{"id":"https://openalex.org/W4210866876","doi":"https://doi.org/10.1093/database/baac008","title":"PlasticDB: a database of microorganisms and proteins linked to plastic biodegradation","display_name":"PlasticDB: a database of microorganisms and proteins linked to plastic biodegradation","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4210866876","doi":"https://doi.org/10.1093/database/baac008","pmid":"https://pubmed.ncbi.nlm.nih.gov/35266524"},"language":"en","primary_location":{"id":"doi:10.1093/database/baac008","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac008","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac008/42794560/baac008.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac008/42794560/baac008.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033703108","display_name":"Victor Gambarini","orcid":"https://orcid.org/0000-0002-5639-6820"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":true,"raw_author_name":"Victor Gambarini","raw_affiliation_strings":["School of Biological Sciences, University of Auckland, 3a Symonds Street, Auckland 1010, New Zealand"],"raw_orcid":"https://orcid.org/0000-0002-5639-6820","affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Auckland, 3a Symonds Street, Auckland 1010, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041174407","display_name":"Olga Pantos","orcid":"https://orcid.org/0000-0001-5454-9056"},"institutions":[{"id":"https://openalex.org/I4210132331","display_name":"New Zealand Institute for Public Health and Forensic Science","ror":"https://ror.org/0405trq15","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I4210132331"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Olga Pantos","raw_affiliation_strings":["The Institute of Environmental Science and Research, 27 Creyke Road, Ilam, Christchurch 8041, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute of Environmental Science and Research, 27 Creyke Road, Ilam, Christchurch 8041, New Zealand","institution_ids":["https://openalex.org/I4210132331"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058817821","display_name":"Joanne M. Kingsbury","orcid":"https://orcid.org/0000-0002-5939-7255"},"institutions":[{"id":"https://openalex.org/I4210132331","display_name":"New Zealand Institute for Public Health and Forensic Science","ror":"https://ror.org/0405trq15","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I4210132331"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Joanne M Kingsbury","raw_affiliation_strings":["The Institute of Environmental Science and Research, 27 Creyke Road, Ilam, Christchurch 8041, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute of Environmental Science and Research, 27 Creyke Road, Ilam, Christchurch 8041, New Zealand","institution_ids":["https://openalex.org/I4210132331"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014790534","display_name":"Louise Weaver","orcid":"https://orcid.org/0000-0002-3750-868X"},"institutions":[{"id":"https://openalex.org/I4210132331","display_name":"New Zealand Institute for Public Health and Forensic Science","ror":"https://ror.org/0405trq15","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I4210132331"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Louise Weaver","raw_affiliation_strings":["The Institute of Environmental Science and Research, 27 Creyke Road, Ilam, Christchurch 8041, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute of Environmental Science and Research, 27 Creyke Road, Ilam, Christchurch 8041, New Zealand","institution_ids":["https://openalex.org/I4210132331"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040064077","display_name":"Kim M. Handley","orcid":"https://orcid.org/0000-0003-0531-3009"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Kim M Handley","raw_affiliation_strings":["School of Biological Sciences, University of Auckland, 3a Symonds Street, Auckland 1010, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Auckland, 3a Symonds Street, Auckland 1010, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062336642","display_name":"Gavin Lear","orcid":"https://orcid.org/0000-0001-5083-4773"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Gavin Lear","raw_affiliation_strings":["School of Biological Sciences, University of Auckland, 3a Symonds Street, Auckland 1010, New Zealand"],"raw_orcid":"https://orcid.org/0000-0001-5083-4773","affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Auckland, 3a Symonds Street, Auckland 1010, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5033703108"],"corresponding_institution_ids":["https://openalex.org/I154130895"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":10.7978,"has_fulltext":true,"cited_by_count":247,"citation_normalized_percentile":{"value":0.99403674,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"2022","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10753","display_name":"Microplastics and Plastic Pollution","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10753","display_name":"Microplastics and Plastic Pollution","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10661","display_name":"biodegradable polymer synthesis and properties","score":0.9168999791145325,"subfield":{"id":"https://openalex.org/subfields/2502","display_name":"Biomaterials"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7102402448654175},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.6074621677398682},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5281710028648376},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.4816247820854187},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44730043411254883},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3144034147262573},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.29984188079833984},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1775670349597931},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09913551807403564}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7102402448654175},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.6074621677398682},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5281710028648376},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.4816247820854187},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44730043411254883},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3144034147262573},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.29984188079833984},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1775670349597931},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09913551807403564}],"mesh":[{"descriptor_ui":"D001673","descriptor_name":"Biodegradation, Environmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001673","descriptor_name":"Biodegradation, Environmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001673","descriptor_name":"Biodegradation, Environmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010969","descriptor_name":"Plastics","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010969","descriptor_name":"Plastics","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010969","descriptor_name":"Plastics","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baac008","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac008","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac008/42794560/baac008.