{"id":"https://openalex.org/W3146297443","doi":"https://doi.org/10.1093/database/baab015","title":"Wormicloud: a new text summarization tool based on word clouds to explore the <i>C. elegans</i> literature","display_name":"Wormicloud: a new text summarization tool based on word clouds to explore the <i>C. elegans</i> literature","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3146297443","doi":"https://doi.org/10.1093/database/baab015","mag":"3146297443","pmid":"https://pubmed.ncbi.nlm.nih.gov/33787871"},"language":"en","primary_location":{"id":"doi:10.1093/database/baab015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab015","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab015/36992795/baab015.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab015/36992795/baab015.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004162519","display_name":"Valerio Arnaboldi","orcid":"https://orcid.org/0000-0002-2563-5374"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Valerio Arnaboldi","raw_affiliation_strings":["Division of Biology and Biological Engineering 156-29, California Institute of Technology, 1200 E California Blvd, Pasadena, CA 91125, USA"],"affiliations":[{"raw_affiliation_string":"Division of Biology and Biological Engineering 156-29, California Institute of Technology, 1200 E California Blvd, Pasadena, CA 91125, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101946202","display_name":"Jaehyoung Cho","orcid":"https://orcid.org/0000-0002-6534-116X"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jaehyoung Cho","raw_affiliation_strings":["Division of Biology and Biological Engineering 156-29, California Institute of Technology, 1200 E California Blvd, Pasadena, CA 91125, USA"],"affiliations":[{"raw_affiliation_string":"Division of Biology and Biological Engineering 156-29, California Institute of Technology, 1200 E California Blvd, Pasadena, CA 91125, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033624132","display_name":"Paul W. Sternberg","orcid":"https://orcid.org/0000-0002-7699-0173"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Paul W Sternberg","raw_affiliation_strings":["Division of Biology and Biological Engineering 156-29, California Institute of Technology, 1200 E California Blvd, Pasadena, CA 91125, USA"],"affiliations":[{"raw_affiliation_string":"Division of Biology and Biological Engineering 156-29, California Institute of Technology, 1200 E California Blvd, Pasadena, CA 91125, USA","institution_ids":["https://openalex.org/I122411786"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5033624132"],"corresponding_institution_ids":["https://openalex.org/I122411786"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.1333,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.73930152,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"2021","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9470000267028809,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9470000267028809,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.9055227041244507},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7187985777854919},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.6260884404182434},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5072731375694275},{"id":"https://openalex.org/keywords/tag-cloud","display_name":"Tag cloud","score":0.5023500919342041},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4626484811306},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.45806270837783813},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.36571192741394043},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27498120069503784},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.18770042061805725},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.11621835827827454},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08001375198364258}],"concepts":[{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.9055227041244507},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7187985777854919},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.6260884404182434},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5072731375694275},{"id":"https://openalex.org/C26983874","wikidata":"https://www.wikidata.org/wiki/Q263864","display_name":"Tag cloud","level":3,"score":0.5023500919342041},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4626484811306},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.45806270837783813},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.36571192741394043},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27498120069503784},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.18770042061805725},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.11621835827827454},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08001375198364258},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baab015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab015","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab015/36992795/baab015.