{"id":"https://openalex.org/W4225985612","doi":"https://doi.org/10.1093/database/baac029","title":"TMC-SNPdb 2.0: an ethnic-specific database of Indian germline variants","display_name":"TMC-SNPdb 2.0: an ethnic-specific database of Indian germline variants","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4225985612","doi":"https://doi.org/10.1093/database/baac029","pmid":"https://pubmed.ncbi.nlm.nih.gov/35551364"},"language":"en","primary_location":{"id":"doi:10.1093/database/baac029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac029","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac029/43679114/baac029.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac029/43679114/baac029.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030864351","display_name":"Sanket Desai","orcid":"https://orcid.org/0000-0002-7929-8684"},"institutions":[{"id":"https://openalex.org/I200207707","display_name":"Homi Bhabha National Institute","ror":"https://ror.org/02bv3zr67","country_code":"IN","type":"education","lineage":["https://openalex.org/I200207707"]},{"id":"https://openalex.org/I4210157422","display_name":"Advanced Centre for Treatment, Research and Education in Cancer","ror":"https://ror.org/05b9pgt88","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800098698","https://openalex.org/I4210157422"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sanket Desai","raw_affiliation_strings":["Homi Bhabha National Institute , Training School Complex , Anushakti Nagar , Mumbai , Maharashtra 400094 , India","Integrated Cancer Genomics Laboratory , Advanced Centre for Treatment, Research, and Education in Cancer , Kharghar , Navi Mumbai , Maharashtra 410210 , India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Homi Bhabha National Institute , Training School Complex , Anushakti Nagar , Mumbai , Maharashtra 400094 , India","institution_ids":["https://openalex.org/I200207707"]},{"raw_affiliation_string":"Integrated Cancer Genomics Laboratory , Advanced Centre for Treatment, Research, and Education in Cancer , Kharghar , Navi Mumbai , Maharashtra 410210 , India","institution_ids":["https://openalex.org/I4210157422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082085032","display_name":"Rohit Mishra","orcid":"https://orcid.org/0000-0002-1786-8872"},"institutions":[{"id":"https://openalex.org/I4210157422","display_name":"Advanced Centre for Treatment, Research and Education in Cancer","ror":"https://ror.org/05b9pgt88","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800098698","https://openalex.org/I4210157422"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Rohit Mishra","raw_affiliation_strings":["Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Kharghar, Navi Mumbai, Maharashtra 410210, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Kharghar, Navi Mumbai, Maharashtra 410210, India","institution_ids":["https://openalex.org/I4210157422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101693281","display_name":"Suhail Ahmad","orcid":"https://orcid.org/0000-0001-6999-0805"},"institutions":[{"id":"https://openalex.org/I200207707","display_name":"Homi Bhabha National Institute","ror":"https://ror.org/02bv3zr67","country_code":"IN","type":"education","lineage":["https://openalex.org/I200207707"]},{"id":"https://openalex.org/I4210157422","display_name":"Advanced Centre for Treatment, Research and Education in Cancer","ror":"https://ror.org/05b9pgt88","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800098698","https://openalex.org/I4210157422"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Suhail Ahmad","raw_affiliation_strings":["Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra 400094, India","Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Kharghar, Navi Mumbai, Maharashtra 410210, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra 400094, India","institution_ids":["https://openalex.org/I200207707"]},{"raw_affiliation_string":"Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Kharghar, Navi Mumbai, Maharashtra 410210, India","institution_ids":["https://openalex.org/I4210157422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013625907","display_name":"Supriya Hait","orcid":"https://orcid.org/0000-0002-3786-9960"},"institutions":[{"id":"https://openalex.org/I200207707","display_name":"Homi Bhabha National Institute","ror":"https://ror.org/02bv3zr67","country_code":"IN","type":"education","lineage":["https://openalex.org/I200207707"]},{"id":"https://openalex.org/I4210157422","display_name":"Advanced