{"id":"https://openalex.org/W3133571965","doi":"https://doi.org/10.1093/database/baab010","title":"UbiNet 2.0: a verified, classified, annotated and updated database of E3 ubiquitin ligase\u2013substrate interactions","display_name":"UbiNet 2.0: a verified, classified, annotated and updated database of E3 ubiquitin ligase\u2013substrate interactions","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3133571965","doi":"https://doi.org/10.1093/database/baab010","mag":"3133571965","pmid":"https://pubmed.ncbi.nlm.nih.gov/33693667"},"language":"en","primary_location":{"id":"doi:10.1093/database/baab010","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab010","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab010/36520472/baab010.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab010/36520472/baab010.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078088913","display_name":"Zhongyan Li","orcid":"https://orcid.org/0000-0002-0132-730X"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhongyan Li","raw_affiliation_strings":["School of Life and Health Sciences, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China"],"affiliations":[{"raw_affiliation_string":"School of Life and Health Sciences, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100325195","display_name":"Siyu Chen","orcid":"https://orcid.org/0000-0003-1156-7910"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siyu Chen","raw_affiliation_strings":["School of Life and Health Sciences, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China"],"affiliations":[{"raw_affiliation_string":"School of Life and Health Sciences, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062800975","display_name":"Jhih-Hua Jhong","orcid":"https://orcid.org/0000-0001-6158-5207"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jhih-Hua Jhong","raw_affiliation_strings":["Warshel Institute for Computational Biology, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China"],"affiliations":[{"raw_affiliation_string":"Warshel Institute for Computational Biology, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070743854","display_name":"Yuxuan Pang","orcid":"https://orcid.org/0000-0002-6778-7034"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxuan Pang","raw_affiliation_strings":["School of Science and Engineering, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China"],"affiliations":[{"raw_affiliation_string":"School of Science and Engineering, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101875147","display_name":"Kai\u2010Yao Huang","orcid":"https://orcid.org/0000-0001-9855-1035"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai-Yao Huang","raw_affiliation_strings":["School of Life and Health Sciences, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China","Warshel Institute for Computational Biology, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China"],"affiliations":[{"raw_affiliation_string":"School of Life and Health Sciences, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China","institution_ids":["https://openalex.org/I4210116924"]},{"raw_affiliation_string":"Warshel Institute for Computational Biology, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054157151","display_name":"Shangfu Li","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shangfu Li","raw_affiliation_strings":["Warshel Institute for Computational Biology, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China"],"affiliations":[{"raw_affiliation_string":"Warshel Institute for Computational Biology, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045675277","display_name":"Tzong-Yi Lee","orcid":"https://orcid.org/0000-0001-8475-7868"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tzong-Yi Lee","raw_affiliation_strings":["School of Life and Health Sciences, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China","Warshel Institute for Computational Biology, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R. China"],"affiliations":[{"raw_affiliation_string":"School of Life and Health Sciences, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R.China","institution_ids":["https://openalex.org/I4210116924"]},{"raw_affiliation_string":"Warshel Institute for Computational Biology, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, P.R. China","institution_ids":["https://openalex.org/I4210116924"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5045675277","https://openalex.org/A5054157151"],"corresponding_institution_ids":["https://openalex.org/I4210116924"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":3.5706,"has_fulltext":false,"cited_by_count":66,"citation_normalized_percentile":{"value":0.94191411,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"2021","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10587","display_name":"Autophagy in Disease and Therapy","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ubiquitin","display_name":"Ubiquitin","score":0.8840458393096924},{"id":"https://openalex.org/keywords/ubiquitin-ligase","display_name":"Ubiquitin ligase","score":0.7923972606658936},{"id":"https://openalex.org/keywords/ubiquitin-protein-ligases","display_name":"Ubiquitin-Protein Ligases","score":0.5328044891357422},{"id":"https://openalex.org/keywords/proteasome","display_name":"Proteasome","score":0.4555938243865967},{"id":"https://openalex.org/keywords/substrate-specificity","display_name":"Substrate specificity","score":0.44400084018707275},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.44101768732070923},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44004857540130615},{"id":"https://openalex.org/keywords/protein-degradation","display_name":"Protein degradation","score":0.4287198781967163},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4083424210548401},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3316560387611389},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.32558587193489075},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29307320713996887},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2789947986602783},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.14824071526527405},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09079813957214355}],"concepts":[{"id":"https://openalex.org/C25602115","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitin","level":3,"score":0.8840458393096924},{"id":"https://openalex.org/C134459356","wikidata":"https://www.wikidata.org/wiki/Q4274835","display_name":"Ubiquitin ligase","level":4,"score":0.7923972606658936},{"id":"https://openalex.org/C2908868211","wikidata":"https://www.wikidata.org/wiki/Q4274835","display_name":"Ubiquitin-Protein