{"id":"https://openalex.org/W4225556030","doi":"https://doi.org/10.1093/database/baac032","title":"<tt>met v1</tt> : expanding on old estimations of biodiversity from eDNA with a new database framework","display_name":"<tt>met v1</tt> : expanding on old estimations of biodiversity from eDNA with a new database framework","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4225556030","doi":"https://doi.org/10.1093/database/baac032","pmid":"https://pubmed.ncbi.nlm.nih.gov/35543254"},"language":"en","primary_location":{"id":"doi:10.1093/database/baac032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac032","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baac032","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061684236","display_name":"David Molik","orcid":"https://orcid.org/0000-0003-3192-6538"},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David C Molik","raw_affiliation_strings":["Department of Biological Sciences, Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556, USA","Navari Family Center for Digital Scholarship, Hesburgh Library, University of Notre Dame, Notre Dame, IN 46556, USA"],"raw_orcid":"https://orcid.org/0000-0003-3192-6538","affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556, USA","institution_ids":["https://openalex.org/I107639228"]},{"raw_affiliation_string":"Navari Family Center for Digital Scholarship, Hesburgh Library, University of Notre Dame, Notre Dame, IN 46556, USA","institution_ids":["https://openalex.org/I107639228"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5061684236"],"corresponding_institution_ids":["https://openalex.org/I107639228"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04088249,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2022","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7690964937210083},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.6758124232292175},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6498392820358276},{"id":"https://openalex.org/keywords/variance","display_name":"Variance (accounting)","score":0.6216900944709778},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5069344639778137},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4391539394855499},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35670748353004456},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34544461965560913}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7690964937210083},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.6758124232292175},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6498392820358276},{"id":"https://openalex.org/C196083921","wikidata":"https://www.wikidata.org/wiki/Q7915758","display_name":"Variance (accounting)","level":2,"score":0.6216900944709778},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5069344639778137},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4391539394855499},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35670748353004456},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34544461965560913},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C121955636","wikidata":"https://www.wikidata.org/wiki/Q4116214","display_name":"Accounting","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000080309","descriptor_name":"DNA, Environmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000080309","descriptor_name":"DNA, Environmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000080309","descriptor_name":"DNA, Environmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004784","descriptor_name":"Environmental Monitoring","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004784","descriptor_name":"Environmental Monitoring","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004784","descriptor_name":"Environmental Monitoring","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baac032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac032","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:35543254","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35543254","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9216496","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9216496","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baac032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac032","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.4099999964237213,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G7840632316","display_name":null,"funder_award_id":"CPQ 214706","funder_id":"https://openalex.org/F4320310260","funder_display_name":"University of Notre Dame"}],"funders":[{"id":"https://openalex.org/F4320310260","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W2041391522","https://openalex.org/W2074735241","https://openalex.org/W2093830129","https://openalex.org/W2095685450","https://openalex.org/W2106399600","https://openalex.org/W2110732100","https://openalex.org/W2118144900","https://openalex.org/W2129687578","https://openalex.org/W2131186249","https://openalex.org/W2152383265","https://openalex.org/W2533248932","https://openalex.org/W2696702828","https://openalex.org/W2754769271","https://openalex.org/W2766358903","https://openalex.org/W2803272388","https://openalex.org/W2937376009","https://openalex.org/W3010654996","https://openalex.org/W3215333900","https://openalex.org/W4214671568","https://openalex.org/W6728628127"],"related_works":["https://openalex.org/W4241523039","https://openalex.org/W2360028903","https://openalex.org/W4280543773","https://openalex.org/W178231042","https://openalex.org/W2366083136","https://openalex.org/W2387622493","https://openalex.org/W1932132538","https://openalex.org/W2357832196","https://openalex.org/W1566252468","https://openalex.org/W4200375594"],"abstract_inverted_index":{"A":[0],"long-standing":[1],"problem":[2],"in":[3,42,97],"environmental":[4,31],"DNA":[5,32],"has":[6],"been":[7],"the":[8,49,93,110],"inability":[9],"to":[10,77],"compute":[11],"across":[12],"large":[13,28,72,85],"number":[14,29],"of":[15,30,51,74,82,95,112],"datasets.":[16,61],"Here":[17],"we":[18],"introduce":[19],"an":[20,43,53],"open-source":[21],"software":[22,67,101],"framework":[23,102],"that":[24,107],"can":[25],"store":[26],"a":[27,38,65],"datasets,":[33,99],"as":[34,36],"well":[35],"provide":[37],"platform":[39],"for":[40],"analysis,":[41],"easily":[44],"customizable":[45],"way.":[46],"We":[47],"show":[48],"utility":[50],"such":[52],"approach":[54],"by":[55],"analyzing":[56],"over":[57],"1400":[58],"arthropod":[59],"metabarcode":[60,75,98],"This":[62],"article":[63],"introduces":[64],"new":[66],"framework,":[68],"met,":[69],"which":[70],"utilizes":[71],"numbers":[73],"datasets":[76],"draw":[78],"conclusions":[79],"about":[80],"patterns":[81],"diversity":[83],"at":[84],"spatial":[86],"scales.":[87],"Given":[88],"more":[89],"accurate":[90],"estimations":[91],"on":[92],"distribution":[94],"variance":[96],"this":[100],"could":[103],"facilitate":[104],"novel":[105],"analyses":[106],"are":[108],"outside":[109],"scope":[111],"currently":[113],"available":[114],"similar":[115],"platforms.":[116],"Database":[117],"URL":[118],"https://osf.io/spb8v/.":[119]},"counts_by_year":[],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2022-05-05T00:00:00"}
