{"id":"https://openalex.org/W4282916445","doi":"https://doi.org/10.1093/database/baac039","title":"New reasons for biologists to write with a formal language","display_name":"New reasons for biologists to write with a formal language","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4282916445","doi":"https://doi.org/10.1093/database/baac039","pmid":"https://pubmed.ncbi.nlm.nih.gov/35657112"},"language":"en","primary_location":{"id":"doi:10.1093/database/baac039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac039/43944502/baac039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac039/43944502/baac039.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002036038","display_name":"Raul Rodriguez\u2010Esteban","orcid":"https://orcid.org/0000-0002-9494-9609"},"institutions":[{"id":"https://openalex.org/I118019719","display_name":"Roche (Switzerland)","ror":"https://ror.org/00by1q217","country_code":"CH","type":"company","lineage":["https://openalex.org/I118019719"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Raul Rodriguez-Esteban","raw_affiliation_strings":["Roche Pharmaceutical Research and Early Development, Roche Innovation Center Basel, Grenzacherstrasse 124 , Basel 4070, Switzerland"],"affiliations":[{"raw_affiliation_string":"Roche Pharmaceutical Research and Early Development, Roche Innovation Center Basel, Grenzacherstrasse 124 , Basel 4070, Switzerland","institution_ids":["https://openalex.org/I118019719"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5002036038"],"corresponding_institution_ids":["https://openalex.org/I118019719"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05332913,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2022","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7461861371994019},{"id":"https://openalex.org/keywords/narrative","display_name":"Narrative","score":0.6182000637054443},{"id":"https://openalex.org/keywords/compiler","display_name":"Compiler","score":0.5627564191818237},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5237833857536316},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4138743281364441},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.34785377979278564},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34405744075775146},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.29626062512397766},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18855366110801697},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.17475509643554688},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0915900468826294},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.07493573427200317}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7461861371994019},{"id":"https://openalex.org/C199033989","wikidata":"https://www.wikidata.org/wiki/Q1318295","display_name":"Narrative","level":2,"score":0.6182000637054443},{"id":"https://openalex.org/C169590947","wikidata":"https://www.wikidata.org/wiki/Q47506","display_name":"Compiler","level":2,"score":0.5627564191818237},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5237833857536316},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4138743281364441},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.34785377979278564},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34405744075775146},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.29626062512397766},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18855366110801697},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.17475509643554688},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0915900468826294},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.07493573427200317},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baac039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac039/43944502/baac039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:35657112","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35657112","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9216469","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9216469","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baac039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac039/43944502/baac039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.8700000047683716}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309432","display_name":"F. Hoffmann-La Roche","ror":"https://ror.org/00by1q217"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4282916445.pdf","grobid_xml":"https://content.openalex.org/works/W4282916445.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W1523537564","https://openalex.org/W1583825190","https://openalex.org/W1883110779","https://openalex.org/W1907286193","https://openalex.org/W1969709265","https://openalex.org/W2013724586","https://openalex.org/W2031868269","https://openalex.org/W2047095091","https://openalex.org/W2060871034","https://openalex.org/W2069026503","https://openalex.org/W2069157810","https://openalex.org/W2069162648","https://openalex.org/W2085809930","https://openalex.org/W2096951189","https://openalex.org/W2104842437","https://openalex.org/W2127704515","https://openalex.org/W2130055902","https://openalex.org/W2145870108","https://openalex.org/W2148130205","https://openalex.org/W2149803936","https://openalex.org/W2155947054","https://openalex.org/W2157870551","https://openalex.org/W2171895522","https://openalex.org/W2215240956","https://openalex.org/W2300677196","https://openalex.org/W2355033197","https://openalex.org/W2492990009","https://openalex.org/W2510215536","https://openalex.org/W2517963161","https://openalex.org/W2566288590","https://openalex.org/W2734589557","https://openalex.org/W2762459254","https://openalex.org/W2766208765","https://openalex.org/W2804361106","https://openalex.org/W2886832047","https://openalex.org/W2950796078","https://openalex.org/W2952755768","https://openalex.org/W2952894920","https://openalex.org/W3010356924","https://openalex.org/W3025152092","https://openalex.org/W3032827804","https://openalex.org/W3037979089","https://openalex.org/W3111296862","https://openalex.org/W3115527712","https://openalex.org/W3118307481","https://openalex.org/W3119641321","https://openalex.org/W3127484277","https://openalex.org/W3166593409","https://openalex.org/W3173673636","https://openalex.org/W3176793246","https://openalex.org/W3180536457","https://openalex.org/W3182414949","https://openalex.org/W4206197449","https://openalex.org/W6679509637","https://openalex.org/W6751990736","https://openalex.org/W6753925316","https://openalex.org/W6774977730","https://openalex.org/W6784196223","https://openalex.org/W6790522987","https://openalex.org/W6793844237","https://openalex.org/W6798398338"],"related_works":["https://openalex.org/W3096456556","https://openalex.org/W4240253816","https://openalex.org/W2169584677","https://openalex.org/W2979513934","https://openalex.org/W4232954277","https://openalex.org/W2020341030","https://openalex.org/W2348886128","https://openalex.org/W2749133591","https://openalex.org/W2388067091","https://openalex.org/W2367656648"],"abstract_inverted_index":{"Current":[0],"biological":[1,23,34,54,77],"writing":[2,55,78],"is":[3],"afflicted":[4],"by":[5,56],"the":[6,51,70],"use":[7],"of":[8,53,73],"ambiguous":[9],"names,":[10],"convoluted":[11],"sentences,":[12],"vague":[13],"statements":[14],"and":[15,27,37,59,65,86],"narrative-fitted":[16],"storylines.":[17],"This":[18],"represents":[19],"a":[20],"challenge":[21],"for":[22,30],"research":[24],"in":[25,28,76],"general":[26],"particular":[29],"fields":[31],"such":[32],"as":[33],"database":[35],"curation":[36],"text":[38],"mining,":[39],"which":[40],"have":[41],"been":[42],"tasked":[43],"to":[44,83],"cope":[45],"with":[46],"exponentially":[47],"growing":[48],"content.":[49],"Improving":[50],"quality":[52],"encouraging":[57],"unambiguity":[58],"precision":[60],"would":[61,79],"foster":[62],"expository":[63],"discipline":[64],"machine":[66],"reasoning.":[67],"More":[68],"specifically,":[69],"routine":[71],"inclusion":[72],"formal":[74],"languages":[75],"improve":[80],"our":[81],"ability":[82],"describe,":[84],"compile":[85],"model":[87],"biology.":[88]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}