{"id":"https://openalex.org/W3021551525","doi":"https://doi.org/10.1093/database/baaa029","title":"The Mnemiopsis Genome Project Portal: integrating new gene expression resources and improving data visualization","display_name":"The Mnemiopsis Genome Project Portal: integrating new gene expression resources and improving data visualization","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3021551525","doi":"https://doi.org/10.1093/database/baaa029","mag":"3021551525","pmid":"https://pubmed.ncbi.nlm.nih.gov/32386298"},"language":"en","primary_location":{"id":"doi:10.1093/database/baaa029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa029","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baaa029","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006800257","display_name":"R. Travis Moreland","orcid":"https://orcid.org/0009-0007-1793-7413"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210090236","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210090236"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R Travis Moreland","raw_affiliation_strings":["Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210090236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071586710","display_name":"Anh\u2010Dao Nguyen","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210090236","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210090236"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anh-Dao Nguyen","raw_affiliation_strings":["Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210090236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084277107","display_name":"Joseph F. Ryan","orcid":"https://orcid.org/0000-0001-5478-0522"},"institutions":[{"id":"https://openalex.org/I2801525552","display_name":"Whitney Museum of American Art","ror":"https://ror.org/01g1t6g78","country_code":"US","type":"archive","lineage":["https://openalex.org/I2801525552"]},{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph F Ryan","raw_affiliation_strings":["Department of Biology, University of Florida, Gainesville, FL 32611, USA","Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine, FL 32080, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Florida, Gainesville, FL 32611, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine, FL 32080, USA","institution_ids":["https://openalex.org/I2801525552","https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086263364","display_name":"Andreas D. Baxevanis","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210090236","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210090236"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andreas D Baxevanis","raw_affiliation_strings":["Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210090236"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5086263364"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210090236"],"apc_list":{"value":2729,"currency":"USD","value_usd":2729},"apc_paid":{"value":2729,"currency":"USD","value_usd":2729},"fwci":5.9476,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.95340869,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2020","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12142","display_name":"Marine Invertebrate Physiology and Ecology","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12142","display_name":"Marine Invertebrate Physiology and Ecology","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.9746999740600586,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12813","display_name":"Plant and Biological Electrophysiology Studies","score":0.9648000001907349,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6541078090667725},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.539052426815033},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5335346460342407},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.44631773233413696},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.44122788310050964},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3916058838367462},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.38773560523986816},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.338811457157135},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29963749647140503},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.22330427169799805},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.18912136554718018},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07387852668762207}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6541078090667725},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.539052426815033},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5335346460342407},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.44631773233413696},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.44122788310050964},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3916058838367462},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.38773560523986816},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.338811457157135},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29963749647140503},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.22330427169799805},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.18912136554718018},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07387852668762207},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