data.":[64],"This":[65],"platform":[66],"provides":[67],"access":[68],"feature":[72,106],"database":[73,88],"derived":[74],"normal":[76],"disease":[78],"human":[79],"samples.":[81,102],"show":[83],"how":[84],"analysis":[85],"using":[86],"this":[87],"shed":[90],"light":[91],"on":[92,111],"the":[93,112],"relationship":[94],"between":[95],"states":[96],"single-cell":[98],"RNA-sequencing":[99],"lung":[100],"cancer":[101],"These":[103],"various":[104],"signatures":[107,122],"visualized":[110],"itself":[114],"or":[115],"downloaded":[116],"additional":[118],"analysis.":[119],"The":[120],"tool":[124],"is":[125],"freely":[126],"available":[127],"at":[128],"https://structural-server.kinametrix.com/.":[129]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2}],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-10T00:00:00"}
