{"id":"https://openalex.org/W3188212317","doi":"https://doi.org/10.1093/database/baab050","title":"Nabe: an energetic database of amino acid mutations in protein\u2013nucleic acid binding interfaces","display_name":"Nabe: an energetic database of amino acid mutations in protein\u2013nucleic acid binding interfaces","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3188212317","doi":"https://doi.org/10.1093/database/baab050","mag":"3188212317","pmid":"https://pubmed.ncbi.nlm.nih.gov/34389843"},"language":"en","primary_location":{"id":"doi:10.1093/database/baab050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab050","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab050/39737894/baab050.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab050/39737894/baab050.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100738702","display_name":"Junyi Liu","orcid":"https://orcid.org/0000-0001-6276-8240"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Junyi Liu","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China","Viterbi School of Engineering, University of Southern California, 3650 McClintock Ave. OHE 106, Los Angeles, CA 90089, USA"],"raw_orcid":"https://orcid.org/0000-0001-6276-8240","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Viterbi School of Engineering, University of Southern California, 3650 McClintock Ave. OHE 106, Los Angeles, CA 90089, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100326229","display_name":"Siyu Liu","orcid":"https://orcid.org/0000-0001-7089-2006"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siyu Liu","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009767936","display_name":"Chenzhe Liu","orcid":"https://orcid.org/0000-0001-7530-6723"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenzhe Liu","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100366779","display_name":"Ya\u2010Ping Zhang","orcid":"https://orcid.org/0000-0002-5401-1114"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaping Zhang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026401600","display_name":"Yuliang Pan","orcid":"https://orcid.org/0000-0002-4551-6057"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuliang Pan","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086141660","display_name":"Zixiang Wang","orcid":"https://orcid.org/0000-0002-9956-621X"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zixiang Wang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100727956","display_name":"Jiacheng Wang","orcid":"https://orcid.org/0000-0002-9049-5523"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiacheng Wang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009424559","display_name":"Ting Bin Wen","orcid":"https://orcid.org/0000-0001-6572-0920"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ting Wen","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085608332","display_name":"Lei Deng","orcid":"https://orcid.org/0000-0003-2869-1619"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lei Deng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, 22 Shaoshan South Road, Changsha 410075, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5085608332"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.8955,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.72905838,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"2021","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.8012950420379639},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.4564012587070465},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4493468701839447},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37529900670051575},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.3420528173446655},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3383450210094452},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.30304956436157227},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22928857803344727}],"concepts":[{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.8012950420379639},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.4564012587070465},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4493468701839447},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37529900670051575},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.3420528173446655},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3383450210094452},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.30304956436157227},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22928857803344727}],"mesh":[{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baab050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab050","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab050/39737894/baab050.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:34389843","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34389843","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8363842","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8363842","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baab050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab050","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab050/39737894/baab050.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G4765830214","display_name":null,"funder_award_id":"61972422","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G564333647","display_name":null,"funder_award_id":"61672541","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3188212317.pdf"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W769759530","https://openalex.org/W1965549841","https://openalex.org/W1979447111","https://openalex.org/W1999390565","https://openalex.org/W2051710717","https://openalex.org/W2063614307","https://openalex.org/W2073576377","https://openalex.org/W2073995192","https://openalex.org/W2084831115","https://openalex.org/W2099672241","https://openalex.org/W2120777670","https://openalex.org/W2123009167","https://openalex.org/W2136206140","https://openalex.org/W2157735020","https://openalex.org/W2157807259","https://openalex.org/W2164656441","https://openalex.org/W2168164063","https://openalex.org/W2280886488","https://openalex.org/W2290562923","https://openalex.org/W2314868955","https://openalex.org/W2363637013","https://openalex.org/W2413938120","https://openalex.org/W2605361745","https://openalex.org/W2765694924","https://openalex.org/W2766808155","https://openalex.org/W2777941847","https://openalex.org/W2798552692","https://openalex.org/W2890724260","https://openalex.org/W2895146543","https://openalex.org/W2904602199","https://openalex.org/W2924197217","https://openalex.org/W2935793619","https://openalex.org/W2951748044","https://openalex.org/W2965956244","https://openalex.org/W3038927768","https://openalex.org/W3080371575","https://openalex.org/W3084524758","https://openalex.org/W3085584475","https://openalex.org/W6650249170","https://openalex.org/W6739531199","https://openalex.org/W6745767567"],"related_works":["https://openalex.org/W1971444612","https://openalex.org/W1543504406","https://openalex.org/W633173308","https://openalex.org/W2802691951","https://openalex.org/W2003530972","https://openalex.org/W2383750441","https://openalex.org/W1572021523","https://openalex.org/W2061946247","https://openalex.org/W3004967179","https://openalex.org/W2135990064"],"abstract_inverted_index":{"Protein-nucleic":[0],"acid":[1,90,125,147],"complexes":[2],"play":[3],"essential":[4],"roles":[5],"in":[6,25,57,74,100,131,144,168],"regulating":[7],"transcription,":[8],"translation,":[9],"DNA":[10],"replication,":[11],"repair":[12],"and":[13,17,31,34,92,102,117,134,137,159,184],"recombination,":[14],"RNA":[15],"processing":[16],"translocation.":[18],"Site-directed":[19],"mutagenesis":[20,37],"has":[21],"been":[22,110],"extremely":[23],"useful":[24],"understanding":[26],"the":[27,47,61,96,122,154,165,169],"principles":[28],"of":[29,63,88,138,171],"protein-DNA":[30,101,133,158],"protein-RNA":[32,103,135,160],"interactions,":[33],"experimentally":[35,66,111],"determined":[36],"data":[38,118],"are":[39,141],"prerequisites":[40],"for":[41,45,105],"designing":[42],"effective":[43],"algorithms":[44],"predicting":[46],"binding":[48,97,107],"affinity":[49],"change":[50],"upon":[51],"mutation.":[52],"However,":[53],"a":[54,182],"vital":[55],"challenge":[56],"this":[58,80],"area":[59],"is":[60,121],"lack":[62],"sufficient":[64],"public":[65],"recognized":[67],"mutation":[68,126],"data,":[69,155,179],"which":[70,106],"leads":[71],"to":[72,151,177],"difficulties":[73],"developing":[75],"computational":[76],"prediction":[77],"methods.":[78],"In":[79],"article,":[81],"we":[82],"present":[83],"Nabe,":[84],"an":[85],"integrated":[86],"database":[87],"amino":[89],"mutations":[91,130,143],"their":[93],"effects":[94],"on":[95],"free":[98],"energy":[99],"interactions":[104],"affinities":[108],"have":[109],"determined.":[112],"Compared":[113],"with":[114],"existing":[115],"databases":[116,162],"sets,":[119],"Nabe":[120,156,180],"largest":[123],"protein-nucleic":[124,146],"database,":[127],"containing":[128],"2506":[129],"473":[132],"complexes,":[136],"that":[139],"1751":[140],"alanine":[142],"405":[145],"complexes.":[148],"For":[149],"researchers":[150],"conveniently":[152],"utilize":[153],"assembles":[157],"benchmark":[161],"by":[163],"adopting":[164],"data-processing":[166],"procedures":[167],"majority":[170],"models.":[172],"To":[173],"further":[174],"facilitate":[175],"users":[176],"query":[178],"provides":[181],"searchable":[183],"graphical":[185],"web":[186],"page.":[187],"Database":[188],"URL:":[189],"http://nabe.denglab.org.":[190]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
