{"id":"https://openalex.org/W3036458298","doi":"https://doi.org/10.1093/database/baaa037","title":"Automated generation of gene summaries at the Alliance of Genome Resources","display_name":"Automated generation of gene summaries at the Alliance of Genome Resources","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3036458298","doi":"https://doi.org/10.1093/database/baaa037","mag":"3036458298","pmid":"https://pubmed.ncbi.nlm.nih.gov/32559296"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaa037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa037","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa037/33405542/baaa037.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa037/33405542/baaa037.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001134499","display_name":"Ranjana Kishore","orcid":"https://orcid.org/0000-0002-1478-7671"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ranjana Kishore","raw_affiliation_strings":["WormBase, Division of Biology and Biological Engineering, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA 91125, USA"],"affiliations":[{"raw_affiliation_string":"WormBase, Division of Biology and Biological Engineering, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA 91125, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004162519","display_name":"Valerio Arnaboldi","orcid":"https://orcid.org/0000-0002-2563-5374"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Valerio Arnaboldi","raw_affiliation_strings":["WormBase, Division of Biology and Biological Engineering, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA 91125, USA"],"affiliations":[{"raw_affiliation_string":"WormBase, Division of Biology and Biological Engineering, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA 91125, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032460049","display_name":"Ceri E. Van Slyke","orcid":"https://orcid.org/0000-0002-2244-7917"},"institutions":[{"id":"https://openalex.org/I181233156","display_name":"University of Oregon","ror":"https://ror.org/0293rh119","country_code":"US","type":"education","lineage":["https://openalex.org/I181233156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ceri E Van Slyke","raw_affiliation_strings":["ZFIN, The Institute of Neuroscience, 222 Huestis Hall, University of Oregon, Eugene, OR 97403-1254, USA"],"affiliations":[{"raw_affiliation_string":"ZFIN, The Institute of Neuroscience, 222 Huestis Hall, University of Oregon, Eugene, OR 97403-1254, USA","institution_ids":["https://openalex.org/I181233156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111902938","display_name":"Juancarlos Chan","orcid":"https://orcid.org/0000-0002-7259-8107"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Juancarlos Chan","raw_affiliation_strings":["WormBase, Division of Biology and Biological Engineering, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA 91125, USA"],"affiliations":[{"raw_affiliation_string":"WormBase, Division of Biology and Biological Engineering, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA 91125, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086980566","display_name":"Robert S Nash","orcid":"https://orcid.org/0000-0002-3726-7441"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert S Nash","raw_affiliation_strings":["Saccharomyces Genome Database, Department of Genetics, Stanford University, 3165 Porter Drive, Palo Alto, CA 94304, USA"],"affiliations":[{"raw_affiliation_string":"Saccharomyces Genome Database, Department of Genetics, Stanford University, 3165 Porter Drive, Palo Alto, CA 94304, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013718761","display_name":"Jose-Maria Urbano","orcid":"https://orcid.org/0000-0002-6644-8129"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jose M Urbano","raw_affiliation_strings":["FlyBase, Department of Physiology, Development and Neuroscience, 7 Downing Pl, University of Cambridge, Cambridge CB2 3DY, UK"],"affiliations":[{"raw_affiliation_string":"FlyBase, Department of Physiology, Development and Neuroscience, 7 Downing Pl, University of Cambridge, Cambridge CB2 3DY, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051955100","display_name":"M. Eileen Dolan","orcid":"https://orcid.org/0000-0001-7732-3295"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary E Dolan","raw_affiliation_strings":["MGI, The Jackson Laboratory, Bar Harbor, ME 04609, USA"],"affiliations":[{"raw_affiliation_string":"MGI, The Jackson Laboratory, Bar Harbor, ME 04609, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036217383","display_name":"Stacia R. Engel","orcid":"https://orcid.org/0000-0001-5472-917X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stacia R Engel","raw_affiliation_strings":["Saccharomyces Genome Database, Department of Genetics, Stanford University, 3165 Porter Drive, Palo Alto, CA 94304, USA"],"affiliations":[{"raw_affiliation_string":"Saccharomyces Genome Database, Department of Genetics, Stanford University, 3165 Porter Drive, Palo Alto, CA 94304, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031193159","display_name":"Mary Shimoyama","orcid":"https://orcid.org/0000-0003-1176-0796"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]},{"id":"https://openalex.org/I102461120","display_name":"Marquette University","ror":"https://ror.org/04gr4te78","country_code":"US","type":"education","lineage":["https://openalex.org/I102461120"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary Shimoyama","raw_affiliation_strings":["Rat Genome Database, Department of Biomedical Engineering, Medical College of Wisconsin and Marquette University, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA"],"affiliations":[{"raw_affiliation_string":"Rat Genome Database, Department of Biomedical Engineering, Medical College of Wisconsin and Marquette University, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA","institution_ids":["https://openalex.org/I204308271","https://openalex.org/I102461120"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033624132","display_name":"Paul W. Sternberg","orcid":"https://orcid.org/0000-0002-7699-0173"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul W Sternberg","raw_affiliation_strings":["WormBase, Division of Biology and Biological Engineering, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA 91125, USA"],"affiliations":[{"raw_affiliation_string":"WormBase, Division of Biology and Biological Engineering, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA 91125, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032918281","display_name":"the Alliance of Genome Resources","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"the Alliance of Genome Resources","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5001134499"],"corresponding_institution_ids":["https://openalex.org/I122411786"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.3407,"has_fulltext":true,"cited_by_count":59,"citation_normalized_percentile":{"value":0.89282965,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"2020","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7348710894584656},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6095636487007141},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.5961493849754333},{"id":"https://openalex.org/keywords/alliance","display_name":"Alliance","score":0.5735799670219421},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.5132534503936768},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.47770169377326965},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.46628710627555847},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4540988504886627},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4293438494205475},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.32419300079345703},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1651751697063446},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.12707990407943726},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11713343858718872},{"id":"https://openalex.org/keywords/nomenclature","display_name":"Nomenclature","score":0.11167633533477783}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7348710894584656},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6095636487007141},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.5961493849754333},{"id":"https://openalex.org/C2778431023","wikidata":"https://www.wikidata.org/wiki/Q878249","display_name":"Alliance","level":2,"score":0.5735799670219421},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.5132534503936768},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.47770169377326965},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.46628710627555847},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4540988504886627},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4293438494205475},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.32419300079345703},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1651751697063446},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.12707990407943726},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11713343858718872},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.11167633533477783},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baaa037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa037","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa037/33405542/baaa037.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:32559296","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32559296","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:authors.library.caltech.edu:104002","is_oa":true,"landing_page_url":"https://authors.library.caltech.edu/104002/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:mouseion.jax.org:stfb2020-1110","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2020/110","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2020","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7304461","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7304461","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaa037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa037","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa037/33405542/baaa037.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5299999713897705,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1365423410","display_name":null,"funder_award_id":"U24HG010859","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1627472408","display_name":null,"funder_award_id":"HG000330","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2006294599","display_name":null,"funder_award_id":"U24HG002223","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2324095473","display_name":null,"funder_award_id":"HG002659","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2463583488","display_name":null,"funder_award_id":"U41HG000739","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3401731667","display_name":null,"funder_award_id":"U41HG002273","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4119736662","display_name":null,"funder_award_id":"HG010859","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5249690734","display_name":null,"funder_award_id":"1U24HG010859-01","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G6414905909","display_name":null,"funder_award_id":"HG0022","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6577719867","display_name":"WormBase: an evolving resource for nematode biology","funder_award_id":"MR/L001020/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G7848967005","display_name":null,"funder_award_id":"MR/L001020/1 (WB)","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G8046924394","display_name":null,"funder_award_id":"HL64541","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G839285823","display_name":null,"funder_award_id":"HG002273","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3036458298.pdf","grobid_xml":"https://content.openalex.org/works/W3036458298.