{"id":"https://openalex.org/W3135057715","doi":"https://doi.org/10.1093/database/baaa099","title":"An update of KAIKObase, the silkworm genome database","display_name":"An update of KAIKObase, the silkworm genome database","publication_year":2020,"publication_date":"2020-10-26","ids":{"openalex":"https://openalex.org/W3135057715","doi":"https://doi.org/10.1093/database/baaa099","mag":"3135057715","pmid":"https://pubmed.ncbi.nlm.nih.gov/33645624"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaa099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa099","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa099/36409422/baaa099.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa099/36409422/baaa099.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003841833","display_name":"Ching-chia Yang","orcid":"https://orcid.org/0000-0003-0760-9209"},"institutions":[{"id":"https://openalex.org/I3018761593","display_name":"Institute of Agrobiological Sciences","ror":"https://ror.org/01786mp71","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]},{"id":"https://openalex.org/I1323638106","display_name":"National Agriculture and Food Research Organization","ror":"https://ror.org/023v4bd62","country_code":"JP","type":"government","lineage":["https://openalex.org/I1323638106"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ching-chia Yang","raw_affiliation_strings":["Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, Ibaraki 305-8634, Japan"],"affiliations":[{"raw_affiliation_string":"Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, Ibaraki 305-8634, Japan","institution_ids":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036981599","display_name":"Kakeru Yokoi","orcid":"https://orcid.org/0000-0002-6672-5341"},"institutions":[{"id":"https://openalex.org/I3018761593","display_name":"Institute of Agrobiological Sciences","ror":"https://ror.org/01786mp71","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]},{"id":"https://openalex.org/I1323638106","display_name":"National Agriculture and Food Research Organization","ror":"https://ror.org/023v4bd62","country_code":"JP","type":"government","lineage":["https://openalex.org/I1323638106"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kakeru Yokoi","raw_affiliation_strings":["Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, Ibaraki 305-8634, Japan"],"affiliations":[{"raw_affiliation_string":"Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, Ibaraki 305-8634, Japan","institution_ids":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101868213","display_name":"Kimiko Yamamoto","orcid":"https://orcid.org/0000-0003-1662-6932"},"institutions":[{"id":"https://openalex.org/I1323638106","display_name":"National Agriculture and Food Research Organization","ror":"https://ror.org/023v4bd62","country_code":"JP","type":"government","lineage":["https://openalex.org/I1323638106"]},{"id":"https://openalex.org/I3018761593","display_name":"Institute of Agrobiological Sciences","ror":"https://ror.org/01786mp71","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kimiko Yamamoto","raw_affiliation_strings":["Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, Ibaraki 305-8634, Japan"],"affiliations":[{"raw_affiliation_string":"Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, Ibaraki 305-8634, Japan","institution_ids":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083694130","display_name":"Akiya Jouraku","orcid":"https://orcid.org/0000-0003-3264-8293"},"institutions":[{"id":"https://openalex.org/I1323638106","display_name":"National Agriculture and Food Research Organization","ror":"https://ror.org/023v4bd62","country_code":"JP","type":"government","lineage":["https://openalex.org/I1323638106"]},{"id":"https://openalex.org/I3018761593","display_name":"Institute of Agrobiological Sciences","ror":"https://ror.org/01786mp71","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Akiya Jouraku","raw_affiliation_strings":["Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, Ibaraki 305-8634, Japan"],"affiliations":[{"raw_affiliation_string":"Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, Ibaraki 305-8634, Japan","institution_ids":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5083694130"],"corresponding_institution_ids":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":3.0168,"has_fulltext":true,"cited_by_count":47,"citation_normalized_percentile":{"value":0.90785129,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"2021","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14048","display_name":"Silkworms and Sericulture Research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T14048","display_name":"Silkworms and Sericulture Research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11075","display_name":"Insect Resistance and Genetics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12336","display_name":"Insect Utilization and Effects","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5949693918228149},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5140353441238403},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.47827088832855225},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.42539915442466736},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3876011371612549},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.36503392457962036},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24765518307685852},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13082018494606018},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06485199928283691}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5949693918228149},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5140353441238403},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47827088832855225},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.42539915442466736},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3876011371612549},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.36503392457962036},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24765518307685852},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13082018494606018},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06485199928283691}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baaa099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa099","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa099/36409422/baaa099.