Centre for Treatment, Research and Education in Cancer","ror":"https://ror.org/05b9pgt88","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800098698","https://openalex.org/I4210157422"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Supriya Hait","raw_affiliation_strings":["Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra 400094, India","Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Kharghar, Navi Mumbai, Maharashtra 410210, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra 400094, India","institution_ids":["https://openalex.org/I200207707"]},{"raw_affiliation_string":"Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Kharghar, Navi Mumbai, Maharashtra 410210, India","institution_ids":["https://openalex.org/I4210157422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109380966","display_name":"Asim Joshi","orcid":null},"institutions":[{"id":"https://openalex.org/I200207707","display_name":"Homi Bhabha National Institute","ror":"https://ror.org/02bv3zr67","country_code":"IN","type":"education","lineage":["https://openalex.org/I200207707"]},{"id":"https://openalex.org/I4210157422","display_name":"Advanced Centre for Treatment, Research and Education in Cancer","ror":"https://ror.org/05b9pgt88","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800098698","https://openalex.org/I4210157422"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Asim Joshi","raw_affiliation_strings":["Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra 400094, India","Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Kharghar, Navi Mumbai, Maharashtra 410210, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra 400094, India","institution_ids":["https://openalex.org/I200207707"]},{"raw_affiliation_string":"Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Kharghar, Navi Mumbai, Maharashtra 410210, India","institution_ids":["https://openalex.org/I4210157422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086783488","display_name":"Amit Dutt","orcid":"https://orcid.org/0000-0002-1119-4774"},"institutions":[{"id":"https://openalex.org/I200207707","display_name":"Homi Bhabha National Institute","ror":"https://ror.org/02bv3zr67","country_code":"IN","type":"education","lineage":["https://openalex.org/I200207707"]},{"id":"https://openalex.org/I4210157422","display_name":"Advanced Centre for Treatment, Research and Education in Cancer","ror":"https://ror.org/05b9pgt88","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800098698","https://openalex.org/I4210157422"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Amit Dutt","raw_affiliation_strings":["Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra 400094, India","Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Kharghar, Navi Mumbai, Maharashtra 410210, India"],"raw_orcid":"https://orcid.org/0000-0002-1119-4774","affiliations":[{"raw_affiliation_string":"Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra 400094, India","institution_ids":["https://openalex.org/I200207707"]},{"raw_affiliation_string":"Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Kharghar, Navi Mumbai, Maharashtra 410210, India","institution_ids":["https://openalex.org/I4210157422"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5086783488"],"corresponding_institution_ids":["https://openalex.org/I200207707","https://openalex.org/I4210157422"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.1692,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.55701506,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"2022","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11369","display_name":"Genetic factors in colorectal cancer","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/germline","display_name":"Germline","score":0.81935054063797},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6388264894485474},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6026957035064697},{"id":"https://openalex.org/keywords/missense-mutation","display_name":"Missense mutation","score":0.5586369037628174},{"id":"https://openalex.org/keywords/germline-mutation","display_name":"Germline mutation","score":0.5343446135520935},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.5211160778999329},{"id":"https://openalex.org/keywords/1000-genomes-project","display_name":"1000 Genomes