{"id":"https://openalex.org/W3038773239","doi":"https://doi.org/10.1093/database/baaa032","title":"Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases","display_name":"Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3038773239","doi":"https://doi.org/10.1093/database/baaa032","mag":"3038773239","pmid":"https://pubmed.ncbi.nlm.nih.gov/32621602"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaa032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa032","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa032/33462312/baaa032.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa032/33462312/baaa032.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045265142","display_name":"Shawna Spoor","orcid":null},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shawna Spoor","raw_affiliation_strings":["Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA"],"affiliations":[{"raw_affiliation_string":"Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077021682","display_name":"Connor Wytko","orcid":null},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Connor Wytko","raw_affiliation_strings":["Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA"],"affiliations":[{"raw_affiliation_string":"Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090684956","display_name":"Brian Pando","orcid":"https://orcid.org/0000-0002-8133-631X"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian Soto","raw_affiliation_strings":["Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA"],"affiliations":[{"raw_affiliation_string":"Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100423262","display_name":"Ming Chen","orcid":"https://orcid.org/0000-0002-3164-8884"},"institutions":[{"id":"https://openalex.org/I4210151202","display_name":"Plant (United States)","ror":"https://ror.org/05g223j58","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151202"]},{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ming Chen","raw_affiliation_strings":["Entomology and Plant Pathology, University of Tennessee, 2505, 370 E J. Chapman Dr Plant Biotechnology Building, Knoxville, TN 37996, USA"],"affiliations":[{"raw_affiliation_string":"Entomology and Plant Pathology, University of Tennessee, 2505, 370 E J. Chapman Dr Plant Biotechnology Building, Knoxville, TN 37996, USA","institution_ids":["https://openalex.org/I75027704","https://openalex.org/I4210151202"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071568297","display_name":"Abdullah Almsaeed","orcid":"https://orcid.org/0000-0002-3804-1188"},"institutions":[{"id":"https://openalex.org/I4210151202","display_name":"Plant (United States)","ror":"https://ror.org/05g223j58","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151202"]},{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abdullah Almsaeed","raw_affiliation_strings":["Entomology and Plant Pathology, University of Tennessee, 2505, 370 E J. Chapman Dr Plant Biotechnology Building, Knoxville, TN 37996, USA"],"affiliations":[{"raw_affiliation_string":"Entomology and Plant Pathology, University of Tennessee, 2505, 370 E J. Chapman Dr Plant Biotechnology Building, Knoxville, TN 37996, USA","institution_ids":["https://openalex.org/I75027704","https://openalex.org/I4210151202"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034043439","display_name":"Bradford Condon","orcid":"https://orcid.org/0000-0003-4377-9205"},"institutions":[{"id":"https://openalex.org/I4210151202","display_name":"Plant (United States)","ror":"https://ror.org/05g223j58","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151202"]},{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bradford Condon","raw_affiliation_strings":["Entomology and Plant Pathology, University of Tennessee, 2505, 370 E J. Chapman Dr Plant Biotechnology Building, Knoxville, TN 37996, USA"],"affiliations":[{"raw_affiliation_string":"Entomology and Plant Pathology, University of Tennessee, 2505, 370 E J. Chapman Dr Plant Biotechnology Building, Knoxville, TN 37996, USA","institution_ids":["https://openalex.org/I75027704","https://openalex.org/I4210151202"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059305373","display_name":"Nic Herndon","orcid":"https://orcid.org/0000-0001-9712-148X"},"institutions":[{"id":"https://openalex.org/I186335123","display_name":"East Carolina University","ror":"https://ror.org/01vx35703","country_code":"US","type":"education","lineage":["https://openalex.org/I186335123"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nic Herndon","raw_affiliation_strings":["Dept of Computer Science, East Carolina University, College of Engineering and Technology East 5th Street Greenville, NC 27858-4353, USA"],"affiliations":[{"raw_affiliation_string":"Dept of Computer Science, East Carolina University, College of Engineering and Technology East 5th Street Greenville, NC 27858-4353, USA","institution_ids":["https://openalex.org/I186335123"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014388327","display_name":"Heidi