{"id":"https://openalex.org/W3033931439","doi":"https://doi.org/10.1093/database/baaa039","title":"GreenCircRNA: a database for plant circRNAs that act as miRNA decoys","display_name":"GreenCircRNA: a database for plant circRNAs that act as miRNA decoys","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3033931439","doi":"https://doi.org/10.1093/database/baaa039","mag":"3033931439","pmid":"https://pubmed.ncbi.nlm.nih.gov/32510565"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaa039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa039/33366177/baaa039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa039/33366177/baaa039.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100369375","display_name":"Jingjing Zhang","orcid":"https://orcid.org/0000-0002-1041-793X"},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingjing Zhang","raw_affiliation_strings":["College of Life Sciences, Shaanxi Normal University, West Chang'an Street, Xi'an 710062, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Shaanxi Normal University, West Chang'an Street, Xi'an 710062, China","institution_ids":["https://openalex.org/I88830068"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043933189","display_name":"Zhiqiang Hao","orcid":null},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiqiang Hao","raw_affiliation_strings":["College of Life Sciences, Shaanxi Normal University, West Chang'an Street, Xi'an 710062, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Shaanxi Normal University, West Chang'an Street, Xi'an 710062, China","institution_ids":["https://openalex.org/I88830068"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089045426","display_name":"Shuwei Yin","orcid":null},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuwei Yin","raw_affiliation_strings":["College of Life Sciences, Shaanxi Normal University, West Chang'an Street, Xi'an 710062, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Shaanxi Normal University, West Chang'an Street, Xi'an 710062, China","institution_ids":["https://openalex.org/I88830068"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100636085","display_name":"Guanglin Li","orcid":"https://orcid.org/0000-0001-7617-1824"},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guanglin Li","raw_affiliation_strings":["College of Life Sciences, Shaanxi Normal University, West Chang'an Street, Xi'an 710062, China","Key Laboratory of Ministry of Education for Medicinal Plant Resource and Natural Pharmaceutical Chemistry, Shaanxi Normal University, West Chang'an Street, Xi'an 710062, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Shaanxi Normal University, West Chang'an Street, Xi'an 710062, China","institution_ids":["https://openalex.org/I88830068"]},{"raw_affiliation_string":"Key Laboratory of Ministry of Education for Medicinal Plant Resource and Natural Pharmaceutical Chemistry, Shaanxi Normal University, West Chang'an Street, Xi'an 710062, China","institution_ids":["https://openalex.org/I88830068"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100636085"],"corresponding_institution_ids":["https://openalex.org/I88830068"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.7896,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.85496814,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"2020","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plant-metabolism","display_name":"Plant metabolism","score":0.6513962149620056},{"id":"https://openalex.org/keywords/decoy","display_name":"Decoy","score":0.6512506604194641},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5379377603530884},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5210863351821899},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.516465425491333},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.5139562487602234},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4979531764984131},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.36081188917160034},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24169349670410156},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.20757311582565308},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.1651138961315155}],"concepts":[{"id":"https://openalex.org/C2992992772","wikidata":"https://www.wikidata.org/wiki/Q185973","display_name":"Plant metabolism","level":4,"score":0.6513962149620056},{"id":"https://openalex.org/C2779179475","wikidata":"https://www.wikidata.org/wiki/Q3545649","display_name":"Decoy","level":3,"score":0.6512506604194641},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5379377603530884},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5210863351821899},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.516465425491333},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.5139562487602234},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4979531764984131},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36081188917160034},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24169349670410156},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.20757311582565308},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.1651138961315155},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baaa039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa039/33366177/baaa039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:32510565","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32510565","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7278087","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7278087","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaa039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa039/33366177/baaa039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6499999761581421}],"awards":[{"id":"https://openalex.org/G1132205522","display_name":null,"funder_award_id":"GK201403004","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G161647425","display_name":null,"funder_award_id":"31370329","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2303866097","display_name":null,"funder_award_id":"NCET-12\u20130896","funder_id":"https://openalex.org/F4320334924","funder_display_name":"Program