Project","score":0.5160724520683289},{"id":"https://openalex.org/keywords/exome","display_name":"Exome","score":0.5068562626838684},{"id":"https://openalex.org/keywords/somatic-cell","display_name":"Somatic cell","score":0.48702770471572876},{"id":"https://openalex.org/keywords/coding-region","display_name":"Coding region","score":0.4816371500492096},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.46186619997024536},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.3313804268836975},{"id":"https://openalex.org/keywords/exome-sequencing","display_name":"Exome sequencing","score":0.2851567268371582},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.26300686597824097},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.24345144629478455},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.14600211381912231}],"concepts":[{"id":"https://openalex.org/C109825262","wikidata":"https://www.wikidata.org/wiki/Q1139164","display_name":"Germline","level":3,"score":0.81935054063797},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6388264894485474},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6026957035064697},{"id":"https://openalex.org/C75563809","wikidata":"https://www.wikidata.org/wiki/Q2656896","display_name":"Missense mutation","level":4,"score":0.5586369037628174},{"id":"https://openalex.org/C13514818","wikidata":"https://www.wikidata.org/wiki/Q5552256","display_name":"Germline mutation","level":4,"score":0.5343446135520935},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.5211160778999329},{"id":"https://openalex.org/C97425143","wikidata":"https://www.wikidata.org/wiki/Q164786","display_name":"1000 Genomes Project","level":5,"score":0.5160724520683289},{"id":"https://openalex.org/C10590036","wikidata":"https://www.wikidata.org/wiki/Q417664","display_name":"Exome","level":5,"score":0.5068562626838684},{"id":"https://openalex.org/C134305767","wikidata":"https://www.wikidata.org/wiki/Q725508","display_name":"Somatic cell","level":3,"score":0.48702770471572876},{"id":"https://openalex.org/C91779695","wikidata":"https://www.wikidata.org/wiki/Q3780824","display_name":"Coding region","level":3,"score":0.4816371500492096},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.46186619997024536},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.3313804268836975},{"id":"https://openalex.org/C16671776","wikidata":"https://www.wikidata.org/wiki/Q5420592","display_name":"Exome sequencing","level":4,"score":0.2851567268371582},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.26300686597824097},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.24345144629478455},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.14600211381912231}],"mesh":[{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044466","descriptor_name":"Asian People","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044466","descriptor_name":"Asian People","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044466","descriptor_name":"Asian People","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baac029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac029","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac029/43679114/baac029.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9216475","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9216475","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmid:35551364","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35551364","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/database/baac029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac029","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac029/43679114/baac029.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G6206448607","display_name":null,"funder_award_id":"BT/MED/30/VNCI-Hr-BRCA/2015","funder_id":"https://openalex.org/F4320320717","funder_display_name":"Department of Biotechnology, Ministry of Science and Technology, India"}],"funders":[{"id":"https://openalex.org/F4320320717","display_name":"Department of Biotechnology, Ministry of Science and Technology, India","ror":"https://ror.org/03tjsyq23"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4225985612.pdf","grobid_xml":"https://content.openalex.org/works/W4225985612.