{"id":"https://openalex.org/W3125467784","doi":"https://doi.org/10.1093/database/baaa113","title":"Large-scale regulatory and signaling network assembly through linked open data","display_name":"Large-scale regulatory and signaling network assembly through linked open data","publication_year":2020,"publication_date":"2020-12-12","ids":{"openalex":"https://openalex.org/W3125467784","doi":"https://doi.org/10.1093/database/baaa113","mag":"3125467784","pmid":"https://pubmed.ncbi.nlm.nih.gov/33459761"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaa113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa113","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa113/35919065/baaa113.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa113/35919065/baaa113.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087769116","display_name":"Marie Lefebvre","orcid":"https://orcid.org/0000-0002-3093-5873"},"institutions":[{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210089449","display_name":"Biologie du Fruit et Pathologie","ror":"https://ror.org/00ccpdp17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I15057530","https://openalex.org/I4210088668","https://openalex.org/I4210089449","https://openalex.org/I4210096859"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"M Lefebvre","raw_affiliation_strings":["UMR 1332 Biologie du Fruit et Pathologie, INRAE, Univ. Bordeaux, 72 Avenue Edouard Bourlaux, CS20032, 33882, Villenave d\u2019Ornon cedex, France"],"affiliations":[{"raw_affiliation_string":"UMR 1332 Biologie du Fruit et Pathologie, INRAE, Univ. Bordeaux, 72 Avenue Edouard Bourlaux, CS20032, 33882, Villenave d\u2019Ornon cedex, France","institution_ids":["https://openalex.org/I4210089449","https://openalex.org/I4210088668","https://openalex.org/I15057530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032067259","display_name":"Alban Gaignard","orcid":"https://orcid.org/0000-0002-3597-8557"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210144168","display_name":"Institut du Thorax","ror":"https://ror.org/049kkt456","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I4210096427","https://openalex.org/I4210144168","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"A Gaignard","raw_affiliation_strings":["Universit\u00e9 de Nantes, CNRS, INSERM, l\u2019Institut du Thorax F-44000, Nantes, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Nantes, CNRS, INSERM, l\u2019Institut du Thorax F-44000, Nantes, France","institution_ids":["https://openalex.org/I4210144168","https://openalex.org/I154526488","https://openalex.org/I97188460","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000156896","display_name":"Maxime Folschette","orcid":"https://orcid.org/0000-0002-3727-2320"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210115519","display_name":"Centre de Recherche en Informatique","ror":"https://ror.org/020cdve92","country_code":"FR","type":"facility","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I4210091621","https://openalex.org/I4210115519","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I7454413","display_name":"\u00c9cole Centrale de Lille","ror":"https://ror.org/01x441g73","country_code":"FR","type":"education","lineage":["https://openalex.org/I7454413"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"M Folschette","raw_affiliation_strings":["Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France"],"affiliations":[{"raw_affiliation_string":"Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France","institution_ids":["https://openalex.org/I4210115519","https://openalex.org/I2279609970","https://openalex.org/I7454413","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066472745","display_name":"Jean\u2010Christophe Bourdon","orcid":"https://orcid.org/0000-0003-4623-9386"},"institutions":[{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210117005","display_name":"Laboratoire des Sciences du Num\u00e9rique de Nantes","ror":"https://ror.org/02snf8m58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100445878","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I4210117005","https://openalex.org/I4210124215","https://openalex.org/I4210127572","https://openalex.org/I4210139971","https://openalex.org/I97188460","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J Bourdon","raw_affiliation_strings":["Universit\u00e9 de Nantes, Centrale Nantes, CNRS, UMR 6004 - LS2N - Laboratoire des Sciences du Num\u00e9rique de Nantes, F-44000 Nantes, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Nantes, Centrale Nantes, CNRS, UMR 6004 - LS2N - Laboratoire des Sciences du Num\u00e9rique de Nantes, F-44000 Nantes, France","institution_ids":["https://openalex.org/I4210117005","https://openalex.org/I100445878","https://openalex.org/I97188460","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067131511","display_name":"Carito Guzio\u0142owski","orcid":"https://orcid.org/0000-0001-5192-0745"},"institutions":[{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210117005","display_name":"Laboratoire des Sciences du Num\u00e9rique de Nantes","ror":"https://ror.org/02snf8m58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100445878","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I4210117005","https://openalex.org/I4210124215","https://openalex.org/I4210127572","https://openalex.org/I4210139971","https://openalex.org/I97188460","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"C Guziolowski","raw_affiliation_strings":["Universit\u00e9 de Nantes, Centrale Nantes, CNRS, UMR 6004 - LS2N - Laboratoire des Sciences du Num\u00e9rique de Nantes, F-44000 Nantes, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Nantes, Centrale Nantes, CNRS, UMR 6004 - LS2N - Laboratoire des Sciences du Num\u00e9rique de Nantes, F-44000 Nantes, France","institution_ids":["https://openalex.org/I4210117005","https://openalex.org/I100445878","https://openalex.org/I97188460","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5067131511"],"corresponding_institution_ids":["https://openalex.org/I100445878","https://openalex.org/I1294671590","https://openalex.org/I4210117005","https://openalex.org/I97188460"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":344,"currency":"EUR","value_usd":371},"fwci":0.0836,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.4705787,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"2021","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7461847066879272},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.6060153841972351},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.5951865315437317},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5415447354316711},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5007669925689697},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.46430471539497375},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43712836503982544},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4273458421230316},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