{"id":"https://openalex.org/W3214138034","doi":"https://doi.org/10.1093/database/baab073","title":"Prototheca-ID: a web-based application for molecular identification of Prototheca species","display_name":"Prototheca-ID: a web-based application for molecular identification of Prototheca species","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3214138034","doi":"https://doi.org/10.1093/database/baab073","mag":"3214138034","pmid":"https://pubmed.ncbi.nlm.nih.gov/34791104"},"language":"en","primary_location":{"id":"doi:10.1093/database/baab073","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab073","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab073/42532747/baab073.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab073/42532747/baab073.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021830272","display_name":"Miko\u0142aj Dziurzy\u0144ski","orcid":"https://orcid.org/0000-0002-5593-9432"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Miko\u0142aj Dziurzy\u0144ski","raw_affiliation_strings":["Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, I. Miecznikowa 1, Warsaw 02-096, Poland"],"raw_orcid":"https://orcid.org/0000-0002-5593-9432","affiliations":[{"raw_affiliation_string":"Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, I. Miecznikowa 1, Warsaw 02-096, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027173915","display_name":"Przemys\u0142aw Decewicz","orcid":"https://orcid.org/0000-0002-5621-7124"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Przemyslaw Decewicz","raw_affiliation_strings":["Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, I. Miecznikowa 1, Warsaw 02-096, Poland"],"raw_orcid":"https://orcid.org/0000-0002-5621-7124","affiliations":[{"raw_affiliation_string":"Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, I. Miecznikowa 1, Warsaw 02-096, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069075673","display_name":"Mateusz Iskra","orcid":"https://orcid.org/0000-0001-6927-514X"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Mateusz Iskra","raw_affiliation_strings":["Department of Medical Microbiology, Institute of Microbiology, Faculty of Biology, University of Warsaw, I. Miecznikowa 1, Warsaw 02-096, Poland"],"raw_orcid":"https://orcid.org/0000-0001-6927-514X","affiliations":[{"raw_affiliation_string":"Department of Medical Microbiology, Institute of Microbiology, Faculty of Biology, University of Warsaw, I. Miecznikowa 1, Warsaw 02-096, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054481376","display_name":"Zofia Baku\u0142a","orcid":"https://orcid.org/0000-0001-7560-2100"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Zofia Baku\u0142a","raw_affiliation_strings":["Department of Medical Microbiology, Institute of Microbiology, Faculty of Biology, University of Warsaw, I. Miecznikowa 1, Warsaw 02-096, Poland"],"raw_orcid":"https://orcid.org/0000-0001-7560-2100","affiliations":[{"raw_affiliation_string":"Department of Medical Microbiology, Institute of Microbiology, Faculty of Biology, University of Warsaw, I. Miecznikowa 1, Warsaw 02-096, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047182053","display_name":"Tomasz Jagielski","orcid":"https://orcid.org/0000-0001-9553-5742"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Tomasz Jagielski","raw_affiliation_strings":["Department of Medical Microbiology, Institute of Microbiology, Faculty of Biology, University of Warsaw, I. Miecznikowa 1, Warsaw 02-096, Poland"],"raw_orcid":"https://orcid.org/0000-0001-9553-5742","affiliations":[{"raw_affiliation_string":"Department of Medical Microbiology, Institute of Microbiology, Faculty of Biology, University of Warsaw, I. Miecznikowa 1, Warsaw 02-096, Poland","institution_ids":["https://openalex.org/I4654613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5047182053"],"corresponding_institution_ids":["https://openalex.org/I4654613"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.4473,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.82119137,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2021","issue":"2021","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11226","display_name":"Milk Quality and Mastitis in Dairy Cows","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1102","display_name":"Agronomy and