Ligases","level":5,"score":0.5328044891357422},{"id":"https://openalex.org/C27740335","wikidata":"https://www.wikidata.org/wiki/Q14878333","display_name":"Proteasome","level":2,"score":0.4555938243865967},{"id":"https://openalex.org/C2994592520","wikidata":"https://www.wikidata.org/wiki/Q5090496","display_name":"Substrate specificity","level":3,"score":0.44400084018707275},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.44101768732070923},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44004857540130615},{"id":"https://openalex.org/C2992195973","wikidata":"https://www.wikidata.org/wiki/Q33123","display_name":"Protein degradation","level":2,"score":0.4287198781967163},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4083424210548401},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3316560387611389},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.32558587193489075},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29307320713996887},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2789947986602783},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.14824071526527405},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09079813957214355}],"mesh":[{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baab010","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab010","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab010/36520472/baab010.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:33693667","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33693667","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7947570","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7947570","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baab010","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab010","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab010/36520472/baab010.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G287154221","display_name":null,"funder_award_id":"32070659","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3133571965.pdf","grobid_xml":"https://content.openalex.org/works/W3133571965.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W596614133","https://openalex.org/W1975027598","https://openalex.org/W1976041483","https://openalex.org/W1977757877","https://openalex.org/W1991793156","https://openalex.org/W2035618305","https://openalex.org/W2035940897","https://openalex.org/W2050284387","https://openalex.org/W2050723187","https://openalex.org/W2061184183","https://openalex.org/W2062510288","https://openalex.org/W2066745745","https://openalex.org/W2067818013","https://openalex.org/W2071201507","https://openalex.org/W2097606916","https://openalex.org/W2103017472","https://openalex.org/W2114070867","https://openalex.org/W2122863289","https://openalex.org/W2140099276","https://openalex.org/W2142183096","https://openalex.org/W2142208763","https://openalex.org/W2154139219","https://openalex.org/W2160708012","https://openalex.org/W2162151166","https://openalex.org/W2162279162","https://openalex.org/W2166699767","https://openalex.org/W2306843701","https://openalex.org/W2344452825","https://openalex.org/W2520780984","https://openalex.org/W2553689505","https://openalex.org/W2559588208","https://openalex.org/W2610582292","https://openalex.org/W2745944099","https://openalex.org/W2805741471","https://openalex.org/W2898364362","https://openalex.org/W2900206619","https://openalex.org/W2918086501","https://openalex.org/W2940680843","https://openalex.org/W2944951456","https://openalex.org/W2988357750","https://openalex.org/W3000673710","https://openalex.org/W3112600195","https://openalex.org/W3134046782","https://openalex.org/W4210702584","https://openalex.org/W6742611052","https://openalex.org/W6770400242"],"related_works":["https://openalex.org/W2112142795","https://openalex.org/W2037487430","https://openalex.org/W2467992412","https://openalex.org/W1966031852","https://openalex.org/W2097763804","https://openalex.org/W2999996443","https://openalex.org/W2088980243","https://openalex.org/W4376133051","https://openalex.org/W4323034334","https://openalex.org/W4303954706"],"abstract_inverted_index":{"Ubiquitination":[0],"is":[1,48,198],"an":[2,49,153],"important":[3],"post-translational":[4],"modification,":[5],"which":[6],"controls":[7],"protein":[8],"turnover":[9],"by":[10,188],"labeling":[11],"malfunctional":[12],"and":[13,19,67,77,101,144,170,215],"redundant":[14],"proteins":[15,37,191],"for":[16,71,95,219],"proteasomal":[17],"degradation,":[18],"also":[20,99,149],"serves":[21],"intriguing":[22],"non-proteolytic":[23],"regulatory":[24,185,224],"functions.":[25],"E3":[26,82,97,122,132],"ubiquitin":[27,142],"ligases,":[28,123],"whose":[29],"substrate":[30,79,145],"specificity":[31,80],"determines":[32],"the":[33,53,73,78,86,90,109,114,131,135,159,181,220],"recognition":[34,91],"of":[35,38,52,75,81,121,130,141,162,165,183,192,222],"target":[36],"ubiquitination,":[39],"play":[40],"crucial":[41],"roles":[42],"in":[43,64,93,134,173],"ubiquitin-proteasome":[44],"system.":[45],"UbiNet":[46,124,196],"2.0":[47,125,197],"updated":[50,209],"version":[51],"database":[54,136],"UbiNet.":[55],"It":[56],"contains":[57],"3332":[58],"experimentally":[59,212],"verified":[60],"E3-substrate":[61],"interactions":[62,172],"(ESIs)":[63],"54":[65],"organisms":[66],"rich":[68],"annotations":[69],"useful":[70],"investigating":[72],"regulation":[74],"ubiquitination":[76,160,189,223],"ligases.":[83],"Based":[84],"on":[85,108,116,138],"accumulated":[87],"ESIs":[88,117,169,214],"data,":[89],"motifs":[92],"substrates":[94],"each":[96],"were":[98],"identified":[100],"a":[102,163,174,199,216],"functional":[103],"enrichment":[104],"analysis":[105],"was":[106],"conducted":[107],"collected":[110],"substrates.":[111],"To":[112],"facilitate":[113,180],"research":[115],"with":[118,152],"different":[119],"categories":[120],"performed":[126],"strictly":[127],"evidence-based":[128],"classification":[129],"ligases":[133],"based":[137],"their":[139],"mechanisms":[140],"transfer":[143],"specificity.":[146],"The":[147,177],"platform":[148,202],"provides":[150,204],"users":[151],"interactive":[154],"tool":[155,178,218],"that":[156,203],"can":[157,179],"visualize":[158],"network":[161],"group":[164],"self-defined":[166],"proteins,":[167],"displaying":[168],"protein-protein":[171],"graphical":[175],"manner.":[176],"exploration":[182],"inner":[184],"relationships":[186],"mediated":[187],"among":[190],"interest.":[193],"In":[194],"summary,":[195],"user-friendly":[200],"web-based":[201],"comprehensive":[205],"as":[206,208],"well":[207],"information":[210],"about":[211],"validated":[213],"visualized":[217],"construction":[221],"networks":[225],"available":[226],"at":[227],"http://awi.cuhk.edu.cn/~ubinet/index.php.":[228]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-31T07:56:22.981413","created_date":"2025-10-10T00:00:00"}