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1175815497","https://openalex.org/W1563940013","https://openalex.org/W1919257374","https://openalex.org/W2015759847","https://openalex.org/W2051317473","https://openalex.org/W2104549677","https://openalex.org/W2111808908","https://openalex.org/W2119180969","https://openalex.org/W2122732537","https://openalex.org/W2137886330","https://openalex.org/W2142386149","https://openalex.org/W2256016639","https://openalex.org/W2417483443","https://openalex.org/W2466654534","https://openalex.org/W2489911374","https://openalex.org/W2531587846","https://openalex.org/W2606495925","https://openalex.org/W2898789672","https://openalex.org/W3008726958","https://openalex.org/W3029661147","https://openalex.org/W3093528466","https://openalex.org/W3094333956","https://openalex.org/W3111061871","https://openalex.org/W3131055609","https://openalex.org/W3211664027","https://openalex.org/W4394666350","https://openalex.org/W6633589378","https://openalex.org/W6674561012","https://openalex.org/W6784421958"],"related_works":["https://openalex.org/W2067324420","https://openalex.org/W2613868166","https://openalex.org/W4247239363","https://openalex.org/W4296060409","https://openalex.org/W4221137512","https://openalex.org/W2009580730","https://openalex.org/W3216631139","https://openalex.org/W2041452721","https://openalex.org/W3117759755","https://openalex.org/W3208984277"],"abstract_inverted_index":{"Cancer":[0],"is":[1,258,286],"a":[2,101,201],"somatic":[3,20,89,105,254],"disease.":[4],"The":[5,175,281],"lack":[6],"of":[7,54,134,191,219,239,265],"Indian-specific":[8],"reference":[9,263],"germline":[10,69,128,266],"variation":[11],"resources":[12],"limits":[13],"the":[14,31,35,60,77,110,138,152,160,165,172,188,237,240,246,252,259,291],"ability":[15],"to":[16,75,99,109,177,183,273],"identify":[17],"true":[18],"cancer-associated":[19],"variants":[21,62,112,122,157,169,221,243,267],"among":[22],"Indian":[23,55,135,139,271],"cancer":[24,73,132,275],"patients.":[25],"We":[26,214],"integrate":[27],"two":[28],"recent":[29],"studies,":[30],"GenomeAsia":[32,114],"100K":[33,115],"and":[34,50,116,193,211,225,277,283],"Genomics":[36],"for":[37,232,288],"Public":[38],"Health":[39],"in":[40,103,151,245,250],"India":[41],"(IndiGen)":[42],"program,":[43],"describing":[44],"genome":[45],"sequence":[46,203],"variations":[47],"across":[48,269],"598":[49],"1029":[51],"healthy":[52],"individuals":[53,272],"origin,":[56],"respectively,":[57],"along":[58],"with":[59,155,187],"unique":[61,121,146,242],"generated":[63,123],"from":[64,72,113,124,131,204],"our":[65],"in-house":[66,96,126,206],"173":[67,125],"normal":[68,127],"samples":[70,98,129,208],"derived":[71,130],"patients":[74,133],"generate":[76],"Tata":[78],"Memorial":[79],"Centre-SNP":[80],"database":[81,264,282],"(TMC-SNPdb)":[82],"2.0.":[83,142],"To":[84],"show":[85,215],"its":[86],"utility,":[87],"GATK/Mutect2-based":[88],"variant":[90,248],"calling":[91],"was":[92,181],"performed":[93],"on":[94],"224":[95,205],"tumor":[97,207,224],"demonstrate":[100],"reduction":[102],"false-positive":[104,253],"variants.":[106],"In":[107],"addition":[108],"ethnic-specific":[111,247],"IndiGenomes":[117],"databases,":[118],"305":[119,144],"132":[120,145],"origin":[136],"constitute":[137],"specific,":[140],"TMC-SNPdb":[141,192,256],"Of":[143],"variants,":[147],"11.13%":[148],"were":[149,171],"found":[150,244],"coding":[153],"region":[154],"missense":[156],"(31.3%)":[158],"as":[159],"most":[161,260],"predominant":[162],"category.":[163],"Among":[164],"non-coding":[166],"variations,":[167],"intronic":[168],"(49%)":[170],"highest":[173],"contributors.":[174],"non-synonymous":[176],"synonymous":[178],"SNP":[179],"ratio":[180],"observed":[182],"be":[184],"1.9,":[185],"consistent":[186],"previous":[189],"version":[190],"literature.":[194],"Using":[195],"TMC":[196],"SNPdb":[197],"2.0,":[198],"we":[199],"analyzed":[200],"whole-exome":[202],"(180":[209],"paired":[210,223],"44":[212],"orphans).":[213],"an":[216],"average":[217],"depletion":[218,228],"3.44%":[220],"per":[222],"significantly":[226],"higher":[227],"(P-value":[229],"<":[230],"0.001)":[231],"orphan":[233],"tumors":[234],"(4.21%),":[235],"demonstrating":[236],"utility":[238],"rare,":[241],"datasets":[249],"reducing":[251],"mutations.":[255],"2.0":[257],"exhaustive":[261],"open-source":[262],"occurring":[268],"1800":[270],"analyze":[274],"genomes":[276],"other":[278],"genetic":[279],"disorders.":[280],"toolkit":[284],"package":[285],"available":[287],"download":[289],"at":[290],"following:":[292],"Database":[293],"URL":[294],"http://www.actrec.gov.in/pi-webpages/AmitDutt/TMCSNPdb2/TMCSNPdb2.html.":[295]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