.39073190093040466},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3485453128814697},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3407595753669739},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.2611086368560791},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19716474413871765},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1131824254989624}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7461847066879272},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.6060153841972351},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5951865315437317},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5415447354316711},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5007669925689697},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.46430471539497375},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43712836503982544},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4273458421230316},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.39073190093040466},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3485453128814697},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3407595753669739},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2611086368560791},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19716474413871765},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1131824254989624},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/database/baaa113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa113","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa113/35919065/baaa113.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:33459761","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33459761","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:HAL:hal-03107317v1","is_oa":true,"landing_page_url":"https://hal.archives-ouvertes.fr/hal-03107317","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1758-0463","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-03107317v2","is_oa":true,"landing_page_url":"https://hal.science/hal-03107317","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database - The journal of Biological Databases and Curation, 2021, 2021, pp.baaa113. &#x27E8;10.1093/database/baaa113&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:lilloa.univ-lille.fr:20.500.12210/57092","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.12210/57092","pdf_url":null,"source":{"id":"https://openalex.org/S4306402203","display_name":"LillOA (Universit\u00e9 de Lille (University Of Lille))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210123514","host_organization_name":"Centre d'Etudes en Civilisations, Langues et Litt\u00e9ratures Etrang\u00e8res","host_organization_lineage":["https://openalex.org/I4210123514"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:oskar-bordeaux.fr:20.500.12278/110370","is_oa":true,"landing_page_url":"https://oskar-bordeaux.fr/handle/20.500.12278/110370","pdf_url":null,"source":{"id":"https://openalex.org/S4306402569","display_name":"Oskar-Bordeaux (Universite de Bordeaux)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article de revue"},{"id":"pmh:oai:oskar-bordeaux.fr:20.500.12278/168431","is_oa":true,"landing_page_url":"https://oskar-bordeaux.fr/handle/20.500.12278/168431","pdf_url":null,"source":{"id":"https://openalex.org/S4306402569","display_name":"Oskar-Bordeaux (Universite de Bordeaux)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article de revue"},{"id":"pmh:oai:pubmedcentral.nih.gov:7812716","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7812716","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaa113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa113","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa113/35919065/baaa113.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3125467784.pdf","grobid_xml":"https://content.openalex.org/works/W3125467784.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1513230022","https://openalex.org/W1969709265","https://openalex.org/W1989277387","https://openalex.org/W2023250031","https://openalex.org/W2023292217","https://openalex.org/W2039420810","https://openalex.org/W2096766502","https://openalex.org/W2101906686","https://openalex.org/W2106886631","https://openalex.org/W2121906867","https://openalex.org/W2138669911","https://openalex.org/W2143784594","https://openalex.org/W2150420891","https://openalex.org/W2159675211","https://openalex.org/W2164298117","https://openalex.org/W2164750538","https://openalex.org/W2164928285","https://openalex.org/W2165674132","https://openalex.org/W2493995303","https://openalex.org/W2557833574","https://openalex.org/W2586247031","https://openalex.org/W2767891136","https://openalex.org/W2767914218","https://openalex.org/W2789782740","https://openalex.org/W2913495488","https://openalex.org/W2937662482","https://openalex.org/W2983166786","https://openalex.org/W2999678175","https://openalex.org/W3000554228","https://openalex.org/W4237335579","https://openalex.org/W6684390987","https://openalex.org/W6713147065"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W2101315668","https://openalex.org/W2120890012","https://openalex.org/W4283723149","https://openalex.org/W2286239702","https://openalex.org/W782572168","https://openalex.org/W1982109448","https://openalex.org/W47355381","https://openalex.org/W2167702390"],"abstract_inverted_index":{"Huge":[0],"efforts":[1],"are":[2],"currently":[3],"underway":[4],"to":[5,22,35,68,103],"address":[6],"the":[7,50,70,79],"organization":[8],"of":[9,38,52,72,81,106],"biological":[10,39,57],"knowledge":[11],"through":[12],"linked":[13],"open":[14],"databases.":[15],"These":[16],"databases":[17,45],"can":[18],"be":[19],"automatically":[20],"queried":[21],"reconstruct":[23],"regulatory":[24,74],"and":[25,41,49,75,85,97],"signaling":[26,76],"networks.":[27],"However,":[28],"assembling":[29],"networks":[30,77],"implies":[31],"manual":[32],"operations":[33],"due":[34],"source-specific":[36],"identification":[37],"entities":[40],"relationships,":[42],"multiple":[43],"life-science":[44],"with":[46],"redundant":[47],"information":[48],"difficulty":[51],"recovering":[53],"logical":[54],"flows":[55],"in":[56,78],"pathways.":[58],"We":[59],"propose":[60],"a":[61,104],"framework":[62],"based":[63],"on":[64],"Semantic":[65],"Web":[66],"technologies":[67],"automate":[69],"reconstruction":[71],"large-scale":[73],"context":[80],"tumor":[82],"cells":[83],"modeling":[84],"drug":[86],"screening.":[87],"The":[88,116],"proposed":[89],"tool":[90,117],"is":[91,118],"pyBRAvo":[92],"(python":[93],"Biological":[94],"netwoRk":[95],"Assembly),":[96],"here":[98],"we":[99],"have":[100],"applied":[101],"it":[102],"dataset":[105],"910":[107],"gene":[108],"expression":[109],"measurements":[110],"issued":[111],"from":[112],"liver":[113],"cancer":[114],"patients.":[115],"publicly":[119],"available":[120],"at":[121],"https://github.com/pyBRAvo/pyBRAvo.":[122]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