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:33645624","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33645624","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7918157","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7918157","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaa099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa099","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa099/36409422/baaa099.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4000000059604645}],"awards":[{"id":"https://openalex.org/G2392934618","display_name":null,"funder_award_id":"JPMJSA1507","funder_id":"https://openalex.org/F4320338125","funder_display_name":"Science and Technology Research Partnership for Sustainable Development"},{"id":"https://openalex.org/G3618301946","display_name":null,"funder_award_id":"SATREPS","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G4611969921","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G4864544293","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G5277970381","display_name":null,"funder_award_id":"SATREPS","funder_id":"https://openalex.org/F4320322716","funder_display_name":"Japan International Cooperation Agency"},{"id":"https://openalex.org/G7485138276","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"}],"funders":[{"id":"https://openalex.org/F4320322716","display_name":"Japan International Cooperation Agency","ror":"https://ror.org/022es3t03"},{"id":"https://openalex.org/F4320324213","display_name":"National Agriculture and Food Research Organization","ror":"https://ror.org/023v4bd62"},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320338125","display_name":"Science and Technology Research Partnership for Sustainable Development","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3135057715.pdf","grobid_xml":"https://content.openalex.org/works/W3135057715.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W161958389","https://openalex.org/W1483934638","https://openalex.org/W1677250833","https://openalex.org/W1767772592","https://openalex.org/W1900937478","https://openalex.org/W1970904634","https://openalex.org/W1984206366","https://openalex.org/W2006500919","https://openalex.org/W2047137759","https://openalex.org/W2051094217","https://openalex.org/W2053551770","https://openalex.org/W2058711839","https://openalex.org/W2058816652","https://openalex.org/W2064607717","https://openalex.org/W2080895359","https://openalex.org/W2085315239","https://openalex.org/W2096525273","https://openalex.org/W2097099878","https://openalex.org/W2101254476","https://openalex.org/W2101291993","https://openalex.org/W2101488656","https://openalex.org/W2111679716","https://openalex.org/W2112335360","https://openalex.org/W2118059471","https://openalex.org/W2118328698","https://openalex.org/W2123225648","https://openalex.org/W2138614316","https://openalex.org/W2142678478","https://openalex.org/W2144490750","https://openalex.org/W2145477956","https://openalex.org/W2151464048","https://openalex.org/W2157923275","https://openalex.org/W2160345222","https://openalex.org/W2162097287","https://openalex.org/W2168736241","https://openalex.org/W2168909179","https://openalex.org/W2169204540","https://openalex.org/W2507356073","https://openalex.org/W2756293157","https://openalex.org/W2789567970","https://openalex.org/W2789843538","https://openalex.org/W2801007809","https://openalex.org/W2893974579","https://openalex.org/W2898204371","https://openalex.org/W2900359059","https://openalex.org/W2916114485","https://openalex.org/W2920865808","https://openalex.org/W2922536284","https://openalex.org/W2923079871","https://openalex.org/W2950595506","https://openalex.org/W2951640687","https://openalex.org/W2995979133","https://openalex.org/W3169368580","https://openalex.org/W4241303123","https://openalex.org/W4243601081","https://openalex.org/W4297073864"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2086525401","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W3178279768","https://openalex.org/W2888097224","https://openalex.org/W2773861473","https://openalex.org/W193851735","https://openalex.org/W1971903861"],"abstract_inverted_index":{"KAIKObase":[0,41,112],"was":[1],"established":[2],"in":[3,39,64,78],"2009":[4],"as":[5,23,25],"the":[6,10,30,34,65,108,114,121],"genome":[7,26,74,96],"database":[8],"of":[9,33,111],"domesticated":[11],"silkworm":[12,47,73],"Bombyx":[13],"mori.":[14],"It":[15],"provides":[16],"several":[17],"gene":[18,86,99],"sets":[19],"and":[20,48,62,81,84,97,113,119],"genetic":[21],"maps":[22],"well":[24],"annotation":[27],"obtained":[28],"from":[29],"sequencing":[31],"project":[32],"International":[35],"Silkworm":[36],"Genome":[37],"Consortium":[38],"2008.":[40],"has":[42],"been":[43],"used":[44],"widely":[45],"for":[46],"insect":[49],"studies":[50],"even":[51],"though":[52],"there":[53,89],"are":[54],"some":[55],"erroneous":[56],"predicted":[57],"genes":[58],"due":[59],"to":[60,93,101,116],"misassembly":[61],"gaps":[63],"genome.":[66],"In":[67,103],"2019,":[68],"we":[69,106],"released":[70],"a":[71,91],"new":[72,95,98],"assembly,":[75],"showing":[76],"improvements":[77],"gap":[79],"closure":[80],"covering":[82],"more":[83],"longer":[85],"models.":[87],"Therefore,":[88],"is":[90],"need":[92],"include":[94],"models":[100],"KAIKObase.":[102],"this":[104],"article,":[105],"present":[107],"updated":[109],"contents":[110],"methods":[115],"generate,":[117],"integrate":[118],"analyze":[120],"data":[122],"sets.":[123],"Database":[124],"URL:":[125],"https://kaikobase.dna.affrc.go.jp.":[126]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":25},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":3}],"updated_date":"2026-04-12T07:58:50.170612","created_date":"2025-10-10T00:00:00"}
