{"id":"https://openalex.org/W3179655688","doi":"https://doi.org/10.1093/database/baab041","title":"TIDB: a comprehensive database of trained immunity","display_name":"TIDB: a comprehensive database of trained immunity","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3179655688","doi":"https://doi.org/10.1093/database/baab041","mag":"3179655688"},"language":"en","primary_location":{"id":"doi:10.1093/database/baab041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab041","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab041/38888604/baab041.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab041/38888604/baab041.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100641607","display_name":"Yang Cao","orcid":"https://orcid.org/0000-0001-7787-8506"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yang Cao","raw_affiliation_strings":["Department of Environmental Medicine, Tianjin Institute of Environmental and Operational Medicine, No.1 Dali Road, Heping District, Tianjin 300050, China"],"affiliations":[{"raw_affiliation_string":"Department of Environmental Medicine, Tianjin Institute of Environmental and Operational Medicine, No.1 Dali Road, Heping District, Tianjin 300050, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101911013","display_name":"Qingyang Dong","orcid":"https://orcid.org/0000-0001-5664-9093"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Qingyang Dong","raw_affiliation_strings":["Department of Environmental Medicine, Tianjin Institute of Environmental and Operational Medicine, No.1 Dali Road, Heping District, Tianjin 300050, China"],"affiliations":[{"raw_affiliation_string":"Department of Environmental Medicine, Tianjin Institute of Environmental and Operational Medicine, No.1 Dali Road, Heping District, Tianjin 300050, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100411795","display_name":"Dan Wang","orcid":"https://orcid.org/0000-0002-1054-8040"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dan Wang","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, No.38 Life Science Park Road, Changping District, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, No.38 Life Science Park Road, Changping District, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100414285","display_name":"Ying Liu","orcid":"https://orcid.org/0000-0002-6540-0473"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ying Liu","raw_affiliation_strings":["Department of Environmental Medicine, Tianjin Institute of Environmental and Operational Medicine, No.1 Dali Road, Heping District, Tianjin 300050, China"],"affiliations":[{"raw_affiliation_string":"Department of Environmental Medicine, Tianjin Institute of Environmental and Operational Medicine, No.1 Dali Road, Heping District, Tianjin 300050, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100365982","display_name":"Pengcheng Zhang","orcid":"https://orcid.org/0000-0002-4546-0022"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pengcheng Zhang","raw_affiliation_strings":["Department of Environmental Medicine, Tianjin Institute of Environmental and Operational Medicine, No.1 Dali Road, Heping District, Tianjin 300050, China"],"affiliations":[{"raw_affiliation_string":"Department of Environmental Medicine, Tianjin Institute of Environmental and Operational Medicine, No.1 Dali Road, Heping District, Tianjin 300050, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037940644","display_name":"Xiaobo Yu","orcid":"https://orcid.org/0000-0003-2352-9866"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaobo Yu","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, No.38 Life Science Park Road, Changping District, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, No.38 Life Science Park Road, Changping District, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100612851","display_name":"Chao Niu","orcid":"https://orcid.org/0000-0002-0416-0613"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Chao Niu","raw_affiliation_strings":["Department of Environmental Medicine, Tianjin Institute of Environmental and Operational Medicine, No.1 Dali Road, Heping District, Tianjin 300050, China"],"affiliations":[{"raw_affiliation_string":"Department of Environmental Medicine, Tianjin Institute of Environmental and Operational Medicine, No.1 Dali Road, Heping District, Tianjin 300050, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5037940644","https://openalex.org/A5100612851"],"corresponding_institution_ids":["https://openalex.org/I4210149540"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.8178,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.70063066,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"2021","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13410","display_name":"Immune responses and vaccinations","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13410","display_name":"Immune responses and vaccinations","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11171","display_name":"Diabetes and associated disorders","score":0.9769999980926514,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10833","display_name":"Vaccine Coverage and