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W971865635","https://openalex.org/W1236321187","https://openalex.org/W1963838724","https://openalex.org/W1980885411","https://openalex.org/W1993519105","https://openalex.org/W2031282466","https://openalex.org/W2068309352","https://openalex.org/W2078433128","https://openalex.org/W2090262690","https://openalex.org/W2095723013","https://openalex.org/W2096525273","https://openalex.org/W2100858341","https://openalex.org/W2102221598","https://openalex.org/W2105039688","https://openalex.org/W2108984616","https://openalex.org/W2112466127","https://openalex.org/W2124758832","https://openalex.org/W2150392051","https://openalex.org/W2151459176","https://openalex.org/W2157054705","https://openalex.org/W2171815113","https://openalex.org/W2179282661","https://openalex.org/W2617252197","https://openalex.org/W2890662912","https://openalex.org/W2895487334","https://openalex.org/W2898204371","https://openalex.org/W2899915536","https://openalex.org/W2900069807","https://openalex.org/W2900255713","https://openalex.org/W2900353268","https://openalex.org/W2901527454","https://openalex.org/W2915769855","https://openalex.org/W2950595506","https://openalex.org/W2973232653","https://openalex.org/W2976494531","https://openalex.org/W2980573777","https://openalex.org/W2981657561","https://openalex.org/W2985386410","https://openalex.org/W2996657600","https://openalex.org/W4210365506","https://openalex.org/W4237403594","https://openalex.org/W4248735723"],"related_works":["https://openalex.org/W79619734","https://openalex.org/W2010487328","https://openalex.org/W2340589664","https://openalex.org/W4281750475","https://openalex.org/W3125302265","https://openalex.org/W3087321790","https://openalex.org/W4242931393","https://openalex.org/W186091728","https://openalex.org/W2114295463","https://openalex.org/W1986836233"],"abstract_inverted_index":{"Short":[0],"paragraphs":[1],"that":[2,47,66,148,208],"describe":[3],"gene":[4,9,28,33,51,64,71,112,139,199,234,246,250,270,280],"function,":[5],"referred":[6],"to":[7,41,61,81,116,154,228,265],"as":[8,189],"summaries,":[10,34],"are":[11,141,201,274],"valued":[12],"by":[13,157],"users":[14],"of":[15,27,32,56,125,134,166,170,176,182,185,223,240,257,260],"biological":[16],"knowledgebases":[17,40],"for":[18,39,74,105,192,236],"the":[19,54,85,111,123,135,164,167,174,177,195,214,224,241],"ease":[20],"with":[21,128,203],"which":[22],"they":[23,209],"convey":[24],"key":[25],"aspects":[26],"function.":[29],"Manual":[30],"curation":[31,221],"while":[35],"desirable,":[36],"is":[37],"difficult":[38],"sustain.":[42],"We":[43],"developed":[44,144],"an":[45],"algorithm":[46,147,162],"uses":[48,102],"curated,":[49],"structured":[50,231],"data":[52,72,107,212],"at":[53,213],"Alliance":[55,97,205,225,269],"Genome":[57],"Resources":[58],"(Alliance;":[59],"www.alliancegenome.org)":[60],"automatically":[62,244],"generate":[63],"summaries":[65,136,200,235,247,273],"simulate":[67],"natural":[68,119],"language.":[69],"The":[70,100,161,197],"used":[73],"this":[75],"purpose":[76],"include":[77],"curated":[78],"associations":[79],"(annotations)":[80],"ontology":[82,150,187],"terms":[83,126,156,171],"from":[84,122],"Gene":[86],"Ontology,":[87,89],"Disease":[88],"model":[90],"organism":[91],"knowledgebase":[92],"(MOK)-specific":[93],"anatomy":[94],"ontologies":[95],"and":[96,172,232,254],"orthology":[98],"data.":[99],"method":[101,217],"sentence":[103,121],"templates":[104],"each":[106,129,186,204],"category":[108],"included":[109,276],"in":[110,114,152,194],"summary":[113],"order":[115,153],"build":[117],"a":[118,145,190],"language":[120],"list":[124],"associated":[127],"gene.":[130],"To":[131],"improve":[132],"readability":[133],"when":[137],"numerous":[138],"annotations":[140],"present,":[142],"we":[143],"new":[146],"traverses":[149],"graphs":[151],"group":[155],"their":[158],"common":[159],"ancestors.":[160],"optimizes":[163],"coverage":[165],"initial":[168],"set":[169],"limits":[173],"length":[175],"final":[178],"summary,":[179],"using":[180],"measures":[181],"information":[183],"content":[184],"term":[188],"criterion":[191],"inclusion":[193],"summary.":[196],"automated":[198],"generated":[202,245],"release,":[206],"ensuring":[207],"reflect":[210],"current":[211],"Alliance.":[215,242],"Our":[216],"effectively":[218],"leverages":[219],"category-specific":[220],"efforts":[222],"member":[226,238],"databases":[227],"create":[229],"modular,":[230],"standardized":[233],"seven":[237],"species":[239],"These":[243],"make":[248],"cross-species":[249],"function":[251],"comparisons":[252],"tenable":[253],"increase":[255],"discoverability":[256],"potential":[258],"models":[259],"human":[261],"disease.":[262],"In":[263],"addition":[264],"being":[266],"displayed":[267],"on":[268,277],"pages,":[271],"these":[272],"also":[275],"several":[278],"MOK":[279],"pages.":[281]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