Hough","orcid":null},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Heidi Hough","raw_affiliation_strings":["Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA"],"affiliations":[{"raw_affiliation_string":"Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000749878","display_name":"Sook Jung","orcid":"https://orcid.org/0000-0003-3968-2769"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sook Jung","raw_affiliation_strings":["Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA"],"affiliations":[{"raw_affiliation_string":"Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109150012","display_name":"Meg Staton","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151202","display_name":"Plant (United States)","ror":"https://ror.org/05g223j58","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151202"]},{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meg Staton","raw_affiliation_strings":["Entomology and Plant Pathology, University of Tennessee, 2505, 370 E J. Chapman Dr Plant Biotechnology Building, Knoxville, TN 37996, USA"],"affiliations":[{"raw_affiliation_string":"Entomology and Plant Pathology, University of Tennessee, 2505, 370 E J. Chapman Dr Plant Biotechnology Building, Knoxville, TN 37996, USA","institution_ids":["https://openalex.org/I75027704","https://openalex.org/I4210151202"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061135911","display_name":"Jill Wegrzyn","orcid":"https://orcid.org/0000-0001-5923-0888"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jill Wegrzyn","raw_affiliation_strings":["Ecology and Evolutionary Biology, University of Connecticut, 75 N. Eagleville Road, Unit 3043 Storrs, CT 06269-3043, USA"],"affiliations":[{"raw_affiliation_string":"Ecology and Evolutionary Biology, University of Connecticut, 75 N. Eagleville Road, Unit 3043 Storrs, CT 06269-3043, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045435393","display_name":"Dorrie Main","orcid":"https://orcid.org/0000-0002-1162-2724"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dorrie Main","raw_affiliation_strings":["Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA"],"affiliations":[{"raw_affiliation_string":"Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021360029","display_name":"F. Alex Feltus","orcid":null},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"F Alex Feltus","raw_affiliation_strings":["Dept of Genetics and Biochemistry, Clemson University, 154 Poole Agricultural Center Clemson, SC 29634, USA"],"affiliations":[{"raw_affiliation_string":"Dept of Genetics and Biochemistry, Clemson University, 154 Poole Agricultural Center Clemson, SC 29634, USA","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015114586","display_name":"Stephen Ficklin","orcid":"https://orcid.org/0000-0001-9138-6292"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Stephen P Ficklin","raw_affiliation_strings":["Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA"],"affiliations":[{"raw_affiliation_string":"Dept of Horticulture, Washington State University, 149 Johnson Hall 646414, Pullman, WA 99164-6414, USA","institution_ids":["https://openalex.org/I72951846"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5015114586"],"corresponding_institution_ids":["https://openalex.org/I72951846"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.4596,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.79972134,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2020","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9736999869346619,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8468292355537415},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7739216685295105},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5987991690635681},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5887854695320129},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4896848499774933},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4836510419845581},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.4776100814342499},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4521394968032837},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42167460918426514},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3886232376098633}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8468292355537415},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7739216685295105},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5987991690635681},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5887854695320129},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4896848499774933},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4836510419845581},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.4776100814342499},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4521394968032837},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42167460918426514},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3886232376098633},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baaa032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa032","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa032/33462312/baaa032.