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:33787871","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33787871","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:authors.library.caltech.edu:108628","is_oa":false,"landing_page_url":"https://authors.library.caltech.edu/108628/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8011436","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8011436","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baab015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab015","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab015/36992795/baab015.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G1454486428","display_name":null,"funder_award_id":"U24HG010859","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G7610175361","display_name":null,"funder_award_id":"U24HG002223","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3146297443.pdf","grobid_xml":"https://content.openalex.org/works/W3146297443.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W74835874","https://openalex.org/W2024523631","https://openalex.org/W2103017472","https://openalex.org/W2138487969","https://openalex.org/W2139507631","https://openalex.org/W2167797769","https://openalex.org/W2479527281","https://openalex.org/W2606131017","https://openalex.org/W2753137392","https://openalex.org/W2789889445","https://openalex.org/W2792457053","https://openalex.org/W2950595506","https://openalex.org/W2976494531","https://openalex.org/W2981657561","https://openalex.org/W3000061935","https://openalex.org/W3036458298","https://openalex.org/W4244393794","https://openalex.org/W6603044328","https://openalex.org/W6675471023","https://openalex.org/W6680134631","https://openalex.org/W6680411152","https://openalex.org/W6684693049","https://openalex.org/W6721944035","https://openalex.org/W6743898424","https://openalex.org/W6749524632","https://openalex.org/W6769086666","https://openalex.org/W6772981500","https://openalex.org/W6779767189"],"related_works":["https://openalex.org/W2366403280","https://openalex.org/W1495108544","https://openalex.org/W2091301346","https://openalex.org/W3148229873","https://openalex.org/W4389760904","https://openalex.org/W2150160875","https://openalex.org/W2972639076","https://openalex.org/W2296205523","https://openalex.org/W2785185646","https://openalex.org/W2123925843"],"abstract_inverted_index":{"Finding":[0],"relevant":[1],"information":[2,30,94],"from":[3,84,195,210],"newly":[4,85],"published":[5,20,86],"scientific":[6,63,118],"papers":[7],"is":[8,129,147,155,190],"becoming":[9],"increasingly":[10],"difficult":[11],"due":[12],"to":[13,43,77,172],"the":[14,26,46,50,93,133,158,206],"pace":[15],"at":[16,131],"which":[17,178],"articles":[18,119],"are":[19],"every":[21],"year":[22],"as":[23,25,67,73,218],"well":[24],"increasing":[27],"amount":[28],"of":[29,49,102,135],"per":[31],"paper.":[32],"Biocuration":[33],"and":[34,58,69,146,152,162,220],"model":[35,143],"organism":[36,144],"databases":[37,145],"provide":[38],"a":[39,99,113,121],"map":[40],"for":[41,80,149,157],"researchers":[42,76,151],"navigate":[44],"through":[45,124,176,192],"complex":[47],"structure":[48],"biomedical":[51],"literature":[52,161,186,211],"by":[53,96,142],"distilling":[54],"knowledge":[55,89],"into":[56],"curated":[57,141],"standardized":[59],"information.":[60],"In":[61,107],"addition,":[62],"search":[64,79,187],"engines":[65],"such":[66,72,217],"PubMed":[68],"text-mining":[70],"tools":[71,216],"Textpresso":[74],"allow":[75],"easily":[78],"specific":[81],"biological":[82],"aspects":[83],"papers,":[87],"facilitating":[88,132],"transfer.":[90],"However,":[91],"digesting":[92],"returned":[95],"these":[97],"systems-often":[98],"large":[100],"number":[101],"documents-still":[103],"requires":[104],"considerable":[105],"effort.":[106],"this":[108],"paper,":[109],"we":[110],"present":[111],"Wormicloud,":[112],"new":[114,136],"tool":[115,128],"that":[116],"summarizes":[117],"in":[120,199],"graphical":[122],"way":[123],"word":[125],"clouds.":[126],"This":[127],"aimed":[130],"discovery":[134],"experimental":[137],"results":[138,182],"not":[139],"yet":[140],"designed":[148],"both":[150],"biocurators.":[153],"Wormicloud":[154,189],"customized":[156],"Caenorhabditis":[159],"elegans":[160],"provides":[163,179],"several":[164],"advantages":[165],"over":[166],"existing":[167,185],"solutions,":[168],"including":[169],"being":[170],"able":[171],"perform":[173],"full-text":[174],"searches":[175,212],"Textpresso,":[177],"more":[180],"accurate":[181],"than":[183],"other":[184,214],"engines.":[188],"integrated":[191],"direct":[193],"links":[194],"gene":[196,207],"interaction":[197],"pages":[198],"WormBase.":[200],"Additionally,":[201],"it":[202],"allows":[203],"analysis":[204],"on":[205],"sets":[208],"obtained":[209],"with":[213],"WormBase":[215],"SimpleMine":[219],"Gene":[221],"Set":[222],"Enrichment.":[223],"Database":[224],"URL:":[225],"https://wormicloud.textpressolab.com.":[226]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2021-04-13T00:00:00"}