for New Century Excellent Talents in University"},{"id":"https://openalex.org/G8457680715","display_name":null,"funder_award_id":"31770333","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8510984973","display_name":null,"funder_award_id":"11631012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334924","display_name":"Program for New Century Excellent Talents in University","ror":"https://ror.org/01mv9t934"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3033931439.pdf","grobid_xml":"https://content.openalex.org/works/W3033931439.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1981726010","https://openalex.org/W1985550917","https://openalex.org/W2019230794","https://openalex.org/W2031593782","https://openalex.org/W2040576679","https://openalex.org/W2042160423","https://openalex.org/W2046379971","https://openalex.org/W2058835062","https://openalex.org/W2059938159","https://openalex.org/W2064165694","https://openalex.org/W2086055453","https://openalex.org/W2086561953","https://openalex.org/W2106812975","https://openalex.org/W2120794445","https://openalex.org/W2128034264","https://openalex.org/W2132940486","https://openalex.org/W2147625377","https://openalex.org/W2147806662","https://openalex.org/W2152719653","https://openalex.org/W2152723140","https://openalex.org/W2159675211","https://openalex.org/W2161159766","https://openalex.org/W2165868549","https://openalex.org/W2174483798","https://openalex.org/W2177654732","https://openalex.org/W2302185643","https://openalex.org/W2409075727","https://openalex.org/W2463753492","https://openalex.org/W2464299117","https://openalex.org/W2530008209","https://openalex.org/W2570440397","https://openalex.org/W2586427318","https://openalex.org/W2596986410","https://openalex.org/W2607556098","https://openalex.org/W2612501314","https://openalex.org/W2622004629","https://openalex.org/W2770914667","https://openalex.org/W2782794356","https://openalex.org/W2786247882","https://openalex.org/W2788795124","https://openalex.org/W2909481667","https://openalex.org/W2940152749","https://openalex.org/W2978277525","https://openalex.org/W2981152754","https://openalex.org/W3001484508","https://openalex.org/W6714453948","https://openalex.org/W6768750390"],"related_works":["https://openalex.org/W2415073839","https://openalex.org/W1555596338","https://openalex.org/W1238053778","https://openalex.org/W2350944221","https://openalex.org/W4239355779","https://openalex.org/W2057946556","https://openalex.org/W2782845443","https://openalex.org/W2354605264","https://openalex.org/W4398389810","https://openalex.org/W2049700522"],"abstract_inverted_index":{"Circular":[0],"RNAs":[1,6],"(circRNAs)":[2],"are":[3,14,43,119],"endogenous":[4,132],"non-coding":[5],"that":[7,36,79,192],"form":[8],"a":[9,22,58,84],"covalently":[10],"closed":[11],"continuous":[12],"loop,":[13],"widely":[15],"distributed":[16],"and":[17,42,93,122,164,179,197],"play":[18],"important":[19],"roles":[20],"in":[21,45,116,156],"series":[23],"of":[24,32,90,108,114,128,136,190,202],"developmental":[25],"processes.":[26],"In":[27],"plants,":[28],"an":[29],"increasing":[30],"number":[31,201],"studies":[33],"have":[34],"found":[35],"circRNAs":[37,62,74,92,104,115,129,137,155,191],"can":[38],"regulate":[39],"plant":[40,46,73,91,203],"metabolism":[41],"involved":[44],"responses":[47],"to":[48,63,82,141],"biotic":[49],"or":[50],"abiotic":[51],"stress.":[52],"Acting":[53],"as":[54,76,130,143,168,170,194],"miRNA":[55,77,144,195],"decoys":[56,78,145,196],"is":[57,80,183],"critical":[59],"way":[60],"for":[61,72,87,153,187],"perform":[64],"their":[65,94,160],"functions.":[66,97],"Therefore,":[67],"we":[68,149],"developed":[69],"GreenCircRNA-a":[70],"database":[71,99,118,186],"acting":[75],"dedicated":[81],"providing":[83],"plant-based":[85],"platform":[86],"detailed":[88],"exploration":[89],"potential":[95],"decoy":[96],"This":[98],"includes":[100],"over":[101],"210":[102],"000":[103],"from":[105,138],"69":[106],"species":[107],"plants;":[109],"the":[110,126,134,154,157,184,188,199],"main":[111],"data":[112],"sources":[113],"this":[117],"NCBI,":[120],"EMBL-EBI":[121],"Phytozome.":[123],"To":[124],"investigate":[125],"function":[127],"competitive":[131],"RNAs,":[133],"possibility":[135],"38":[139],"plants":[140],"act":[142,193],"was":[146],"predicted.":[147],"Moreover,":[148],"provide":[150],"basic":[151],"information":[152],"database,":[158],"including":[159],"locations,":[161],"host":[162,173],"genes":[163],"relative":[165],"expression":[166],"levels,":[167],"well":[169],"full-length":[171],"sequences,":[172],"gene":[174],"GO":[175],"(Gene":[176],"Ontology)":[177],"numbers":[178],"circRNA":[180],"visualization.":[181],"GreenCircRNA":[182],"first":[185],"prediction":[189],"contains":[198],"largest":[200],"species.":[204],"Database":[205],"URL:":[206],"http://greencirc.cn.":[207]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":14}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