D037302","descriptor_name":"Ctenophora","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D037302","descriptor_name":"Ctenophora","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D037302","descriptor_name":"Ctenophora","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baaa029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa029","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:32386298","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32386298","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7211034","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7211034","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baaa029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baaa029","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7599999904632568,"display_name":"Life below water","id":"https://metadata.un.org/sdg/14"}],"awards":[{"id":"https://openalex.org/G1148098428","display_name":"Dimensions: Collaborative Research: Life at extremes: Linking the phylogenetic and genomic diversity of ctenophores to ecophysiological adaptations in the deep sea","funder_award_id":"1542597","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G204753052","display_name":"Phylogenomic Studies on the Evolution of Morphological Complexity","funder_award_id":"1ziahg000140-14","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8959081239","display_name":null,"funder_award_id":"10.13039/100000002","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1992041012","https://openalex.org/W2001496905","https://openalex.org/W2020541351","https://openalex.org/W2027347467","https://openalex.org/W2043951993","https://openalex.org/W2070443686","https://openalex.org/W2076514478","https://openalex.org/W2096641211","https://openalex.org/W2102278945","https://openalex.org/W2104005232","https://openalex.org/W2113042860","https://openalex.org/W2138198642","https://openalex.org/W2139432278","https://openalex.org/W2139838862","https://openalex.org/W2144088079","https://openalex.org/W2144341217","https://openalex.org/W2150097277","https://openalex.org/W2164026798","https://openalex.org/W2176014258","https://openalex.org/W2176109601","https://openalex.org/W2185492685","https://openalex.org/W2274270494","https://openalex.org/W2283570988","https://openalex.org/W2336957559","https://openalex.org/W2498567991","https://openalex.org/W2576983816","https://openalex.org/W2597136739","https://openalex.org/W2606650357","https://openalex.org/W2607411230","https://openalex.org/W2626177244","https://openalex.org/W2761939397","https://openalex.org/W2765473340","https://openalex.org/W2775427740","https://openalex.org/W2785660739","https://openalex.org/W2790137039","https://openalex.org/W2804616119","https://openalex.org/W2809507176","https://openalex.org/W2884702603","https://openalex.org/W2888835175","https://openalex.org/W2923819936","https://openalex.org/W2942048242","https://openalex.org/W2949780506","https://openalex.org/W2951811509","https://openalex.org/W2957892651","https://openalex.org/W2984093691","https://openalex.org/W6648209806","https://openalex.org/W6697596518","https://openalex.org/W6754152491","https://openalex.org/W6754983017","https://openalex.org/W6959605408"],"related_works":["https://openalex.org/W2168783124","https://openalex.org/W2126958666","https://openalex.org/W2068608913","https://openalex.org/W3138117676","https://openalex.org/W2581212852","https://openalex.org/W4404511434","https://openalex.org/W3092268165","https://openalex.org/W2175953840","https://openalex.org/W4213365651","https://openalex.org/W4229585093"],"abstract_inverted_index":{"Following":[0],"the":[1,4,20,24,32,46,53,56,60,68,85,98],"completion":[2],"of":[3,10,23,59,70,121],"genome":[5,47],"sequencing":[6],"and":[7,30,49,112,130],"gene":[8,50,133],"prediction":[9],"Mnemiopsis":[11,33,77],"leidyi,":[12],"a":[13,39],"lobate":[14],"ctenophore":[15],"that":[16,67,135],"is":[17],"native":[18],"to":[19,81,103,132],"coastal":[21],"waters":[22],"western":[25],"Atlantic":[26],"Ocean,":[27],"we":[28],"developed":[29],"implemented":[31],"Genome":[34],"Project":[35],"Portal":[36,99],"(MGP":[37],"Portal),":[38],"comprehensive":[40],"Web-based":[41],"data":[42,71,139],"portal":[43],"for":[44,88],"navigating":[45],"sequence":[48],"annotations.":[51],"In":[52],"years":[54],"following":[55],"first":[57],"release":[58],"MGP":[61],"Portal,":[62],"it":[63],"has":[64,78,100],"become":[65],"evident":[66],"inclusion":[69],"from":[72],"significant":[73],"published":[74],"studies":[75],"on":[76],"been":[79],"critical":[80],"its":[82],"adoption":[83],"as":[84],"centralized":[86],"resource":[87],"this":[89,94],"emerging":[90],"model":[91],"organism.":[92],"With":[93],"most":[95],"recent":[96],"update,":[97],"significantly":[101],"expanded":[102],"include":[104,119],"in":[105],"situ":[106],"images,":[107],"temporal":[108],"developmental":[109],"expression":[110,114],"profiles":[111],"single-cell":[113],"data.":[115],"Recent":[116],"enhancements":[117],"also":[118],"implementations":[120],"an":[122],"updated":[123],"BLAST":[124],"interface,":[125],"new":[126,138],"graphical":[127],"visualization":[128],"tools":[129],"updates":[131],"pages":[134],"integrate":[136],"all":[137],"types.":[140],"Database":[141],"URL:":[142],"https://research.nhgri.nih.gov/mnemiopsis/.":[143]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}