{"id":"https://openalex.org/W3102299942","doi":"https://doi.org/10.1093/database/baaa078","title":"A Collection of Benchmark Data Sets for Knowledge Graph-based Similarity in the Biomedical Domain","display_name":"A Collection of Benchmark Data Sets for Knowledge Graph-based Similarity in the Biomedical Domain","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3102299942","doi":"https://doi.org/10.1093/database/baaa078","mag":"3102299942","pmid":"https://pubmed.ncbi.nlm.nih.gov/33181823"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaa078","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa078","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baaa078","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026567527","display_name":"C. Cardoso","orcid":"https://orcid.org/0000-0003-4941-5496"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Carlota Cardoso","raw_affiliation_strings":["Departamento de inform\u00e1tica, LASIGE Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749 - 016 Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Departamento de inform\u00e1tica, LASIGE Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749 - 016 Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063408223","display_name":"Rita T. Sousa","orcid":"https://orcid.org/0000-0002-7241-8970"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Rita T Sousa","raw_affiliation_strings":["Departamento de inform\u00e1tica, LASIGE Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749 - 016 Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Departamento de inform\u00e1tica, LASIGE Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749 - 016 Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047602412","display_name":"Sebastian K\u00f6hler","orcid":"https://orcid.org/0000-0002-5316-1399"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sebastian K\u00f6hler","raw_affiliation_strings":["Ada Health GmbH Karl-Liebknecht-Str. 1. 10178 Berlin"],"affiliations":[{"raw_affiliation_string":"Ada Health GmbH Karl-Liebknecht-Str. 1. 10178 Berlin","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034898355","display_name":"C\u00e1tia Pesquita","orcid":"https://orcid.org/0000-0002-1847-9393"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Catia Pesquita","raw_affiliation_strings":["Departamento de inform\u00e1tica, LASIGE Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749 - 016 Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Departamento de inform\u00e1tica, LASIGE Faculdade de Ci\u00eancias da Universidade de Lisboa, 1749 - 016 Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5026567527"],"corresponding_institution_ids":["https://openalex.org/I141596103"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.836,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.72112662,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2020","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7614496350288391},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6944872140884399},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6402130722999573},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5808302164077759},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5623572468757629},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5541182160377502},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.5290711522102356},{"id":"https://openalex.org/keywords/data-collection","display_name":"Data collection","score":0.49577292799949646},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46026474237442017},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3686332106590271},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3677533268928528},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.26365604996681213},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09629681706428528},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.08261871337890625}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7614496350288391},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6944872140884399},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6402130722999573},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5808302164077759},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5623572468757629},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5541182160377502},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.5290711522102356},{"id":"https://openalex.org/C133462117","wikidata":"https://www.wikidata.org/wiki/Q4929239","display_name":"Data collection","level":2,"score":0.49577292799949646},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46026474237442017},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3686332106590271},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3677533268928528},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.26365604996681213},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09629681706428528},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.08261871337890625},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baaa078","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa078","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:33181823","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33181823","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7661097","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7661097","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaa078","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa078","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1759428316","display_name":null,"funder_award_id":"UIDP/00408/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G2089664753","display_name":null,"funder_award_id":"UIDB/00408/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5198366819","display_name":null,"funder_award_id":"PTDC/EEI-ESS/4633/2014","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6069306475","display_name":null,"funder_award_id":"SFRH/BD/145377/2019","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W11193629","https://openalex.org/W142944101","https://openalex.org/W1552847225","https://openalex.org/W1598142793","https://openalex.org/W1668989518","https://openalex.org/W1837605127","https://openalex.org/W1926956132","https://openalex.org/W1980948656","https://openalex.org/W1986566140","https://openalex.org/W2012361142","https://openalex.org/W2042301222","https://openalex.org/W2084168100","https://openalex.org/W2084377579","https://openalex.org/W2094500541","https://openalex.org/W2099364528","https://openalex.org/W2099862356","https://openalex.org/W2101595316","https://openalex.org/W2103017472","https://openalex.org/W2107952955","https://openalex.org/W2111973517","https://openalex.org/W2119027485","https://openalex.org/W2120770540","https://openalex.org/W2127480960","https://openalex.org/W2127795553","https://openalex.org/W2133681442","https://openalex.org/W2134197776","https://openalex.org/W2135526239","https://openalex.org/W2146495783","https://openalex.org/W2151529283","https://openalex.org/W2157911533","https://openalex.org/W2158057897","https://openalex.org/W2159583324","https://openalex.org/W2162151166","https://openalex.org/W2172228455","https://openalex.org/W2479117119","https://openalex.org/W2521064104","https://openalex.org/W2521492858","https://openalex.org/W2546848075","https://openalex.org/W2548028586","https://openalex.org/W2565684071","https://openalex.org/W2605794761","https://openalex.org/W2618475127","https://openalex.org/W2800915484","https://openalex.org/W2805949464","https://openalex.org/W2887809899","https://openalex.org/W2891585877","https://openalex.org/W2898402099","https://openalex.org/W2899397837","https://openalex.org/W2901332105","https://openalex.org/W2926140117","https://openalex.org/W2950225692","https://openalex.org/W2996970264","https://openalex.org/W3003315801","https://openalex.org/W3100078588","https://openalex.org/W3104846106","https://openalex.org/W3165240900","https://openalex.org/W6600436526","https://openalex.org/W6605768010","https://openalex.org/W6635761325","https://openalex.org/W6637184120","https://openalex.org/W6638750155","https://openalex.org/W6677712588","https://openalex.org/W6685392771","https://openalex.org/W6738267881","https://openalex.org/W6754351845","https://openalex.org/W6776488958"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2745001401","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W4246352526","https://openalex.org/W2121910908","https://openalex.org/W915438175","https://openalex.org/W4230315250"],"abstract_inverted_index":{"The":[0],"ability":[1],"to":[2,23,41,77],"compare":[3],"entities":[4],"within":[5],"a":[6,10,72,85],"knowledge":[7,62,104],"graph":[8],"is":[9,27,81],"cornerstone":[11],"technique":[12],"for":[13,101,109],"several":[14,61],"applications,":[15],"ranging":[16],"from":[17,118],"the":[18,32,42,96],"integration":[19],"of":[20,28,44,54,87,161],"heterogeneous":[21],"data":[22,75,90,114,117,166],"machine":[24],"learning.":[25],"It":[26],"particular":[29],"importance":[30],"in":[31,98],"biomedical":[33,103,110,121],"domain,":[34],"where":[35],"semantic":[36,64,171],"similarity":[37,65,172],"can":[38],"be":[39],"applied":[40],"prediction":[43],"protein-protein":[45,142],"interactions,":[46],"associations":[47],"between":[48],"diseases":[49],"and":[50,125,129,144,153],"genes,":[51],"cellular":[52],"localization":[53],"proteins,":[55],"among":[56],"others.":[57],"In":[58],"recent":[59],"years,":[60],"graph-based":[63],"measures":[66],"have":[67,150],"been":[68],"developed,":[69],"but":[70],"building":[71,99],"gold":[73],"standard":[74],"set":[76],"support":[78],"their":[79],"evaluation":[80],"non-trivial.":[82],"We":[83],"present":[84],"collection":[86],"21":[88],"benchmark":[89],"sets":[91,115,149],"that":[92],"aim":[93],"at":[94,158],"circumventing":[95],"difficulties":[97],"benchmarks":[100],"large":[102],"graphs":[105],"by":[106],"exploiting":[107],"proxies":[108],"entity":[111],"similarity.":[112,147],"These":[113],"include":[116],"two":[119],"successful":[120],"ontologies,":[122],"Gene":[123],"Ontology":[124],"Human":[126],"Phenotype":[127],"Ontology,":[128],"explore":[130],"proxy":[131],"similarities":[132],"calculated":[133],"based":[134],"on":[135],"protein":[136,139],"sequence":[137],"similarity,":[138,141],"family":[140],"interactions":[143],"phenotype-based":[145],"gene":[146],"Data":[148],"varying":[151],"sizes":[152],"cover":[154],"four":[155],"different":[156,159],"species":[157],"levels":[160],"annotation":[162],"completion.":[163],"For":[164],"each":[165],"set,":[167],"we":[168],"also":[169],"provide":[170],"computations":[173],"with":[174],"state-of-the-art":[175],"representative":[176],"measures.":[177],"Database":[178],"URL:":[179],"https://github.com/liseda-lab/kgsim-benchmark.":[180]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