Crop Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7093040943145752},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5595991611480713},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.477989137172699},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3334483206272125},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3276849389076233},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3161174952983856},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.15627291798591614}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7093040943145752},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5595991611480713},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.477989137172699},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3334483206272125},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3276849389076233},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3161174952983856},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.15627291798591614}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011525","descriptor_name":"Prototheca","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011525","descriptor_name":"Prototheca","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011525","descriptor_name":"Prototheca","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012874","descriptor_name":"Skin Diseases, Infectious","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012874","descriptor_name":"Skin Diseases, Infectious","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012874","descriptor_name":"Skin Diseases, Infectious","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baab073","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab073","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab073/42532747/baab073.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:34791104","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34791104","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8607299","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8607299","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baab073","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab073","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab073/42532747/baab073.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4815983099","display_name":null,"funder_award_id":"BOB-661-54/20","funder_id":"https://openalex.org/F4320323873","funder_display_name":"Uniwersytet Warszawski"}],"funders":[{"id":"https://openalex.org/F4320323873","display_name":"Uniwersytet Warszawski","ror":"https://ror.org/039bjqg32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W2037472930","https://openalex.org/W2057243878","https://openalex.org/W2061628066","https://openalex.org/W2111647009","https://openalex.org/W2115888213","https://openalex.org/W2116766877","https://openalex.org/W2127774996","https://openalex.org/W2142678478","https://openalex.org/W2157727420","https://openalex.org/W2160378127","https://openalex.org/W2614081736","https://openalex.org/W2615991794","https://openalex.org/W2804879953","https://openalex.org/W2884906536","https://openalex.org/W2924579321","https://openalex.org/W2972104114","https://openalex.org/W3102284539","https://openalex.org/W3136405188","https://openalex.org/W4211205437"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191"],"abstract_inverted_index":{"The":[0,153],"genus":[1],"Prototheca":[2,45,92,113],"houses":[3],"unicellular,":[4],"achlorophyllous,":[5],"yeast-like":[6],"algae,":[7],"widely":[8],"distributed":[9],"in":[10,131,144],"the":[11,15,53,63,101,117,120,122,145],"environment.":[12],"Protothecae":[13,148],"are":[14],"only":[16],"known":[17],"plants":[18],"that":[19],"have":[20],"repeatedly":[21],"been":[22],"reported":[23],"to":[24,138],"infect":[25],"vertebrates,":[26],"including":[27],"humans.":[28],"Although":[29],"rare,":[30],"protothecosis":[31],"can":[32],"be":[33],"clinically":[34],"demanding,":[35],"with":[36],"an":[37],"unpredictable":[38],"and":[39,65,84,95,109,128,142,149],"treatment-resistant":[40],"behavior.":[41],"Accurate":[42],"identification":[43,93],"of":[44,52,67,82,86,112,124,147],"species":[46],"relies":[47],"upon":[48],"DNA":[49],"sequence-based":[50],"typing":[51],"mitochondrially":[54],"encoded":[55],"CYTB":[56],"gene.":[57],"However,":[58],"no":[59],"bioinformatic":[60],"tool":[61],"for":[62],"processing":[64],"analyzing":[66],"protothecal":[68],"sequence":[69,75,89],"data":[70],"exists.":[71],"Moreover,":[72],"currently":[73],"available":[74,157],"databases":[76],"suffer":[77],"from":[78],"a":[79,103,132],"limited":[80],"number":[81],"records":[83],"lack":[85],"or":[87],"flawed":[88],"annotations,":[90],"making":[91],"challenging":[94],"often":[96],"inconclusive.":[97],"This":[98],"report":[99],"introduces":[100],"Prototheca-ID,":[102],"user-friendly,":[104],"web-based":[105],"application":[106,118,155],"providing":[107],"fast":[108],"reliable":[110],"speciation":[111],"isolates.":[114],"In":[115],"addition,":[116],"offers":[119],"users":[121],"possibility":[123],"depositing":[125],"their":[126],"sequences":[127],"associated":[129],"metadata":[130],"fully":[133],"open":[134],"Prototheca-ID":[135,154],"database,":[136],"developed":[137],"enhance":[139],"research":[140],"integrity":[141],"quality":[143],"field":[146],"protothecosis.":[150],"Database":[151],"URL:":[152],"is":[156],"at":[158],"https://prototheca-id.org.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
