{"id":"https://openalex.org/W3214017971","doi":"https://doi.org/10.1093/database/baab074","title":"At-C-RNA database, a one-stop source for information on circRNAs in<i>Arabidopsis thaliana</i>in a unified format","display_name":"At-C-RNA database, a one-stop source for information on circRNAs in<i>Arabidopsis thaliana</i>in a unified format","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3214017971","doi":"https://doi.org/10.1093/database/baab074","mag":"3214017971","pmid":"https://pubmed.ncbi.nlm.nih.gov/34788390"},"language":"en","primary_location":{"id":"doi:10.1093/database/baab074","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab074","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baab074","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011891694","display_name":"Katarzyna Nowis","orcid":"https://orcid.org/0000-0002-0415-0271"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Katarzyna Nowis","raw_affiliation_strings":["Institute of Bioorganic Chemistry, Polish Academy of Sciences, Z. Noskowskiego str. 12/14, Poznan 61-704, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences, Z. Noskowskiego str. 12/14, Poznan 61-704, Poland","institution_ids":["https://openalex.org/I4210152414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024727634","display_name":"Paulina Jackowiak","orcid":"https://orcid.org/0000-0003-4067-6788"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Paulina Jackowiak","raw_affiliation_strings":["Institute of Bioorganic Chemistry, Polish Academy of Sciences, Z. Noskowskiego str. 12/14, Poznan 61-704, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences, Z. Noskowskiego str. 12/14, Poznan 61-704, Poland","institution_ids":["https://openalex.org/I4210152414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019431640","display_name":"Marek Figlerowicz","orcid":"https://orcid.org/0000-0002-6392-0192"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Marek Figlerowicz","raw_affiliation_strings":["Institute of Bioorganic Chemistry, Polish Academy of Sciences, Z. Noskowskiego str. 12/14, Poznan 61-704, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences, Z. Noskowskiego str. 12/14, Poznan 61-704, Poland","institution_ids":["https://openalex.org/I4210152414"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089616013","display_name":"Anna Philips","orcid":"https://orcid.org/0000-0001-5020-8836"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Anna Philips","raw_affiliation_strings":["Institute of Bioorganic Chemistry, Polish Academy of Sciences, Z. Noskowskiego str. 12/14, Poznan 61-704, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences, Z. Noskowskiego str. 12/14, Poznan 61-704, Poland","institution_ids":["https://openalex.org/I4210152414"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5089616013"],"corresponding_institution_ids":["https://openalex.org/I4210152414"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.0812,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.45390867,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2021","issue":"2021","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9205999970436096,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.7900516986846924},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6394175291061401},{"id":"https://openalex.org/keywords/circular-rna","display_name":"Circular RNA","score":0.5798560976982117},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5583013296127319},{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.524383008480072},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.49487727880477905},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.4608864486217499},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.4479385316371918},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4399588406085968},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.41956016421318054},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.40730923414230347},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.34513288736343384},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2983923554420471},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.2155577540397644},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.21004128456115723},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.18175935745239258},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.06968596577644348}],"concepts":[{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.7900516986846924},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6394175291061401},{"id":"https://openalex.org/C2775893923","wikidata":"https://www.wikidata.org/wiki/Q17113455","display_name":"Circular