Hesitancy","score":0.9625999927520752,"subfield":{"id":"https://openalex.org/subfields/3306","display_name":"Health"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5586874485015869},{"id":"https://openalex.org/keywords/immunity","display_name":"Immunity","score":0.5018477439880371},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4179134964942932},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4174897074699402},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.41087907552719116},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1835072934627533},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.12944531440734863},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.09393453598022461}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5586874485015869},{"id":"https://openalex.org/C2779341262","wikidata":"https://www.wikidata.org/wiki/Q182581","display_name":"Immunity","level":3,"score":0.5018477439880371},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4179134964942932},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4174897074699402},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.41087907552719116},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1835072934627533},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.12944531440734863},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.09393453598022461}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/database/baab041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab041","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab041/38888604/baab041.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8271126","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8271126","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baab041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab041","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab041/38888604/baab041.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3179655688.pdf","grobid_xml":"https://content.openalex.org/works/W3179655688.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W156645367","https://openalex.org/W1968365367","https://openalex.org/W1989277387","https://openalex.org/W1996960782","https://openalex.org/W2000323986","https://openalex.org/W2004773897","https://openalex.org/W2043764521","https://openalex.org/W2067031028","https://openalex.org/W2070519801","https://openalex.org/W2085281378","https://openalex.org/W2103017472","https://openalex.org/W2107580398","https://openalex.org/W2116797415","https://openalex.org/W2119220491","https://openalex.org/W2464717012","https://openalex.org/W2506377511","https://openalex.org/W2537231733","https://openalex.org/W2557169014","https://openalex.org/W2560235353","https://openalex.org/W2743002757","https://openalex.org/W2766609999","https://openalex.org/W2783329544","https://openalex.org/W2783642412","https://openalex.org/W2786772450","https://openalex.org/W2808147913","https://openalex.org/W2898375074","https://openalex.org/W2899726004","https://openalex.org/W2900353268","https://openalex.org/W2950595506","https://openalex.org/W2950956759","https://openalex.org/W2990092235","https://openalex.org/W3009920944","https://openalex.org/W3018079554","https://openalex.org/W3211402536","https://openalex.org/W6606263545","https://openalex.org/W6724458390","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W4395014643"],"abstract_inverted_index":{"Abstract":[0],"Trained":[1,73],"immunity":[2,34],"is":[3,44,59,66],"a":[4,77],"newly":[5],"emerging":[6],"concept":[7],"that":[8,32,80],"defines":[9],"the":[10,13,48,62,94,106,109],"ability":[11],"of":[12,108,112],"innate":[14],"immune":[15,19],"system":[16],"to":[17,40,47,68,104],"form":[18],"memory":[20],"and":[21,64,89,123,139],"provide":[22],"long-lasting":[23],"protection":[24],"against":[25],"previously":[26],"encountered":[27],"antigens.":[28],"Accumulating":[29],"evidence":[30],"reveals":[31],"trained":[33,56,83],"not":[35],"only":[36],"has":[37],"broad":[38],"benefits":[39],"host":[41,49],"defense":[42],"but":[43],"also":[45,100],"harmful":[46],"in":[50,61],"chronic":[51],"inflammatory":[52],"diseases.":[53],"However,":[54],"all":[55],"immunity-related":[57,84],"information":[58],"scattered":[60],"literature":[63,96],"thus":[65],"difficult":[67],"access.":[69],"Here,":[70],"we":[71],"describe":[72],"Immunity":[74],"DataBase":[75],"(TIDB),":[76],"comprehensive":[78],"database":[79],"provides":[81,101],"well-studied":[82],"genes":[85,111],"from":[86],"human,":[87],"rat":[88],"mouse":[90],"as":[91,93],"well":[92],"related":[95],"evidence.":[97],"Moreover,":[98],"TIDB":[99,130],"three":[102],"modules":[103],"analyze":[105],"function":[107],"trained-immunity-related":[110],"interest,":[113],"including":[114],"Reactome":[115],"pathway":[116],"over-representation":[117],"analysis,":[118],"Gene":[119],"Ontology":[120],"enrichment":[121],"analysis":[122],"protein\u2013protein":[124],"interaction":[125],"subnetwork":[126],"reconstruction.":[127],"We":[128],"believe":[129],"will":[131],"help":[132],"developing":[133],"valuable":[134],"strategies":[135],"for":[136],"vaccine":[137],"design":[138],"immune-mediated":[140],"disease":[141],"therapy.":[142],"Database":[143],"URL:":[144],"http://www.ieom-tm.com/tidb":[145]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2021-07-19T00:00:00"}