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:32621602","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32621602","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7334887","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7334887","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaa032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa032","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa032/33462312/baaa032.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6399999856948853,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3038773239.pdf","grobid_xml":"https://content.openalex.org/works/W3038773239.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1784029848","https://openalex.org/W1967204795","https://openalex.org/W1983833794","https://openalex.org/W2001709424","https://openalex.org/W2022296304","https://openalex.org/W2022351903","https://openalex.org/W2043701535","https://openalex.org/W2055043387","https://openalex.org/W2078962046","https://openalex.org/W2085824957","https://openalex.org/W2090962902","https://openalex.org/W2098229525","https://openalex.org/W2110417468","https://openalex.org/W2116041602","https://openalex.org/W2142678478","https://openalex.org/W2144610372","https://openalex.org/W2151397621","https://openalex.org/W2154952425","https://openalex.org/W2167556622","https://openalex.org/W2235409271","https://openalex.org/W2302501749","https://openalex.org/W2346143774","https://openalex.org/W2402910431","https://openalex.org/W2497936373","https://openalex.org/W2519548434","https://openalex.org/W2574808400","https://openalex.org/W2605897695","https://openalex.org/W2773787581","https://openalex.org/W2780155440","https://openalex.org/W2886783468","https://openalex.org/W2895984795","https://openalex.org/W2910442120","https://openalex.org/W2964307465","https://openalex.org/W2966562087","https://openalex.org/W2990714382","https://openalex.org/W2997998108","https://openalex.org/W3022964627","https://openalex.org/W4299579164","https://openalex.org/W6713097118","https://openalex.org/W6726983628","https://openalex.org/W6949594722"],"related_works":["https://openalex.org/W47352601","https://openalex.org/W2981957539","https://openalex.org/W4287378204","https://openalex.org/W2545422590","https://openalex.org/W4286950177","https://openalex.org/W4285337522","https://openalex.org/W3203498468","https://openalex.org/W2464866501","https://openalex.org/W2289852464","https://openalex.org/W2788261136"],"abstract_inverted_index":{"Online":[0],"biological":[1],"databases":[2,77],"housing":[3],"genomics,":[4],"genetic":[5],"and":[6,28,51,65,144,190],"breeding":[7],"data":[8,26],"can":[9,59,132],"be":[10],"constructed":[11],"using":[12,94,142,162],"the":[13,33,49,81,124,137],"Tripal":[14,16,109,122,152,173],"toolkit.":[15],"is":[17,29,80],"an":[18,163],"open-source,":[19],"internationally":[20],"developed":[21],"framework":[22,47],"that":[23,75,89],"implements":[24],"FAIR":[25],"principles":[27],"meant":[30],"to":[31,83,136,167,185],"ease":[32],"burden":[34],"of":[35,43,53,121,139,179,201],"constructing":[36,188],"such":[37,54],"websites":[38],"for":[39,62,86,114,148,198],"research":[40],"communities.":[41],"Use":[42],"a":[44,101,112],"common,":[45],"open":[46],"improves":[48],"sustainability":[50],"manageability":[52],"as":[55],"site.":[56],"Site":[57,130],"developers":[58,131,184],"create":[60,133],"extensions":[61,70],"their":[63,87,140,151,192],"site":[64,183],"in":[66,100],"turn":[67],"share":[68,146],"those":[69,147],"with":[71,123],"others.":[72],"One":[73],"challenge":[74],"community":[76,141],"often":[78],"face":[79],"need":[82,118],"provide":[84],"tools":[85,97],"users":[88],"analyze":[90],"increasingly":[91],"larger":[92],"datasets":[93],"multiple":[95],"software":[96],"strung":[98],"together":[99],"scientific":[102],"workflow":[103,127],"on":[104,150],"complicated":[105],"computational":[106],"resources.":[107],"The":[108,172],"Galaxy":[110,125,143,174],"module,":[111],"'plug-in'":[113],"Tripal,":[115],"meets":[116],"this":[117],"through":[119],"integration":[120],"Project":[126],"management":[128,200],"system.":[129],"workflows":[134,189],"appropriate":[135],"needs":[138],"then":[145],"execution":[149],"sites":[153],"via":[154],"automatically":[155],"constructed,":[156],"but":[157],"configurable,":[158],"web":[159],"forms":[160],"or":[161],"application":[164],"programming":[165],"interface":[166],"power":[168],"web-based":[169],"analytical":[170],"applications.":[171,203],"module":[175],"helps":[176],"reduce":[177],"duplication":[178],"effort":[180],"by":[181],"allowing":[182],"spend":[186],"time":[187],"building":[191],"applications":[193],"rather":[194],"than":[195],"rebuilding":[196],"infrastructure":[197],"job":[199],"multi-step":[202]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