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:35266524","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35266524","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:figshare.com:article/22218802","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/PlasticDB_a_database_of_microorganisms_and_proteins_linked_to_plastic_biodegradation/22218802","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:9216477","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9216477","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:researchspace.auckland.ac.nz:2292/59207","is_oa":true,"landing_page_url":"https://hdl.handle.net/2292/59207","pdf_url":null,"source":{"id":"https://openalex.org/S7407055463","display_name":"ResearchSpace (University of Auckland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I154130895","host_organization_name":"University of Auckland","host_organization_lineage":["https://openalex.org/I154130895"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"doi:10.26091/esrnz.22218802.v1","is_oa":true,"landing_page_url":"https://doi.org/10.26091/esrnz.22218802.v1","pdf_url":null,"source":{"id":"https://openalex.org/S7407051206","display_name":"ESR Data and information Repository","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/database/baac008","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baac008","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baac008/42794560/baac008.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.49000000953674316,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G4429725236","display_name":null,"funder_award_id":"C03X1802","funder_id":"https://openalex.org/F4320321983","funder_display_name":"Ministry of Business, Innovation and Employment"}],"funders":[{"id":"https://openalex.org/F4320309029","display_name":"George Mason University","ror":"https://ror.org/02jqj7156"},{"id":"https://openalex.org/F4320321983","display_name":"Ministry of Business, Innovation and Employment","ror":"https://ror.org/02jtq1b51"},{"id":"https://openalex.org/F4320337327","display_name":"George Mason Centre for the Natural Environment, University of Auckland","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4210866876.pdf","grobid_xml":"https://content.openalex.org/works/W4210866876.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1586971739","https://openalex.org/W1902168557","https://openalex.org/W1998003033","https://openalex.org/W1999758530","https://openalex.org/W2014205189","https://openalex.org/W2019997960","https://openalex.org/W2025333510","https://openalex.org/W2027297590","https://openalex.org/W2032321396","https://openalex.org/W2061916820","https://openalex.org/W2108245596","https://openalex.org/W2142678031","https://openalex.org/W2146679743","https://openalex.org/W2159057465","https://openalex.org/W2163451334","https://openalex.org/W2167163374","https://openalex.org/W2185838280","https://openalex.org/W2277953252","https://openalex.org/W2294707565","https://openalex.org/W2396109471","https://openalex.org/W2401404581","https://openalex.org/W2600922952","https://openalex.org/W2606037039","https://openalex.org/W2616996458","https://openalex.org/W2737217596","https://openalex.org/W2912990441","https://openalex.org/W2914665624","https://openalex.org/W2920510521","https://openalex.org/W2942442809","https://openalex.org/W2945504065","https://openalex.org/W2949683836","https://openalex.org/W2955133522","https://openalex.org/W2963276645","https://openalex.org/W2974748521","https://openalex.org/W2986569804","https://openalex.org/W3030925007","https://openalex.org/W3110528245","https://openalex.org/W3121810972","https://openalex.org/W3136080789","https://openalex.org/W3143063265","https://openalex.org/W3158581661","https://openalex.org/W3177828909","https://openalex.org/W3217537867","https://openalex.org/W4243403025","https://openalex.org/W6681612195","https://openalex.org/W6686573998","https://openalex.org/W6736561523","https://openalex.org/W6804523251"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2117258802","https://openalex.org/W4234157524"],"abstract_inverted_index":{"The":[0],"number":[1],"of":[2,16,22,42,63,147],"publications":[3],"reporting":[4],"putative":[5,148],"plastic-degrading":[6,149,153],"microbes":[7],"and":[8,19,44,66,97,116,134,151,155],"proteins":[9,45,154],"is":[10],"continuously":[11],"increasing,":[12],"necessitating":[13],"the":[14,20,30,54,60,75,81,145],"compilation":[15],"these":[17],"data":[18],"development":[21],"tools":[23,124],"to":[24,34,47,57,80,87,108],"facilitate":[25],"their":[26,142],"analysis.":[27],"We":[28],"developed":[29],"PlasticDB":[31],"web":[32],"application":[33],"address":[35],"this":[36],"need,":[37],"which":[38],"comprises":[39],"a":[40],"database":[41,76,110,118],"microorganisms":[43],"reported":[46,86],"biodegrade":[48],"plastics.":[49],"Associated":[50],"metadata,":[51],"such":[52,112],"as":[53,113],"techniques":[55],"utilized":[56],"assess":[58],"biodegradation,":[59],"environmental":[61],"source":[62],"microbial":[64],"isolate":[65],"presumed":[67],"thermophilic":[68],"traits":[69],"are":[70,77,85],"also":[71],"reported.":[72],"Proteins":[73],"in":[74,95],"categorized":[78],"according":[79],"plastic":[82],"type":[83],"they":[84],"degrade.":[88],"Each":[89],"protein":[90],"structure":[91],"has":[92],"been":[93],"predicted":[94],"silico":[96],"can":[98,139],"be":[99],"visualized":[100],"or":[101],"downloaded":[102],"for":[103,144],"further":[104],"investigation.":[105],"In":[106],"addition":[107],"standard":[109],"functionalities,":[111],"searching,":[114],"filtering":[115],"retrieving":[117],"records,":[119],"we":[120],"implemented":[121],"several":[122],"analytical":[123],"that":[125],"accept":[126],"inputs,":[127],"including":[128],"gene,":[129],"genome,":[130],"metagenome,":[131],"transcriptomes,":[132],"metatranscriptomes":[133],"taxa":[135],"table":[136],"data.":[137],"Users":[138],"now":[140],"analyze":[141],"datasets":[143],"presence":[146],"species":[150],"potential":[152],"pathways":[156],"from":[157],"those":[158],"species.":[159],"Database":[160],"URL:http://plasticdb.org.":[161]},"counts_by_year":[{"year":2026,"cited_by_count":42},{"year":2025,"cited_by_count":87},{"year":2024,"cited_by_count":67},{"year":2023,"cited_by_count":40},{"year":2022,"cited_by_count":11}],"updated_date":"2026-06-05T09:01:59.212387","created_date":"2025-10-10T00:00:00"}