RNA","level":4,"score":0.5798560976982117},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5583013296127319},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.524383008480072},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.49487727880477905},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.4608864486217499},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.4479385316371918},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4399588406085968},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.41956016421318054},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.40730923414230347},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34513288736343384},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2983923554420471},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.2155577540397644},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.21004128456115723},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.18175935745239258},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.06968596577644348}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baab074","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab074","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:34788390","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34788390","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8594480","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8594480","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baab074","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab074","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5979928111","display_name":null,"funder_award_id":"2014/15/D/NZ2/02305","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"}],"funders":[{"id":"https://openalex.org/F4320322511","display_name":"Narodowe Centrum Nauki","ror":"https://ror.org/03ha2q922"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W2058835062","https://openalex.org/W2064165694","https://openalex.org/W2067786443","https://openalex.org/W2086055453","https://openalex.org/W2115171906","https://openalex.org/W2596986410","https://openalex.org/W2739035231","https://openalex.org/W2739038511","https://openalex.org/W2760503369","https://openalex.org/W2769047057","https://openalex.org/W2786247882","https://openalex.org/W2899009607","https://openalex.org/W2914549078","https://openalex.org/W2962730619","https://openalex.org/W2987431562","https://openalex.org/W2999689892","https://openalex.org/W3003456186","https://openalex.org/W3015750581","https://openalex.org/W3081224032","https://openalex.org/W3084275476","https://openalex.org/W6671769621","https://openalex.org/W6741717478","https://openalex.org/W6776049433"],"related_works":["https://openalex.org/W3147805512","https://openalex.org/W1976583488","https://openalex.org/W1594012662","https://openalex.org/W75625030","https://openalex.org/W2106134872","https://openalex.org/W2269421989","https://openalex.org/W3147624048","https://openalex.org/W2006745274","https://openalex.org/W2355042192","https://openalex.org/W2391996571"],"abstract_inverted_index":{"Circular":[0],"RNAs":[1,9],"(circRNAs)":[2],"are":[3,29],"a":[4,53,62,76,112,132],"large":[5],"class":[6],"of":[7,21,33,46,89,143,172],"noncoding":[8],"with":[10],"functions":[11],"that,":[12],"in":[13,36,48,52,75,87,111,129],"most":[14],"cases,":[15],"remain":[16],"unknown.":[17],"Recent":[18],"genome-wide":[19],"analysis":[20],"circRNAs":[22,28,47,74,137,175],"using":[23],"RNA-Seq":[24],"has":[25,40],"revealed":[26],"that":[27,43],"abundant":[30],"and":[31,68,107,141,147,165,179],"some":[32],"them":[34],"conserved":[35],"plants.":[37,130],"Furthermore,":[38],"it":[39],"been":[41],"shown":[42],"the":[44,70,84,134,182],"expression":[45],"plants":[49],"is":[50,61,82],"regulated":[51],"tissue-specific":[54],"manner.":[55],"Arabidopsis":[56],"thaliana":[57,146,174],"circular":[58],"RNA":[59],"database":[60,135,158],"new":[63],"resource":[64,92],"designed":[65],"to":[66,104,121,155,162],"integrate":[67],"standardize":[69],"data":[71,117,164],"available":[72,97],"for":[73,126,152,181],"model":[77],"plant":[78,86],"A.":[79,145,173],"thaliana,":[80],"which":[81],"currently":[83],"best-characterized":[85],"terms":[88],"circRNAs.":[90],"The":[91,157],"integrates":[93],"all":[94,116],"applicable":[95],"publicly":[96],"RNA-seq":[98],"datasets.":[99],"These":[100],"datasets":[101],"were":[102,118],"subjected":[103],"extensive":[105],"reanalysis":[106],"curation,":[108],"yielding":[109],"results":[110],"unified":[113,163],"format.":[114],"Moreover,":[115],"normalized":[119],"according":[120],"our":[122],"optimized":[123],"approach":[124],"developed":[125],"circRNA":[127],"identification":[128],"As":[131],"result,":[133],"accommodates":[136],"identified":[138],"across":[139],"organs":[140],"seedlings":[142],"wild-type":[144],"its":[148],"single-gene":[149],"knockout":[150],"mutants":[151],"genes":[153],"related":[154],"splicing.":[156],"provides":[159],"free":[160],"access":[161],"search":[166],"functionalities,":[167],"thus":[168],"enabling":[169],"comparative":[170],"analyses":[171],"between":[176],"organs,":[177],"variants":[178],"studies":[180],"first":[183],"time.":[184],"Database":[185],"URLhttps://plantcircrna.ibch.poznan.pl/.":[186]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2021-11-22T00:00:00"}
